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Cow genome map

           
Conread name:
           
Pig4-TMW8057K10
        

               
Conread position:
               
1-99
               

               
Cow position:
               
chrX:31829364-31829462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-105
               

               
Cow position:
               
chrX:11762904-11763007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chrX:3806779-3806670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chrX:35276082-35275969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chrX:42449917-42450031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chrX:20743701-20743576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chrX:32318403-32318277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chrX:17956787-17956660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chrX:42894023-42893880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chrX:4645816-4645957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
125, 100
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chrX:29115802-29115661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
125, 38
               

               
Conread position:
               
1-155
               

               
Cow position:
               
chrX:40108421-40108573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 100
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chrX:27511525-27511369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
125, 100
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chrX:6463695-6463548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chrX:15820691-15820531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chrX:22914943-22915107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chrX:25037084-25036915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 103
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chrX:36866270-36866092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chrX:46770866-46771038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:27261289-27261105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:47481893-47481719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
124, 34
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chrX:20881848-20882023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
126, 11
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chrX:40680711-40680525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chrX:4268967-4269152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 97
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chrX:5900559-5900379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
125, 37
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chrX:12095675-12095864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 102
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chrX:20168655-20168467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
127, 96
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chrX:20887544-20887732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
95, 68
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chrX:33654747-33654934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
125, 103
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chrX:37129366-37129176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
97, 158
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chrX:45099225-45099032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chrX:46532398-46532593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
95, 184
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chrX:29549452-29549641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
104, 36
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chrX:21328010-21327812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
53, 192
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chrX:23562729-23562539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
185, 100
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chrX:29194326-29194136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
125, 25
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chrX:40283218-40283027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
127, 36
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chrX:24331873-24331655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
125, 88
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chrX:38728831-38728608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
126, 80
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chrX:34315618-34315396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 140
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chrX:24259482-24259717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 168
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chrX:41027256-41027022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chrX:42492426-42492650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
126, 100
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chrX:9416587-9416832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chrX:18204366-18204602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 106
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chrX:37910542-37910312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
97, 132
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chrX:15007052-15007290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 100
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chrX:22454001-22454232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
185, 38
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:11633779-11633534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:18694834-18695064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
202, 35
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:20697512-20697751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
181, 100
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:27228223-27227979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
125, 93
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:27685346-27685103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
18, 104
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:29680164-29680404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
125, 100
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:32420309-32420074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
181, 59
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:34543881-34543642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
99, 137
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:36356203-36355971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:43527605-43527359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
124, 88
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:151998-151759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
179, 35
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:3654705-3654463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
131, 112
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:6407640-6407407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
104, 24
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:7351394-7351154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
125, 29
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:19690312-19690076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
125, 78
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:21004781-21004540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
95, 142
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:21672657-21672410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:22822143-22821906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
163, 104
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:23583658-23583417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
114, 103
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:26493103-26492861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
79, 102
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:27175095-27174850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
97, 37
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:28134435-28134205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
127, 11
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:29289675-29289435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
114, 99
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:29544780-29545023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
125, 95
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:31489617-31489370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:34792215-34792452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
129, 14
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:41674201-41673963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
125, 97
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:44961848-44961606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:46032630-46032863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
27, 32
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chrX:10959298-10959544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
88, 104
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chrX:14955672-14955912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 31
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chrX:46433588-46433339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
128, 104
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:25035285-25035538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
124, 98
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:36061257-36061001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:47279835-47280085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
22, 95
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chrX:12309289-12309536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
181, 117
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chrX:15147100-15147335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
125, 38
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chrX:38549544-38549301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
53, 102
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chrX:1503424-1503184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
103, 51
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chrX:4632760-4633006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chrX:8917491-8917237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 90
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chrX:42247085-42247339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 208
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chrX:31250485-31250231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
134, 205
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chrX:6690163-6690485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 94
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chrX:12290816-12290496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
125, 93
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chrX:31294475-31294780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 97
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chrX:34441357-34441688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
103, 68
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chrX:7178993-7178670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
186, 56
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chrX:12249913-12249566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
21, 140
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chrX:28878077-28878401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
125, 96
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chrX:161509-161182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 125
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chrX:15231563-15231874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
94, 105
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chrX:27705683-27705347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 80
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chrX:31442732-31443067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
97, 127
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chrX:35268958-35268644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
191, 38
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chrX:43730127-43730438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 61
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chrX:44192347-44192689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chrX:20151953-20151601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
98, 42
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chrX:18964733-18964862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 36
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chrX:29553381-29553248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-145
               

