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Cow genome map

           
Conread name:
           
Pig4-TMW8057K10
        

               
Conread position:
               
1-115
               

               
Cow position:
               
chr6:55296985-55297098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr6:37783510-37783397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr6:1103629-1103750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chr6:55502876-55502743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
108, 100
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr6:2585052-2584896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr6:16640865-16640707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
124, 55
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr6:56986541-56986699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
125, 38
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr6:17527479-17527644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
125, 55
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr6:51530078-51530245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
58, 102
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr6:22502801-22502976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
125, 99
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr6:36284353-36284171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
82, 99
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr6:14914126-14914314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 66
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr6:5330522-5330336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
103, 154
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr6:8600109-8599927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
125, 38
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr6:12845485-12845307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
121, 14
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr6:43134829-43135014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
125, 100
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr6:67456828-67456641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
127, 99
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr6:17548864-17549060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr6:5095432-5095626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
75, 190
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr6:44867433-44867619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
125, 91
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr6:46173149-46173332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
106, 55
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr6:11830299-11830115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
115, 35
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr6:16287951-16288140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr6:55161580-55161373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr6:30974152-30973952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
125, 40
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr6:58597396-58597603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
98, 128
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr6:17794654-17794861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
125, 106
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr6:16764536-16764764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
42, 107
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr6:62371071-62371293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
125, 36
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr6:582163-582389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
125, 33
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr6:36645495-36645273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 53
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr6:16261888-16261665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
185, 64
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr6:12669205-12668981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
127, 42
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr6:19996724-19996499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
184, 67
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr6:35436104-35435882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
111, 166
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr6:65264436-65264660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
127, 38
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr6:13367395-13367167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
93, 141
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr6:2153489-2153710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 104
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr6:7989305-7989539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr6:12500951-12500737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
184, 6
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr6:32126165-32125944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr6:62669975-62669747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
125, 105
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr6:6060462-6060683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
198, 92
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr6:377235-377006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr6:17997210-17997446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
125, 49
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr6:19695916-19695675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
125, 38
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr6:37149299-37149062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 207
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr6:47305450-47305208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
99, 8
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr6:55763963-55763723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
127, 36
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr6:59104712-59104477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:2607716-2607485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 56
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:8966207-8965961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
22, 31
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:15447088-15447336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:19446360-19446127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:19681415-19681655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
98, 128
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:42565798-42565557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
125, 88
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:50984332-50984096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
125, 96
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:53932737-53932976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:62437524-62437285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
116, 127
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr6:51893390-51893635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
125, 99
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr6:67323419-67323186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
181, 99
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr6:457285-457050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
211, 38
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr6:21004786-21004529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 130
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr6:611659-611427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr6:37199425-37199673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr6:54936689-54936439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
127, 95
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr6:61631499-61631747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
43, 36
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr6:45388435-45388191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr6:4691865-4692126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr6:12652318-12652065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
109, 127
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr6:35993694-35993432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 100
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr6:15937745-15938008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
191, 91
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:36189807-36189518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
191, 43
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:38771390-38771083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
125, 40
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr6:3952628-3952298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
125, 109
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr6:54140907-54140589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr6:67951059-67950734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
97, 30
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr6:66531712-66532027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr6:11169811-11169475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
42, 234
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr6:21590817-21590485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 248
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr6:27239896-27240214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 105
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr6:40032300-40031961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
106, 51
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr6:39093861-39093527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
64, 245
               

               
Conread position:
               
2-125
               

               
Cow position:
               
chr6:20219667-20219792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
2-150
               

               
Cow position:
               
chr6:44623718-44623568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
2-166
               

               
Cow position:
               
chr6:68652242-68652408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr6:18144306-18144135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 106
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr6:35896244-35896404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr6:67282003-67281831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
96, 77
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr6:60468347-60468166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
2-185
               

