Cow genome map
| Conread name: | Pig4-TMW8063P09 |
| Conread position: | 1-161 |
| Cow position: | chr29:39419571-39419406 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-242 |
| Cow position: | chr29:13500651-13500889 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 34 |
| Conread position: | 5-179 |
| Cow position: | chr29:32204001-32203821 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 5-236 |
| Cow position: | chr29:27058332-27058088 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 30, 170 |
| Conread position: | 5-238 |
| Cow position: | chr29:1900601-1900837 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 95 |
| Conread position: | 5-241 |
| Cow position: | chr29:13443235-13443477 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 116, 93 |
| Conread position: | 5-241 |
| Cow position: | chr29:30539579-30539329 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 167 |
| Conread position: | 5-241 |
| Cow position: | chr29:39532421-39532174 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 33, 198 |
| Conread position: | 5-242 |
| Cow position: | chr29:8849562-8849318 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 5-242 |
| Cow position: | chr29:29455809-29456051 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-243 |
| Cow position: | chr29:23133962-23133733 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 60 |
| Conread position: | 5-243 |
| Cow position: | chr29:29128719-29128477 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 73 |
| Conread position: | 5-246 |
| Cow position: | chr29:38263025-38262782 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 30, 193 |
| Conread position: | 5-270 |
| Cow position: | chr29:24140228-24139955 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 6-242 |
| Cow position: | chr29:39296126-39295890 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 6-243 |
| Cow position: | chr29:7353442-7353682 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 29, 47 |
| Conread position: | 6-247 |
| Cow position: | chr29:10625959-10625713 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 29, 104 |
| Conread position: | 7-166 |
| Cow position: | chr29:1761849-1761684 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 11-223 |
| Cow position: | chr29:6743915-6744131 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 11-254 |
| Cow position: | chr29:11360907-11361154 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 25, 96 |
| Conread position: | 12-241 |
| Cow position: | chr29:30355784-30355552 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 94 |
| Conread position: | 12-241 |
| Cow position: | chr29:44023762-44023530 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 26, 99 |
| Conread position: | 12-243 |
| Cow position: | chr29:1105810-1105571 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 12-244 |
| Cow position: | chr29:25388761-25388988 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 23, 131 |
| Conread position: | 12-249 |
| Cow position: | chr29:1447106-1447343 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 122 |
| Conread position: | 14-244 |
| Cow position: | chr29:1586398-1586167 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 17-233 |
| Cow position: | chr29:40632791-40633010 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 18-241 |
| Cow position: | chr29:36004724-36004947 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 126, 80 |
| Conread position: | 29-189 |
| Cow position: | chr29:30722002-30721838 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 29-189 |
| Cow position: | chr29:43153122-43152961 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 23, 75 |
| Conread position: | 29-241 |
| Cow position: | chr29:31177382-31177592 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 152, 73 |
| Conread position: | 29-254 |
| Cow position: | chr29:18444932-18445155 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 29-271 |
| Cow position: | chr29:43004872-43005115 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 156, 101 |
| Conread position: | 30-241 |
| Cow position: | chr29:15521378-15521162 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 33-243 |
| Cow position: | chr29:26524641-26524855 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 57, 163 |
| Conread position: | 34-233 |
| Cow position: | chr29:32744562-32744366 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 90, 26 |
| Conread position: | 39-242 |
| Cow position: | chr29:7621762-7621966 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 40-242 |
| Cow position: | chr29:42909785-42909990 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 92, 69 |
| Conread position: | 40-243 |
| Cow position: | chr29:22690015-22689811 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 141, 129 |
| Conread position: | 44-242 |
| Cow position: | chr29:40567095-40567290 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 60-239 |
| Cow position: | chr29:42816431-42816256 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 118, 29 |
| Conread position: | 61-231 |
| Cow position: | chr29:5778004-5778174 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 37 |
| Conread position: | 61-242 |
| Cow position: | chr29:27475613-27475794 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-225 |
| Cow position: | chr29:32095820-32095967 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 6, 35 |
| Conread position: | 89-243 |
| Cow position: | chr29:42905421-42905575 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 99-249 |
| Cow position: | chr29:30723355-30723207 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 32, 21 |
Show alignments to all cow chromosomes.