Cow genome map
| Conread name: | Pig4-TMW8063P09 |
| Conread position: | 1-234 |
| Cow position: | chr11:52785802-52785568 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 15, 158 |
| Conread position: | 1-242 |
| Cow position: | chr11:14678103-14678335 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 1-251 |
| Cow position: | chr11:32770538-32770785 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 4-186 |
| Cow position: | chr11:8237323-8237140 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 122, 94 |
| Conread position: | 4-244 |
| Cow position: | chr11:71161767-71161521 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 116 |
| Conread position: | 5-127 |
| Cow position: | chr11:18139213-18139086 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 5-196 |
| Cow position: | chr11:50040610-50040808 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 5-226 |
| Cow position: | chr11:8557306-8557531 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 133 |
| Conread position: | 5-233 |
| Cow position: | chr11:31816070-31816298 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 5-241 |
| Cow position: | chr11:85701779-85702023 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 220 |
| Conread position: | 5-242 |
| Cow position: | chr11:63283266-63283500 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 73, 95 |
| Conread position: | 5-243 |
| Cow position: | chr11:31348447-31348691 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 30, 103 |
| Conread position: | 5-243 |
| Cow position: | chr11:72345052-72344807 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-243 |
| Cow position: | chr11:83086625-83086861 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 127, 88 |
| Conread position: | 5-244 |
| Cow position: | chr11:3612507-3612743 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 5-244 |
| Cow position: | chr11:30474062-30474308 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 33, 98 |
| Conread position: | 5-245 |
| Cow position: | chr11:61469516-61469760 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 5-249 |
| Cow position: | chr11:47885000-47885246 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 50 |
| Conread position: | 5-249 |
| Cow position: | chr11:65753097-65752844 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 30, 198 |
| Conread position: | 5-254 |
| Cow position: | chr11:36397291-36397536 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 42, 92 |
| Conread position: | 5-262 |
| Cow position: | chr11:3743903-3744164 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 36, 98 |
| Conread position: | 6-225 |
| Cow position: | chr11:2894912-2894687 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 95 |
| Conread position: | 7-188 |
| Cow position: | chr11:7066086-7065898 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 76 |
| Conread position: | 11-233 |
| Cow position: | chr11:70684163-70684391 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 24, 100 |
| Conread position: | 11-238 |
| Cow position: | chr11:63667125-63667352 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 30, 181 |
| Conread position: | 11-241 |
| Cow position: | chr11:7066825-7066589 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 11-247 |
| Cow position: | chr11:12320688-12320442 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 191 |
| Conread position: | 12-249 |
| Cow position: | chr11:64035222-64035454 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 14-245 |
| Cow position: | chr11:59969660-59969897 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 15-225 |
| Cow position: | chr11:31887231-31887446 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 20, 88 |
| Conread position: | 15-243 |
| Cow position: | chr11:2068912-2069142 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 29-233 |
| Cow position: | chr11:8456143-8456347 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 95, 68 |
| Conread position: | 29-245 |
| Cow position: | chr11:68236965-68236746 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 97, 169 |
| Conread position: | 30-244 |
| Cow position: | chr11:14191420-14191208 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-244 |
| Cow position: | chr11:7005575-7005788 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 107, 74 |
| Conread position: | 34-226 |
| Cow position: | chr11:40512007-40511815 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 90, 72 |
| Conread position: | 35-244 |
| Cow position: | chr11:2891893-2891686 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 36-244 |
| Cow position: | chr11:39867557-39867771 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 43-244 |
| Cow position: | chr11:59989304-59989102 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 34, 38 |
| Conread position: | 50-242 |
| Cow position: | chr11:40582383-40582189 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 50-243 |
| Cow position: | chr11:19228344-19228540 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 52-207 |
| Cow position: | chr11:31815460-31815615 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 139 |
| Conread position: | 58-226 |
| Cow position: | chr11:35745744-35745911 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 61-243 |
| Cow position: | chr11:75167088-75166902 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 47 |
| Conread position: | 67-244 |
| Cow position: | chr11:58354918-58355096 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 144 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 75-226 |
| Cow position: | chr11:83266173-83266022 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 80-232 |
| Cow position: | chr11:81060403-81060556 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 83-242 |
| Cow position: | chr11:15636008-15635848 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 118 |
| Conread position: | 84-240 |
| Cow position: | chr11:70695024-70695178 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 90-241 |
| Cow position: | chr11:68168808-68168658 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 95-243 |
| Cow position: | chr11:7475595-7475448 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 95-244 |
| Cow position: | chr11:72074138-72074285 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 97-242 |
| Cow position: | chr11:60249064-60249209 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 97-244 |
| Cow position: | chr11:8369031-8369178 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 108-249 |
| Cow position: | chr11:32205978-32206119 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 23, 84 |
Show alignments to all cow chromosomes.