               
Cow position:
               
chr6:23353659-23353479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
124, 54
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr6:37395292-37395483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
94, 184
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr6:4468877-4468690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
133, 76
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr6:33509895-33509712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
113, 37
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr6:58608335-58608517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr6:66375224-66375409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr6:2623882-2623702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr6:33929438-33929628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
94, 105
               

               
Conread position:
               
2-193
               

               
Cow position:
               
chr6:16700370-16700183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
124, 95
               

               
Conread position:
               
2-193
               

               
Cow position:
               
chr6:22985746-22985939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 85
               

               
Conread position:
               
2-194
               

               
Cow position:
               
chr6:13565195-13565000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
100, 37
               

               
Conread position:
               
2-194
               

               
Cow position:
               
chr6:16103088-16103277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
125, 36
               

               
Conread position:
               
2-195
               

               
Cow position:
               
chr6:10487697-10487502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
2-195
               

               
Cow position:
               
chr6:51969185-51968983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
121, 47
               

               
Conread position:
               
2-195
               

               
Cow position:
               
chr6:52478302-52478499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
96, 103
               

               
Conread position:
               
2-202
               

               
Cow position:
               
chr6:143266-143460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr6:7119510-7119703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
124, 144
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr6:19292910-19292705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
83, 124
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr6:20196194-20196393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
190, 36
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr6:59603099-59603307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
90, 173
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chr6:37463131-37462912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
96, 141
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chr6:15300724-15300937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
183, 35
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chr6:59718905-59718683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
129, 37
               

               
Conread position:
               
2-225
               

               
Cow position:
               
chr6:25008828-25008595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr6:4864438-4864663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
124, 205
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chr6:12542821-12543054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chr6:47640323-47640554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr6:9750948-9751162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
190, 37
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr6:16707121-16706884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
91, 37
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr6:35726203-35725973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
114, 92
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr6:38441281-38441060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
126, 52
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr6:63720309-63720073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr6:66131415-66131181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chr6:28318506-28318283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
55, 35
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr6:40713394-40713625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
119, 99
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr6:52901347-52901117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 208
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chr6:20206384-20206146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
124, 92
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:7190010-7190246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
107, 80
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:9008503-9008742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
124, 96
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:20097850-20098095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:21111060-21110839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
189, 96
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:31564229-31564464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
102, 29
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:36652531-36652288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
96, 106
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:37634905-37634658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 217
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:38218775-38218541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:44078623-44078390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
124, 37
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:46865483-46865724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
124, 99
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:47575015-47574774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
124, 101
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:60057546-60057787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
124, 98
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:60740123-60739884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
124, 98
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:60819622-60819384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
126, 99
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:63298922-63299157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
117, 99
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:64432047-64431808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
40, 175
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr6:65903515-65903748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
183, 98
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr6:10695969-10695739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
124, 10
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr6:14949372-14949609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr6:26728423-26728658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
123, 74
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr6:28483125-28482887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
26, 95
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr6:47355931-47355696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
21, 10
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr6:6943572-6943811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
102, 5
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr6:23247857-23248093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
107, 40
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr6:31526155-31525918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
93, 63
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr6:57164538-57164296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
100, 207
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr6:58074157-58073914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
102, 52
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr6:16626058-16625811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 147
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr6:65259382-65259608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
2-242
               

               
Cow position:
               
chr6:21061777-21062024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
96, 39
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr6:23532763-23532529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr6:26450421-26450182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
190, 36
               

               
Conread position:
               
2-246
               

               
Cow position:
               
chr6:3929427-3929186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
111, 26
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr6:5113944-5114181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr6:14958231-14958483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
33, 209
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr6:15242945-15242698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 165
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr6:24781450-24781698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
124, 33
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr6:25407282-25407526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
21, 101
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr6:38207381-38207629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
100, 83
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr6:44194440-44194679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
190, 120
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr6:60118259-60118012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
124, 118
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr6:61608621-61608373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
123, 218
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr6:55282184-55282430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
8, 87
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr6:54867626-54867371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr6:15243364-15243115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
86, 104
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr6:6343539-6343282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 106
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr6:21736783-21737031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
102, 25
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr6:53841397-53841645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
126, 98
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr6:67214858-67214596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
91, 129
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr6:38640342-38640076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr6:10176193-10176458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
124, 103
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr6:47799402-47799110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
2-279
               

