Cow genome map
| Conread name: | Pig4-TMW8055K04 |
| Conread position: | 279-595 |
| Cow position: | chr11:48740336-48740019 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 91, 76 |
| Conread position: | 279-617 |
| Cow position: | chr11:21477200-21477531 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 119 |
| Conread position: | 279-622 |
| Cow position: | chr11:75511603-75511251 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 39, 132 |
| Conread position: | 279-662 |
| Cow position: | chr11:53308306-53307918 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 76, 125 |
| Conread position: | 279-664 |
| Cow position: | chr11:3682245-3681860 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 75, 134 |
| Conread position: | 296-661 |
| Cow position: | chr11:54650253-54649903 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 74, 63 |
| Conread position: | 299-633 |
| Cow position: | chr11:57755308-57754974 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 56 |
| Conread position: | 300-664 |
| Cow position: | chr11:59004944-59004576 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 70, 109 |
| Conread position: | 303-622 |
| Cow position: | chr11:26400095-26400424 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 52, 109 |
| Conread position: | 307-565 |
| Cow position: | chr11:78703540-78703802 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 48, 38 |
| Conread position: | 307-620 |
| Cow position: | chr11:81338770-81338458 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 48, 106 |
| Conread position: | 307-622 |
| Cow position: | chr11:9079946-9079623 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 52, 106 |
| Conread position: | 307-622 |
| Cow position: | chr11:41101540-41101857 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 41, 47 |
| Conread position: | 307-659 |
| Cow position: | chr11:49037780-49037421 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 48, 108 |
| Conread position: | 307-662 |
| Cow position: | chr11:8018389-8018745 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 307-663 |
| Cow position: | chr11:27056092-27055734 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 307-664 |
| Cow position: | chr11:38796426-38796787 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 48, 105 |
| Conread position: | 307-665 |
| Cow position: | chr11:73039205-73039540 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 145, 46 |
| Conread position: | 308-622 |
| Cow position: | chr11:4267534-4267215 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 47, 105 |
| Conread position: | 308-622 |
| Cow position: | chr11:5482825-5482506 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 308-622 |
| Cow position: | chr11:8444369-8444048 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 9, 106 |
| Conread position: | 308-659 |
| Cow position: | chr11:18146925-18146569 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 47, 111 |
| Conread position: | 311-622 |
| Cow position: | chr11:25809121-25808807 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 44, 101 |
| Conread position: | 311-622 |
| Cow position: | chr11:27725279-27724961 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 45, 102 |
| Conread position: | 315-622 |
| Cow position: | chr11:35542442-35542128 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 39, 98 |
| Conread position: | 315-662 |
| Cow position: | chr11:48485448-48485094 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 316-573 |
| Cow position: | chr11:83287103-83286839 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-589 |
| Cow position: | chr11:33602001-33601718 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-591 |
| Cow position: | chr11:40403132-40402844 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-598 |
| Cow position: | chr11:42372430-42372716 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 97 |
| Conread position: | 316-605 |
| Cow position: | chr11:40486785-40487079 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 40, 94 |
| Conread position: | 316-611 |
| Cow position: | chr11:65281646-65281948 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-619 |
| Cow position: | chr11:38832851-38832540 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 316-621 |
| Cow position: | chr11:43992153-43991842 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 316-622 |
| Cow position: | chr11:6343088-6343400 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 38, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:7680591-7680903 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:10850748-10851054 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:11256699-11257007 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:12317443-12317130 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 107 |
| Conread position: | 316-622 |
| Cow position: | chr11:17105062-17104750 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:18920959-18920646 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:19099856-19099545 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 35, 95 |
| Conread position: | 316-622 |
| Cow position: | chr11:26122294-26121980 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 98 |
| Conread position: | 316-622 |
| Cow position: | chr11:32078152-32077843 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:41168067-41167754 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:44154451-44154138 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:44254701-44255013 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:44580603-44580293 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:53429395-53429082 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:56462989-56463302 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:57625549-57625250 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 122, 31 |
| Conread position: | 316-622 |
| Cow position: | chr11:63390852-63390539 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 316-622 |
| Cow position: | chr11:63861008-63860703 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 122, 31 |
| Conread position: | 316-622 |
| Cow position: | chr11:67920705-67920398 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:71332129-71332441 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-622 |
| Cow position: | chr11:84966741-84967048 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 316-633 |
| Cow position: | chr11:11591611-11591930 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 124 |
| Conread position: | 317-559 |
| Cow position: | chr11:44515145-44514896 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 317-622 |
| Cow position: | chr11:7121335-7121023 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 317-622 |
| Cow position: | chr11:9707776-9708088 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 317-622 |
| Cow position: | chr11:30929010-30929322 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 317-622 |
| Cow position: | chr11:44516541-44516229 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 317-622 |
| Cow position: | chr11:60223058-60222746 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 317-629 |
| Cow position: | chr11:17548786-17549103 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 320-606 |
| Cow position: | chr11:14260327-14260033 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 35, 93 |
| Conread position: | 320-618 |
| Cow position: | chr11:60757343-60757040 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 35, 93 |
| Conread position: | 320-619 |
| Cow position: | chr11:58139338-58139642 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 35, 93 |
| Conread position: | 666-824 |
| Cow position: | chr11:77028910-77029070 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 89, 140 |
| Conread position: | 666-831 |
| Cow position: | chr11:81337860-81337695 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 88 |
| Conread position: | 667-828 |
| Cow position: | chr11:21459889-21460055 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 668-825 |
| Cow position: | chr11:31892987-31893145 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 39 |
Show alignments to all cow chromosomes.