               
Cow position:
               
chrX:19943140-19943284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
94, 20
               

               
Conread position:
               
2-154
               

               
Cow position:
               
chrX:32977989-32978133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
124, 36
               

               
Conread position:
               
2-164
               

               
Cow position:
               
chrX:41111812-41111655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
2-167
               

               
Cow position:
               
chrX:19097123-19097291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:917272-917443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
124, 66
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chrX:39220175-39219996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
117, 99
               

               
Conread position:
               
2-184
               

               
Cow position:
               
chrX:36514796-36514980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chrX:41270890-41271087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chrX:7710443-7710628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
123, 99
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chrX:16348475-16348658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
105, 47
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chrX:29050343-29050156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 40
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chrX:33640071-33639884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
93, 78
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chrX:9252067-9252259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
128, 84
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chrX:42855554-42855355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
94, 140
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chrX:31515270-31515065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
40, 143
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chrX:7278007-7277813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 64
               

               
Conread position:
               
2-208
               

               
Cow position:
               
chrX:40685232-40685441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 207
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chrX:26881469-26881681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chrX:4515786-4515572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
2-218
               

               
Cow position:
               
chrX:33204873-33205084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chrX:1499761-1499534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
124, 99
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chrX:36068111-36067884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
97, 180
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chrX:32431720-32431492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
102, 166
               

               
Conread position:
               
2-232
               

               
Cow position:
               
chrX:616163-616401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chrX:11073095-11073328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
113, 165
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chrX:21566503-21566262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
69, 65
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chrX:14883860-14884101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chrX:41884316-41884557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chrX:4768828-4768605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
125, 36
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chrX:9635095-9635325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
110, 37
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chrX:13382420-13382185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chrX:20677462-20677227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
188, 95
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chrX:23513921-23514159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 36
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chrX:27393930-27394158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
124, 97
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chrX:31436570-31436338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
190, 99
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chrX:34314120-34313889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
100, 66
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chrX:37232503-37232269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
190, 84
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chrX:39558253-39558491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
100, 10
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:1615947-1616189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:3130668-3130440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
124, 99
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:4043771-4043992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
126, 35
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:7572001-7571765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
107, 205
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:11082526-11082759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 103
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:11656177-11655947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
189, 86
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:13647689-13647930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
91, 81
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:25338283-25338038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
106, 5
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:26440689-26440921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
124, 37
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:26625575-26625818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
93, 156
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:30543188-30543432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:35542983-35542750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
130, 36
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:40269588-40269343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
30, 105
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chrX:7722084-7721841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
98, 35
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chrX:10411890-10412132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
124, 95
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chrX:38094424-38094670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
86, 36
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chrX:44397105-44396878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
126, 10
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chrX:11084968-11085205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
185, 10
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chrX:23561954-23561724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chrX:10831391-10831646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chrX:17662502-17662746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
126, 39
               

               
Conread position:
               
2-245
               

               
Cow position:
               
chrX:37781013-37781263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
2-245
               

               
Cow position:
               
chrX:43779751-43779998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
112, 83
               

               
Conread position:
               
2-246
               

               
Cow position:
               
chrX:9201644-9201400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
113, 84
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chrX:27431822-27432066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
124, 88
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chrX:40480776-40481020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
124, 37
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chrX:42235428-42235680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 245
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chrX:45598509-45598751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
85, 55
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chrX:45993326-45993071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
23, 99
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chrX:8797345-8797093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chrX:38964204-38963957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
96, 207
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chrX:20584424-20584168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chrX:31312125-31311875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
107, 141
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chrX:34411942-34411686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
2-267
               