               
Cow position:
               
chr6:32268779-32269063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
190, 36
               

               
Conread position:
               
2-292
               

               
Cow position:
               
chr6:38641601-38641292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
98, 25
               

               
Conread position:
               
2-299
               

               
Cow position:
               
chr6:47339247-47339562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
100, 221
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr6:4383588-4383271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
133, 66
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr6:38614921-38614602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 35
               

               
Conread position:
               
2-309
               

               
Cow position:
               
chr6:16352245-16352542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
124, 66
               

               
Conread position:
               
2-309
               

               
Cow position:
               
chr6:28156054-28156342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
124, 29
               

               
Conread position:
               
2-309
               

               
Cow position:
               
chr6:41733741-41733404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
32, 130
               

               
Conread position:
               
2-309
               

               
Cow position:
               
chr6:49002631-49002947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
124, 40
               

               
Conread position:
               
2-310
               

               
Cow position:
               
chr6:5302311-5302628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
123, 31
               

               
Conread position:
               
2-310
               

               
Cow position:
               
chr6:18048915-18049249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
106, 95
               

               
Conread position:
               
2-310
               

               
Cow position:
               
chr6:35990125-35990446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
2-311
               

               
Cow position:
               
chr6:36470453-36470788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
87, 306
               

               
Conread position:
               
2-311
               

               
Cow position:
               
chr6:51675018-51674693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
184, 53
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr6:6067593-6067903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
190, 96
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr6:45064908-45065232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr6:32122016-32121680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
95, 130
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr6:54368795-54369132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
181, 99
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr6:54990892-54991225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr6:56850128-56849785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
2-320
               

               
Cow position:
               
chr6:8787928-8788247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
96, 121
               

               
Conread position:
               
3-157
               

               
Cow position:
               
chr6:55535642-55535795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr6:48469108-48468956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr6:61142454-61142630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
3-228
               

               
Cow position:
               
chr6:27110705-27110477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 53
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr6:23401885-23402119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
123, 28
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr6:12338101-12337853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr6:17090707-17090467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
97, 52
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr6:17313843-17313602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr6:528176-528413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 91
               

               
Conread position:
               
3-250
               

               
Cow position:
               
chr6:120353-120097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
96, 35
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr6:28477276-28476956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
189, 27
               

               
Conread position:
               
4-142
               

               
Cow position:
               
chr6:19131537-19131398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr6:54490628-54490806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr6:35103221-35103411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
60, 71
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr6:1429747-1429545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
122, 94
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr6:19264392-19264618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
122, 98
               

               
Conread position:
               
4-238
               

               
Cow position:
               
chr6:60350185-60350427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
4-266
               

               
Cow position:
               
chr6:21235150-21234887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
42, 101
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr6:66874458-66874136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
5-160
               

               
Cow position:
               
chr6:12964958-12964804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
121, 109
               

               
Conread position:
               
5-174
               

               
Cow position:
               
chr6:5845065-5845235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
5-178
               

               
Cow position:
               
chr6:6724611-6724436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr6:55546069-55546252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chr6:41375875-41375693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr6:445429-445243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr6:17333947-17334131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr6:21514502-21514691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chr6:10039829-10039618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 97
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chr6:55209663-55209441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
5-233
               

               
Cow position:
               
chr6:6264759-6264520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
36, 146
               

               
Conread position:
               
5-233
               

               
Cow position:
               
chr6:19045728-19045500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
122, 92
               

               
Conread position:
               
