Cow genome map
| Conread name: | Pig4-TMW8063P09 |
| Conread position: | 1-225 |
| Cow position: | chr13:52852179-52851951 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 106 |
| Conread position: | 1-226 |
| Cow position: | chr13:26005200-26005430 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 1-233 |
| Cow position: | chr13:50813557-50813795 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 34, 106 |
| Conread position: | 1-241 |
| Cow position: | chr13:54409287-54409537 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 147 |
| Conread position: | 1-244 |
| Cow position: | chr13:34189857-34189609 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 34, 102 |
| Conread position: | 1-244 |
| Cow position: | chr13:50117421-50117677 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 34, 110 |
| Conread position: | 2-242 |
| Cow position: | chr13:18860316-18860069 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 5 |
| Conread position: | 5-154 |
| Cow position: | chr13:5244877-5244724 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-180 |
| Cow position: | chr13:60240095-60240266 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 5-191 |
| Cow position: | chr13:22169963-22170144 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 182, 5 |
| Conread position: | 5-217 |
| Cow position: | chr13:31483238-31483453 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-242 |
| Cow position: | chr13:1902251-1902017 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 117, 31 |
| Conread position: | 5-242 |
| Cow position: | chr13:36820401-36820640 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 30, 108 |
| Conread position: | 5-243 |
| Cow position: | chr13:722771-722538 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 97 |
| Conread position: | 5-243 |
| Cow position: | chr13:13800152-13800396 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 30, 105 |
| Conread position: | 5-243 |
| Cow position: | chr13:15310532-15310782 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 109 |
| Conread position: | 5-245 |
| Cow position: | chr13:5249496-5249261 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 5-247 |
| Cow position: | chr13:22109262-22109486 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 5-247 |
| Cow position: | chr13:33006498-33006743 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 190 |
| Conread position: | 5-249 |
| Cow position: | chr13:26935105-26935363 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 94 |
| Conread position: | 5-249 |
| Cow position: | chr13:27505633-27505392 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 5-270 |
| Cow position: | chr13:17121430-17121160 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 6-171 |
| Cow position: | chr13:5610525-5610696 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 11-194 |
| Cow position: | chr13:1597534-1597723 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 11-216 |
| Cow position: | chr13:52849737-52849943 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 11-222 |
| Cow position: | chr13:17580840-17580621 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 11-234 |
| Cow position: | chr13:22169110-22169321 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 170, 29 |
| Conread position: | 11-240 |
| Cow position: | chr13:42101766-42101531 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 11-240 |
| Cow position: | chr13:42124406-42124636 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 38, 87 |
| Conread position: | 11-242 |
| Cow position: | chr13:13559530-13559307 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 11-254 |
| Cow position: | chr13:30324897-30324642 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 12-220 |
| Cow position: | chr13:52184198-52184417 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 210 |
| Conread position: | 12-241 |
| Cow position: | chr13:14863635-14863405 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 44, 82 |
| Conread position: | 12-242 |
| Cow position: | chr13:14574424-14574183 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 12-246 |
| Cow position: | chr13:2188284-2188511 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 117, 12 |
| Conread position: | 13-249 |
| Cow position: | chr13:6063335-6063563 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 29-241 |
| Cow position: | chr13:10111726-10111939 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 128 |
| Conread position: | 34-233 |
| Cow position: | chr13:27711152-27711350 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 110, 64 |
| Conread position: | 35-243 |
| Cow position: | chr13:2780705-2780496 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 35-244 |
| Cow position: | chr13:19329488-19329700 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 67 |
| Conread position: | 43-243 |
| Cow position: | chr13:14024917-14025115 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 58-242 |
| Cow position: | chr13:43784141-43784324 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 123, 40 |
| Conread position: | 60-216 |
| Cow position: | chr13:6492881-6493036 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 131 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 60-225 |
| Cow position: | chr13:22168070-22167895 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 33, 142 |
| Conread position: | 63-243 |
| Cow position: | chr13:20807279-20807462 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 136 |
| Conread position: | 64-248 |
| Cow position: | chr13:40805269-40805456 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 75-225 |
| Cow position: | chr13:34867161-34867012 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 68, 93 |
| Conread position: | 86-246 |
| Cow position: | chr13:15348096-15348253 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 87-245 |
| Cow position: | chr13:56227029-56226880 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 89-217 |
| Cow position: | chr13:22107288-22107161 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 95-246 |
| Cow position: | chr13:50785158-50785309 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 118, 96 |
| Conread position: | 95-254 |
| Cow position: | chr13:33051038-33050878 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 38 |
| Conread position: | 97-243 |
| Cow position: | chr13:47305373-47305521 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 106-241 |
| Cow position: | chr13:58843008-58842873 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-244 |
| Cow position: | chr13:52693178-52693046 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 36, 80 |
Show alignments to all cow chromosomes.