               
Cow position:
               
chrX:41068821-41068550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chrX:29601732-29602024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 275
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:23091967-23091660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
23, 134
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:1466258-1465962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
123, 190
               

               
Conread position:
               
2-303
               

               
Cow position:
               
chrX:34565380-34565067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
2-303
               

               
Cow position:
               
chrX:37489815-37489500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
124, 92
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chrX:5017325-5017639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
103, 36
               

               
Conread position:
               
2-305
               

               
Cow position:
               
chrX:47054429-47054759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chrX:32623667-32623349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 160
               

               
Conread position:
               
2-309
               

               
Cow position:
               
chrX:7646347-7646022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
124, 92
               

               
Conread position:
               
2-311
               

               
Cow position:
               
chrX:8925795-8925465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
124, 99
               

               
Conread position:
               
2-311
               

               
Cow position:
               
chrX:16762867-16762533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
115, 152
               

               
Conread position:
               
2-311
               

               
Cow position:
               
chrX:17888327-17888644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
124, 28
               

               
Conread position:
               
2-311
               

               
Cow position:
               
chrX:27680494-27680165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
94, 154
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chrX:1514323-1514643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
124, 35
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chrX:22624572-22624242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chrX:28865910-28866231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
77, 36
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chrX:37119689-37119360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
103, 52
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chrX:40692655-40692977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
102, 224
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chrX:42498952-42499268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
97, 29
               

               
Conread position:
               
2-313
               

               
Cow position:
               
chrX:38218810-38218475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
99, 141
               

               
Conread position:
               
2-313
               

               
Cow position:
               
chrX:45113715-45113388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
68, 97
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chrX:878284-878615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
87, 150
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chrX:40557583-40557920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chrX:11717687-11718025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
96, 300
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chrX:5118402-5118731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 103
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chrX:8869306-8869630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
88, 107
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chrX:11614789-11614475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 23
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chrX:41123155-41122826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 58
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chrX:41238260-41238462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chrX:5679477-5679689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
180, 36
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chrX:6260054-6260284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 51
               

               
Conread position:
               
3-230
               

               
Cow position:
               
chrX:39126421-39126196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
200, 95
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chrX:17726070-17725830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chrX:34402095-34401854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
99, 79
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chrX:34503015-34502778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
123, 91
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chrX:6488671-6488363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
122, 36
               

               
Conread position:
               
4-122
               

               
Cow position:
               
chrX:25412001-25411884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
4-177
               

               
Cow position:
               
chrX:23113379-23113199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 154
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chrX:42873476-42873257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
181, 33
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chrX:47186230-47186465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
122, 95
               

               
Conread position:
               
4-238
               

               
Cow position:
               
chrX:40035346-40035585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
65, 53
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chrX:31260520-31260773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 178
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chrX:39415276-39415513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
121, 88
               

               
Conread position:
               
4-247
               

               
Cow position:
               
chrX:24365727-24365981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
4-251
               

               
Cow position:
               
chrX:20339798-20340043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
214, 72
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chrX:43568013-43567700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
122, 91
               

               
Conread position:
               
4-319
               

               
Cow position:
               
chrX:126861-126546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
96, 34
               

               
Conread position:
               
4-319
               

               
Cow position:
               
chrX:34222810-34222503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
97, 208
               

               
Conread position:
               
5-153
               

               
Cow position:
               
chrX:44339232-44339379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
92, 33
               

               
Conread position:
               
5-170
               

               
Cow position:
               
chrX:19965303-19965474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
5-184
               

               
Cow position:
               
chrX:17949400-17949573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
123, 64
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chrX:4296732-4296910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chrX:27945961-27946147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 107
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chrX:40320499-40320317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chrX:45403732-45403918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
5-193
               

               
Cow position:
               
chrX:44054895-44054712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
121, 89
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chrX:27119790-27119601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 96
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chrX:38208452-38208643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chrX:1175890-1176112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
187, 12
               

               
Conread position:
               