5-233
               

               
Cow position:
               
chr6:50467241-50467008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 118
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chr6:16266830-16266594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
92, 206
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr6:60667519-60667291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
121, 93
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr6:3595897-3595663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 115
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr6:48282098-48281865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
99, 110
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr6:60442515-60442287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr6:63251817-63252054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
121, 95
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr6:130057-130293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr6:8562826-8562588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
98, 29
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr6:16316422-16316178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 218
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr6:35471404-35471651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr6:48010421-48010653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
185, 38
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr6:50747103-50746852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 21
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr6:52412965-52412726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
130, 64
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr6:38610074-38609838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
120, 96
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr6:50090748-50090511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
185, 99
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr6:61113873-61113620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 56
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr6:63272505-63272744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
120, 148
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr6:8125432-8125192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
121, 149
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr6:12091887-12092120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
121, 96
               

               
Conread position:
               
5-246
               

               
Cow position:
               
chr6:16746449-16746199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
133, 114
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr6:22332292-22332531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
123, 93
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr6:34196044-34196289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
66, 97
               

               
Conread position:
               
5-250
               

               
Cow position:
               
chr6:54430936-54430677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 119
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chr6:1371120-1371374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
123, 114
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chr6:67617842-67618134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
61, 94
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr6:24110387-24110083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
99, 40
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr6:6063188-6063503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
123, 89
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr6:29240045-29239718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 24
               

               
Conread position:
               
5-317
               

               
Cow position:
               
chr6:34475455-34475774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
177, 64
               

               
Conread position:
               
5-317
               

               
Cow position:
               
chr6:46558163-46557827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
102, 311
               

               
Conread position:
               
5-318
               

               
Cow position:
               
chr6:51835505-51835168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr6:1770092-1770428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
121, 96
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr6:35842764-35842428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 73
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr6:54600454-54600135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
100, 279
               

               
Conread position:
               
6-236
               

               
Cow position:
               
chr6:42961258-42961493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chr6:59069519-59069756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
98, 133
               

               
Conread position:
               
6-247
               

               
Cow position:
               
chr6:20157438-20157191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
91, 206
               

               
Conread position:
               
6-253
               

               
Cow position:
               
chr6:52248025-52248275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 94
               

               
Conread position:
               
7-184
               

               
Cow position:
               
chr6:43345338-43345516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
99, 108
               

               
Conread position:
               
7-189
               

               
Cow position:
               
chr6:54208031-54208215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 83
               

               
Conread position:
               
7-237
               

               
Cow position:
               
chr6:18988312-18988085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
7-238
               

               
Cow position:
               
chr6:21399652-21399885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
88, 129
               

               
Conread position:
               
7-238
               

               
Cow position:
               
chr6:27888455-27888220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
108, 116
               

               
Conread position:
               
7-238
               

               
Cow position:
               
chr6:67187788-67187557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
48, 153
               

               
Conread position:
               
7-240
               

               
Cow position:
               
chr6:61515084-61515328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr6:54365224-54365556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
95, 279
               

               
Conread position:
               
8-238
               

               
Cow position:
               
chr6:24934523-24934758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
110, 96
               

               
Conread position:
               
9-191
               

               
Cow position:
               
chr6:28283963-28283786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
9-195
               

               
Cow position:
               
chr6:48170040-48169860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
117, 89
               

               
Conread position:
               
9-303
               

               
Cow position:
               
chr6:6642506-6642805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
181, 51
               

               
Conread position:
               
10-232
               

               
Cow position:
               
chr6:4559204-4559429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
116, 39
               

               
Conread position:
               
10-238
               

               
Cow position:
               
chr6:16423803-16423571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 135
               

               
Conread position:
               
10-244
               

               
Cow position:
               
chr6:65871138-65870897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 205
               

               
Conread position:
               
11-237
               

               
Cow position:
               
chr6:46292248-46292469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
115, 60
               

               
Conread position:
               
