Cow genome map
| Conread name: | Pig4-TMW8063P09 |
| Conread position: | 1-191 |
| Cow position: | chr1:96142499-96142695 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-212 |
| Cow position: | chr1:90971831-90971615 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 1-230 |
| Cow position: | chr1:89093690-89093925 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 102 |
| Conread position: | 1-238 |
| Cow position: | chr1:66401617-66401857 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 1-242 |
| Cow position: | chr1:17440358-17440122 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 73 |
| Conread position: | 1-243 |
| Cow position: | chr1:3103253-3103506 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 34, 90 |
| Conread position: | 1-243 |
| Cow position: | chr1:82422860-82422624 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 11, 165 |
| Conread position: | 1-244 |
| Cow position: | chr1:82420437-82420191 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 34, 74 |
| Conread position: | 1-244 |
| Cow position: | chr1:101657186-101656939 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 2-231 |
| Cow position: | chr1:29005021-29005253 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 2-239 |
| Cow position: | chr1:81225552-81225313 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 33, 200 |
| Conread position: | 3-240 |
| Cow position: | chr1:22419004-22419247 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 3-243 |
| Cow position: | chr1:17467533-17467285 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 4-242 |
| Cow position: | chr1:16984205-16984449 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 99 |
| Conread position: | 5-158 |
| Cow position: | chr1:64729338-64729180 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 5-179 |
| Cow position: | chr1:93131195-93131011 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 159 |
| Conread position: | 5-205 |
| Cow position: | chr1:13797851-13798054 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 24, 124 |
| Conread position: | 5-211 |
| Cow position: | chr1:4230377-4230576 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 30, 108 |
| Conread position: | 5-220 |
| Cow position: | chr1:44033680-44033898 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 5-232 |
| Cow position: | chr1:4269396-4269629 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-232 |
| Cow position: | chr1:46241621-46241386 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 67 |
| Conread position: | 5-233 |
| Cow position: | chr1:90862191-90862423 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 5-239 |
| Cow position: | chr1:80303702-80303464 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 5-241 |
| Cow position: | chr1:91977225-91976989 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 30, 86 |
| Conread position: | 5-241 |
| Cow position: | chr1:93571618-93571382 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 194 |
| Conread position: | 5-242 |
| Cow position: | chr1:80187379-80187616 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 74 |
| Conread position: | 5-243 |
| Cow position: | chr1:22605612-22605379 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 94 |
| Conread position: | 5-243 |
| Cow position: | chr1:28469858-28470098 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 5-243 |
| Cow position: | chr1:91819471-91819235 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 5-243 |
| Cow position: | chr1:93438979-93438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 110 |
| Conread position: | 5-243 |
| Cow position: | chr1:93579892-93579651 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-244 |
| Cow position: | chr1:40873130-40873373 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-244 |
| Cow position: | chr1:62197461-62197213 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 30, 80 |
| Conread position: | 5-244 |
| Cow position: | chr1:83790012-83789779 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 5-244 |
| Cow position: | chr1:90073015-90072776 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-245 |
| Cow position: | chr1:9147641-9147884 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 162 |
| Conread position: | 5-245 |
| Cow position: | chr1:11056271-11056027 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 126 |
| Conread position: | 5-245 |
| Cow position: | chr1:67905502-67905260 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 5-245 |
| Cow position: | chr1:70106369-70106611 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 5-246 |
| Cow position: | chr1:89399041-89399284 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 128, 103 |
| Conread position: | 5-249 |
| Cow position: | chr1:93440984-93441235 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 12, 181 |
| Conread position: | 5-267 |
| Cow position: | chr1:7434948-7435219 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 30, 182 |
| Conread position: | 6-231 |
| Cow position: | chr1:9153300-9153519 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 7-244 |
| Cow position: | chr1:58050117-58049890 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 11-241 |
| Cow position: | chr1:8692986-8692755 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 113, 87 |
| Conread position: | 11-241 |
| Cow position: | chr1:100077532-100077751 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 107, 25 |
| Conread position: | 11-243 |
| Cow position: | chr1:76117844-76118077 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 11-243 |
| Cow position: | chr1:93129121-93128883 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 11-244 |
| Cow position: | chr1:6971161-6971390 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 11-249 |
| Cow position: | chr1:22607682-22607432 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 12-186 |
| Cow position: | chr1:102334695-102334876 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 12-243 |
| Cow position: | chr1:60452400-60452163 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 13-245 |
| Cow position: | chr1:57822473-57822694 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 14-251 |
| Cow position: | chr1:81469075-81468835 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 15-244 |
| Cow position: | chr1:46283498-46283256 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 21-244 |
| Cow position: | chr1:100716015-100716223 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 26-240 |
| Cow position: | chr1:76660398-76660183 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 29-216 |
| Cow position: | chr1:91840832-91840648 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 93, 69 |
| Conread position: | 29-231 |
| Cow position: | chr1:80193030-80192822 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 30, 70 |
| Conread position: | 29-240 |
| Cow position: | chr1:78728690-78728898 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 65, 125 |
| Conread position: | 29-244 |
| Cow position: | chr1:47636221-47636432 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 96, 69 |
| Conread position: | 30-242 |
| Cow position: | chr1:79931213-79931425 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-253 |
| Cow position: | chr1:60785742-60785528 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 38-243 |
| Cow position: | chr1:47195005-47194802 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 144, 12 |
| Conread position: | 43-240 |
| Cow position: | chr1:39204248-39204453 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 44-243 |
| Cow position: | chr1:63199291-63199492 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 45-247 |
| Cow position: | chr1:15263979-15263781 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 47-242 |
| Cow position: | chr1:68471841-68472038 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 147 |
| Conread position: | 52-244 |
| Cow position: | chr1:96313376-96313562 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 55-242 |
| Cow position: | chr1:26439159-26439343 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 89, 47 |
| Conread position: | 60-249 |
| Cow position: | chr1:1778073-1777885 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 62-244 |
| Cow position: | chr1:91995174-91995359 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 148, 40 |
| Conread position: | 63-230 |
| Cow position: | chr1:11347355-11347521 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 117, 134 |
| Conread position: | 73-240 |
| Cow position: | chr1:39066725-39066559 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 146, 29 |
| Conread position: | 89-240 |
| Cow position: | chr1:42051451-42051592 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 89-245 |
| Cow position: | chr1:89939029-89938874 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 93-244 |
| Cow position: | chr1:91981014-91981162 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 93-246 |
| Cow position: | chr1:89935112-89934963 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 95-241 |
| Cow position: | chr1:22590500-22590355 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 95-244 |
| Cow position: | chr1:98868258-98868404 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 95-249 |
| Cow position: | chr1:22659894-22660046 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 99-254 |
| Cow position: | chr1:92708934-92708782 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 72 |
| Conread position: | 101-240 |
| Cow position: | chr1:40599056-40599195 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 106-243 |
| Cow position: | chr1:69239911-69239776 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
Show alignments to all cow chromosomes.