5-228
               

               
Cow position:
               
chrX:34238812-34238585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
97, 193
               

               
Conread position:
               
5-228
               

               
Cow position:
               
chrX:41878841-41879067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
84, 32
               

               
Conread position:
               
5-230
               

               
Cow position:
               
chrX:21642389-21642615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
179, 87
               

               
Conread position:
               
5-231
               

               
Cow position:
               
chrX:45875485-45875252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
120, 96
               

               
Conread position:
               
5-232
               

               
Cow position:
               
chrX:13147074-13146844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
93, 111
               

               
Conread position:
               
5-233
               

               
Cow position:
               
chrX:22387157-22387383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
123, 33
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chrX:42171201-42171439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chrX:43050162-43049920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
97, 153
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chrX:44656864-44657104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 62
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chrX:47484171-47484411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chrX:842250-842014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
121, 77
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chrX:22921414-22921172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
93, 122
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chrX:35885634-35885874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 118
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chrX:36976044-36975805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
98, 63
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chrX:37843810-37843576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chrX:40809786-40809542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chrX:48194942-48195185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chrX:2467977-2467738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
80, 85
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chrX:3580037-3579803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
121, 95
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chrX:17231828-17231593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
92, 101
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chrX:21593374-21593142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
121, 27
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chrX:22813155-22812919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
93, 61
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chrX:23563698-23563938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
92, 103
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chrX:32821121-32820887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
123, 47
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chrX:33000998-33000762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chrX:47873243-47873483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chrX:46722641-46722884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
120, 113
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chrX:47344389-47344151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
100, 176
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chrX:8731186-8730932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
98, 34
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chrX:15545975-15545744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
130, 89
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chrX:46587915-46587670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
97, 206
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chrX:11856523-11856202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 143
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chrX:15815177-15814861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 96
               

               
Conread position:
               
5-312
               

               
Cow position:
               
chrX:40826658-40826986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
92, 82
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chrX:11844148-11844487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
80, 122
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chrX:25815808-25816142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
89, 145
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chrX:27508931-27509266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
101, 17
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chrX:44873468-44873796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
6-201
               

               
Cow position:
               
chrX:48044423-48044618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
120, 35
               

               
Conread position:
               
6-232
               

               
Cow position:
               
chrX:20801861-20801639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
179, 112
               

               
Conread position:
               
6-236
               

               
Cow position:
               
chrX:14599625-14599390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chrX:34662754-34662990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
120, 204
               

               
Conread position:
               
6-240
               

               
Cow position:
               
chrX:27771876-27772104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
186, 16
               

               
Conread position:
               
6-281
               

               
Cow position:
               
chrX:29121139-29120848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
88, 99
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chrX:32170797-32171128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
7-178
               

               
Cow position:
               
chrX:13868793-13868623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
121, 62
               

               
Conread position:
               
7-189
               

               
Cow position:
               
chrX:5872408-5872230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
7-195
               

               
Cow position:
               
chrX:10516344-10516158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
87, 149
               

               
Conread position:
               
7-233
               

               
Cow position:
               
chrX:9365585-9365814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
119, 97
               

               
Conread position:
               
7-237
               

               
Cow position:
               
chrX:7497334-7497099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
97, 166
               

               
Conread position:
               
7-237
               

               
Cow position:
               
chrX:31252499-31252274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 47
               

               
Conread position:
               
7-238
               

               
Cow position:
               
chrX:6278407-6278647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
7-240
               

               
Cow position:
               
chrX:157686-157920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
101, 30
               

               
Conread position:
               
7-240
               

               
Cow position:
               
chrX:25713887-25713650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
81, 119
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chrX:30133227-30133515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
91, 256
               

               
Conread position:
               
7-296
               

               
Cow position:
               
chrX:6265508-6265809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
99, 27
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chrX:24287842-24288161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
185, 52
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chrX:31729533-31729212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
128, 93
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chrX:31948844-31949177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
89, 148
               

               
Conread position:
               
8-238
               

               
Cow position:
               
chrX:46072727-46072962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
8-303
               