12-226
               

               
Cow position:
               
chr6:32287738-32287518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 93
               

               
Conread position:
               
12-236
               

               
Cow position:
               
chr6:48803536-48803767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 9
               

               
Conread position:
               
12-238
               

               
Cow position:
               
chr6:67968511-67968742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
81, 152
               

               
Conread position:
               
13-238
               

               
Cow position:
               
chr6:59109043-59108809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
115, 83
               

               
Conread position:
               
14-191
               

               
Cow position:
               
chr6:54364895-54365083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
14-236
               

               
Cow position:
               
chr6:11246861-11246633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 40
               

               
Conread position:
               
14-237
               

               
Cow position:
               
chr6:62924899-62925124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
38, 91
               

               
Conread position:
               
15-237
               

               
Cow position:
               
chr6:53519528-53519750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
111, 82
               

               
Conread position:
               
16-237
               

               
Cow position:
               
chr6:31635593-31635816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
18-178
               

               
Cow position:
               
chr6:26764925-26765081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
18-190
               

               
Cow position:
               
chr6:57405032-57405202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
114, 84
               

               
Conread position:
               
19-237
               

               
Cow position:
               
chr6:8804439-8804659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
24-233
               

               
Cow position:
               
chr6:607350-607139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 80
               

               
Conread position:
               
24-240
               

               
Cow position:
               
chr6:16191765-16191535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
24-304
               

               
Cow position:
               
chr6:242888-242596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
102, 12
               

               
Conread position:
               
24-319
               

               
Cow position:
               
chr6:11192377-11192685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
75, 98
               

               
Conread position:
               
26-239
               

               
Cow position:
               
chr6:44099171-44098955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
90, 12
               

               
Conread position:
               
28-216
               

               
Cow position:
               
chr6:58370841-58370643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
28-309
               

               
Cow position:
               
chr6:24583138-24583437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
29-247
               

               
Cow position:
               
chr6:49694460-49694241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 11
               

               
Conread position:
               
30-238
               

               
Cow position:
               
chr6:19013152-19012941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
67, 165
               

               
Conread position:
               
31-230
               

               
Cow position:
               
chr6:44127691-44127486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 193
               

               
Conread position:
               
31-240
               

               
Cow position:
               
chr6:7824846-7824630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 137
               

               
Conread position:
               
31-247
               

               
Cow position:
               
chr6:21542403-21542186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
71, 91
               

               
Conread position:
               
32-239
               

               
Cow position:
               
chr6:416187-415965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
34-237
               

               
Cow position:
               
chr6:12630097-12629893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
37-195
               

               
Cow position:
               
chr6:6470568-6470724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 21
               

               
Conread position:
               
38-184
               

               
Cow position:
               
chr6:30688542-30688685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
88, 56
               

               
Conread position:
               
38-189
               

               
Cow position:
               
chr6:5413895-5413744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 56
               

               
Conread position:
               
38-237
               

               
Cow position:
               
chr6:9219345-9219142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 60
               

               
Conread position:
               
40-247
               

               
Cow position:
               
chr6:5445694-5445489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 102
               

               
Conread position:
               
41-188
               

               
Cow position:
               
chr6:47150863-47150714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
42-247
               

               
Cow position:
               
chr6:642501-642711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
71, 12
               

               
Conread position:
               
42-247
               

               
Cow position:
               
chr6:14838956-14839164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
131, 80
               

               
Conread position:
               
43-177
               

               
Cow position:
               
chr6:28178879-28179012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 88
               

               
Conread position:
               
43-189
               

               
Cow position:
               
chr6:9839240-9839091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 77
               

               
Conread position:
               
43-191
               

               
Cow position:
               
chr6:6673170-6673023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
84, 51
               

               
Conread position:
               
43-237
               

               
Cow position:
               
chr6:68049499-68049304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
148, 58
               

               
Conread position:
               
43-246
               

               
Cow position:
               
chr6:40761193-40761002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 57
               

               
Conread position:
               
