Cow genome map
| Conread name: | Pig4-TMW8063P09 |
| Conread position: | 1-242 |
| Cow position: | chr3:32246411-32246656 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 92 |
| Conread position: | 1-242 |
| Cow position: | chr3:52852031-52852281 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 1-243 |
| Cow position: | chr3:27524310-27524062 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 112 |
| Conread position: | 1-244 |
| Cow position: | chr3:8146851-8147096 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 1-244 |
| Cow position: | chr3:16574645-16574398 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 107 |
| Conread position: | 1-244 |
| Cow position: | chr3:79067294-79067050 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 3-249 |
| Cow position: | chr3:22696814-22696558 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 131 |
| Conread position: | 5-143 |
| Cow position: | chr3:45937038-45936901 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 119, 46 |
| Conread position: | 5-154 |
| Cow position: | chr3:18857503-18857350 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 5-226 |
| Cow position: | chr3:11952120-11952349 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-232 |
| Cow position: | chr3:83432562-83432792 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 5-233 |
| Cow position: | chr3:14184357-14184589 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 5-234 |
| Cow position: | chr3:45948866-45948638 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 5-240 |
| Cow position: | chr3:48244041-48244274 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 101, 43 |
| Conread position: | 5-241 |
| Cow position: | chr3:2308215-2307974 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 108 |
| Conread position: | 5-242 |
| Cow position: | chr3:9233313-9233555 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 40, 111 |
| Conread position: | 5-242 |
| Cow position: | chr3:72884881-72884638 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 30, 97 |
| Conread position: | 5-243 |
| Cow position: | chr3:63998254-63998002 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 201 |
| Conread position: | 5-243 |
| Cow position: | chr3:65535027-65534787 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-244 |
| Cow position: | chr3:39403579-39403824 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-244 |
| Cow position: | chr3:58189856-58190090 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 11-242 |
| Cow position: | chr3:22812613-22812849 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 12-216 |
| Cow position: | chr3:78096201-78096002 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 12-243 |
| Cow position: | chr3:67828902-67829134 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 14-191 |
| Cow position: | chr3:81080673-81080853 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 21, 174 |
| Conread position: | 14-244 |
| Cow position: | chr3:6559203-6559443 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 21-245 |
| Cow position: | chr3:1902242-1902017 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 159, 68 |
| Conread position: | 29-226 |
| Cow position: | chr3:4446225-4446421 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 29-239 |
| Cow position: | chr3:23630484-23630695 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 69 |
| Conread position: | 29-241 |
| Cow position: | chr3:23178585-23178373 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-242 |
| Cow position: | chr3:25695569-25695359 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 109, 60 |
| Conread position: | 29-243 |
| Cow position: | chr3:6591590-6591375 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 106, 68 |
| Conread position: | 29-243 |
| Cow position: | chr3:31110357-31110142 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 96, 164 |
| Conread position: | 29-244 |
| Cow position: | chr3:8464352-8464148 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 29-245 |
| Cow position: | chr3:23187351-23187124 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 58, 174 |
| Conread position: | 29-246 |
| Cow position: | chr3:20059446-20059228 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 89, 57 |
| Conread position: | 29-249 |
| Cow position: | chr3:81222334-81222112 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 30-242 |
| Cow position: | chr3:44095357-44095147 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 125, 74 |
| Conread position: | 30-243 |
| Cow position: | chr3:32578859-32579068 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 92, 39 |
| Conread position: | 32-248 |
| Cow position: | chr3:20351833-20351621 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 89, 131 |
| Conread position: | 33-244 |
| Cow position: | chr3:83980909-83981119 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 40-225 |
| Cow position: | chr3:53211201-53211016 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 150 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-241 |
| Cow position: | chr3:8708666-8708862 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 43-242 |
| Cow position: | chr3:63151791-63151992 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 72-242 |
| Cow position: | chr3:6770094-6770268 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 56, 103 |
| Conread position: | 72-243 |
| Cow position: | chr3:52609025-52609197 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 89-242 |
| Cow position: | chr3:53910652-53910501 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 89-246 |
| Cow position: | chr3:71703972-71704124 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 90-249 |
| Cow position: | chr3:17641764-17641610 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 93-242 |
| Cow position: | chr3:665198-665049 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 18, 32 |
Show alignments to all cow chromosomes.