               
Cow position:
               
chrX:12405291-12405599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
9-163
               

               
Cow position:
               
chrX:43973634-43973479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 75
               

               
Conread position:
               
9-189
               

               
Cow position:
               
chrX:1572050-1572228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
117, 92
               

               
Conread position:
               
10-178
               

               
Cow position:
               
chrX:6559360-6559525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 94
               

               
Conread position:
               
11-226
               

               
Cow position:
               
chrX:7162143-7161927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 28
               

               
Conread position:
               
11-237
               

               
Cow position:
               
chrX:48385276-48385504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 49
               

               
Conread position:
               
11-239
               

               
Cow position:
               
chrX:20710161-20709929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
105, 55
               

               
Conread position:
               
11-240
               

               
Cow position:
               
chrX:17542047-17541820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 144
               

               
Conread position:
               
12-203
               

               
Cow position:
               
chrX:16055293-16055105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
13-189
               

               
Cow position:
               
chrX:4991928-4992103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 77
               

               
Conread position:
               
13-189
               

               
Cow position:
               
chrX:42507563-42507728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
113, 81
               

               
Conread position:
               
13-228
               

               
Cow position:
               
chrX:13265542-13265755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
13-236
               

               
Cow position:
               
chrX:5638084-5638305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
113, 91
               

               
Conread position:
               
13-237
               

               
Cow position:
               
chrX:29723825-29723597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
111, 88
               

               
Conread position:
               
13-238
               

               
Cow position:
               
chrX:4399211-4398984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
14-208
               

               
Cow position:
               
chrX:47657470-47657274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
103, 144
               

               
Conread position:
               
15-240
               

               
Cow position:
               
chrX:16416592-16416363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
17-177
               

               
Cow position:
               
chrX:22466037-22465863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
17-209
               

               
Cow position:
               
chrX:14900652-14900835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
114, 37
               

               
Conread position:
               
17-215
               

               
Cow position:
               
chrX:19003374-19003181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
109, 21
               

               
Conread position:
               
24-203
               

               
Cow position:
               
chrX:13136158-13136336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
100, 80
               

               
Conread position:
               
24-240
               

               
Cow position:
               
chrX:35822418-35822195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 124
               

               
Conread position:
               
24-249
               

               
Cow position:
               
chrX:11589514-11589741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
103, 74
               

               
Conread position:
               
25-224
               

               
Cow position:
               
chrX:6234376-6234584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
28-178
               

               
Cow position:
               
chrX:11454972-11455127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
29-249
               

               
Cow position:
               
chrX:36778477-36778258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
153, 89
               

               
Conread position:
               
32-194
               

               
Cow position:
               
chrX:20790979-20790824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
96, 23
               

               
Conread position:
               
32-209
               

               
Cow position:
               
chrX:38654364-38654543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 140
               

               
Conread position:
               
32-238
               

               
Cow position:
               
chrX:7718914-7718713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 5
               

               
Conread position:
               
39-238
               

               
Cow position:
               
chrX:37836645-37836446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
39-240
               

               
Cow position:
               
chrX:36961700-36961492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
87, 58
               

               
Conread position:
               
39-308
               

               
Cow position:
               
chrX:47191349-47191634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 10
               

               
Conread position:
               
39-318
               

               
Cow position:
               
chrX:33466666-33466372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
41-236
               

               
Cow position:
               
chrX:9425686-9425881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
141, 60
               

               
Conread position:
               
41-243
               

               
Cow position:
               
chrX:41991988-41992190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
43-202
               

               
Cow position:
               
chrX:12018347-12018185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 75
               

               
Conread position:
               
43-237
               

               
Cow position:
               
chrX:41166907-41167109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
43-238
               

               
Cow position:
               
chrX:9855353-9855159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
148, 84
               

               
Conread position:
               
43-238
               

               
Cow position:
               
chrX:19188986-19188795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 50
               

               
Conread position:
               
43-238
               

               
Cow position:
               
chrX:38071711-38071912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
147, 60
               

               
Conread position:
               