43-250
               

               
Cow position:
               
chr6:28148903-28148701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
85, 59
               

               
Conread position:
               
44-189
               

               
Cow position:
               
chr6:34076096-34075949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
44-230
               

               
Cow position:
               
chr6:36928728-36928531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
54, 79
               

               
Conread position:
               
44-244
               

               
Cow position:
               
chr6:60239328-60239528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
147, 57
               

               
Conread position:
               
44-251
               

               
Cow position:
               
chr6:18961448-18961664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
44-280
               

               
Cow position:
               
chr6:38234026-38233789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 194
               

               
Conread position:
               
44-287
               

               
Cow position:
               
chr6:49685649-49685407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
44-310
               

               
Cow position:
               
chr6:47989239-47988991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
148, 57
               

               
Conread position:
               
45-228
               

               
Cow position:
               
chr6:57299081-57298894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
81, 59
               

               
Conread position:
               
45-236
               

               
Cow position:
               
chr6:44984396-44984200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
83, 65
               

               
Conread position:
               
46-228
               

               
Cow position:
               
chr6:10225582-10225761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
146, 58
               

               
Conread position:
               
50-237
               

               
Cow position:
               
chr6:16411252-16411064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
80, 46
               

               
Conread position:
               
50-247
               

               
Cow position:
               
chr6:40834407-40834607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
79, 175
               

               
Conread position:
               
54-231
               

               
Cow position:
               
chr6:19351101-19351279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
54-237
               

               
Cow position:
               
chr6:53731581-53731390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
54-238
               

               
Cow position:
               
chr6:61137432-61137243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
60, 48
               

               
Conread position:
               
54-240
               

               
Cow position:
               
chr6:25773328-25773511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 106
               

               
Conread position:
               
55-191
               

               
Cow position:
               
chr6:58076286-58076150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
55-231
               

               
Cow position:
               
chr6:33150352-33150531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 49
               

               
Conread position:
               
55-237
               

               
Cow position:
               
chr6:45160242-45160423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 40
               

               
Conread position:
               
55-238
               

               
Cow position:
               
chr6:5957972-5958151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 46
               

               
Conread position:
               
55-238
               

               
Cow position:
               
chr6:53711171-53710988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
71, 51
               

               
Conread position:
               
55-240
               

               
Cow position:
               
chr6:62479104-62479296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
56-224
               

               
Cow position:
               
chr6:54288126-54287954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
58-226
               

               
Cow position:
               
chr6:49604729-49604561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
58-240
               

               
Cow position:
               
chr6:62325045-62324861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
71, 42
               

               
Conread position:
               
60-318
               

               
Cow position:
               
chr6:20230775-20231057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 151
               

               
Conread position:
               
61-319
               

               
Cow position:
               
chr6:32335851-32335584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
121, 57
               

               
Conread position:
               
62-318
               

               
Cow position:
               
chr6:9732790-9733063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
33, 150
               

               
Conread position:
               
63-236
               

               
Cow position:
               
chr6:48344381-48344202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 41
               

               
Conread position:
               
65-228
               

               
Cow position:
               
chr6:18968734-18968901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
63, 32
               

               
Conread position:
               
66-247
               

               
Cow position:
               
chr6:357841-358028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 160
               

               
Conread position:
               
70-228
               

               
Cow position:
               
chr6:24515157-24515315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
70-238
               

               
Cow position:
               
chr6:30825990-30826165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
70-240
               

               
Cow position:
               
chr6:10612895-10612731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
71-237
               

               
Cow position:
               
chr6:603136-602962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
85-250
               

               
Cow position:
               
chr6:67574431-67574265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 86
               

               
Conread position:
               
98-319
               

               
Cow position:
               
chr6:57411646-57411413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
324-481
               

               
Cow position:
               
chr6:2848960-2848805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               
Show alignments to all cow chromosomes.