43-311
               

               
Cow position:
               
chrX:28845888-28845608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 197
               

               
Conread position:
               
44-167
               

               
Cow position:
               
chrX:17301252-17301378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
44-202
               

               
Cow position:
               
chrX:29487954-29488107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
82, 57
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chrX:28105972-28105779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
82, 57
               

               
Conread position:
               
45-238
               

               
Cow position:
               
chrX:9954192-9954000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 56
               

               
Conread position:
               
45-313
               

               
Cow position:
               
chrX:48243413-48243692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 56
               

               
Conread position:
               
46-237
               

               
Cow position:
               
chrX:42875035-42874837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
80, 56
               

               
Conread position:
               
46-238
               

               
Cow position:
               
chrX:42461692-42461887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
83, 59
               

               
Conread position:
               
47-238
               

               
Cow position:
               
chrX:39938472-39938664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
69, 49
               

               
Conread position:
               
47-303
               

               
Cow position:
               
chrX:35681393-35681115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
52, 60
               

               
Conread position:
               
48-226
               

               
Cow position:
               
chrX:42789672-42789494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 55
               

               
Conread position:
               
48-237
               

               
Cow position:
               
chrX:15139497-15139689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
78, 52
               

               
Conread position:
               
48-238
               

               
Cow position:
               
chrX:8900077-8899883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
134, 58
               

               
Conread position:
               
48-241
               

               
Cow position:
               
chrX:13785310-13785511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
48-247
               

               
Cow position:
               
chrX:42994663-42994465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
80, 54
               

               
Conread position:
               
48-319
               

               
Cow position:
               
chrX:34270452-34270167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
82, 97
               

               
Conread position:
               
49-202
               

               
Cow position:
               
chrX:40648035-40647881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
79, 55
               

               
Conread position:
               
49-237
               

               
Cow position:
               
chrX:41199155-41198960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
49-328
               

               
Cow position:
               
chrX:47209395-47209115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
65, 51
               

               
Conread position:
               
50-309
               

               
Cow position:
               
chrX:20752303-20752027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 53
               

               
Conread position:
               
54-238
               

               
Cow position:
               
chrX:28157542-28157353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
54-317
               

               
Cow position:
               
chrX:17498129-17497852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
55-191
               

               
Cow position:
               
chrX:35848607-35848469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
55-232
               

               
Cow position:
               
chrX:36723046-36723230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
55-238
               

               
Cow position:
               
chrX:29509395-29509585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
55-238
               

               
Cow position:
               
chrX:37750211-37750395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 159
               

               
Conread position:
               
55-240
               

               
Cow position:
               
chrX:28835859-28836045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
55-319
               

               
Cow position:
               
chrX:14925043-14924754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
80, 20
               

               
Conread position:
               
58-237
               

               
Cow position:
               
chrX:12116087-12115895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
60-237
               

               
Cow position:
               
chrX:23497628-23497809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
60-238
               

               
Cow position:
               
chrX:41743952-41743771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 149
               

               
Conread position:
               
61-232
               

               
Cow position:
               
chrX:44754623-44754794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
119, 11
               

               
Conread position:
               
61-238
               

               
Cow position:
               
chrX:9997297-9997480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
62-238
               

               
Cow position:
               
chrX:14003610-14003786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
66, 42
               

               
Conread position:
               
63-247
               

               
Cow position:
               
chrX:17908253-17908431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
63, 42
               

               
Conread position:
               
63-250
               

               
Cow position:
               
chrX:30832817-30833001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
69-189
               

               
Cow position:
               
chrX:25282986-25283105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
59, 33
               

               
Conread position:
               
70-278
               

               
Cow position:
               
chrX:35969058-35969259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 30
               

               
Conread position:
               
70-287
               

               
Cow position:
               
chrX:40116445-40116230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
122, 47
               

               
Conread position:
               
71-238
               

               
Cow position:
               
chrX:38439508-38439333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
85-312
               

               
Cow position:
               
chrX:35284638-35284378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               
Show alignments to all cow chromosomes.