Cow genome map
| Conread name: | Pig4-TMW8063P09 |
| Conread position: | 2-168 |
| Cow position: | chr4:14947403-14947573 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 82 |
| Conread position: | 2-249 |
| Cow position: | chr4:37857378-37857125 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 34, 203 |
| Conread position: | 4-241 |
| Cow position: | chr4:43643359-43643591 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 5-174 |
| Cow position: | chr4:29232384-29232557 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-220 |
| Cow position: | chr4:39338200-39337978 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 5-231 |
| Cow position: | chr4:57643994-57644218 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 5-233 |
| Cow position: | chr4:28227448-28227220 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 5-239 |
| Cow position: | chr4:4125913-4125686 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 36, 164 |
| Conread position: | 5-241 |
| Cow position: | chr4:59858088-59857850 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 35, 74 |
| Conread position: | 5-242 |
| Cow position: | chr4:25188899-25189137 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 5-243 |
| Cow position: | chr4:37343384-37343628 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 30, 190 |
| Conread position: | 5-243 |
| Cow position: | chr4:43563679-43563440 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 5-243 |
| Cow position: | chr4:43566791-43566552 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 5-243 |
| Cow position: | chr4:54379138-54379380 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 192 |
| Conread position: | 5-243 |
| Cow position: | chr4:63905137-63904893 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-244 |
| Cow position: | chr4:32803694-32803934 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 5-245 |
| Cow position: | chr4:18283656-18283411 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 5-260 |
| Cow position: | chr4:33002571-33002833 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 40, 98 |
| Conread position: | 11-241 |
| Cow position: | chr4:32713422-32713647 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 11-242 |
| Cow position: | chr4:29119471-29119696 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 11-244 |
| Cow position: | chr4:35070385-35070624 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 24, 100 |
| Conread position: | 11-250 |
| Cow position: | chr4:66853822-66854054 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 12-242 |
| Cow position: | chr4:23613056-23613283 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 29, 98 |
| Conread position: | 12-242 |
| Cow position: | chr4:54377585-54377355 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 40, 180 |
| Conread position: | 12-243 |
| Cow position: | chr4:37509801-37509568 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 23, 154 |
| Conread position: | 12-245 |
| Cow position: | chr4:53651842-53652077 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 108, 86 |
| Conread position: | 12-250 |
| Cow position: | chr4:30016877-30016639 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 23, 100 |
| Conread position: | 18-234 |
| Cow position: | chr4:587925-587707 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 20-246 |
| Cow position: | chr4:43283845-43284070 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 155, 82 |
| Conread position: | 26-242 |
| Cow position: | chr4:44425550-44425769 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 26-248 |
| Cow position: | chr4:26617572-26617795 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 28-146 |
| Cow position: | chr4:25193730-25193612 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 71 |
| Conread position: | 28-245 |
| Cow position: | chr4:4020623-4020412 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 94, 168 |
| Conread position: | 29-225 |
| Cow position: | chr4:59265593-59265409 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 29-242 |
| Cow position: | chr4:6887806-6888016 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 95, 31 |
| Conread position: | 29-243 |
| Cow position: | chr4:18797575-18797359 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 83, 165 |
| Conread position: | 29-243 |
| Cow position: | chr4:45383092-45383307 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 61, 21 |
| Conread position: | 29-247 |
| Cow position: | chr4:55648051-55647841 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 29-248 |
| Cow position: | chr4:65653916-65654137 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 97, 79 |
| Conread position: | 40-242 |
| Cow position: | chr4:165628-165426 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 141, 149 |
| Conread position: | 40-243 |
| Cow position: | chr4:4032211-4032400 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 43-249 |
| Cow position: | chr4:5815404-5815201 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 99, 7 |
| Conread position: | 54-227 |
| Cow position: | chr4:32361167-32360994 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 41 |
| Conread position: | 60-242 |
| Cow position: | chr4:60833579-60833758 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 85, 37 |
| Conread position: | 60-243 |
| Cow position: | chr4:19840120-19840311 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 85, 42 |
| Conread position: | 61-262 |
| Cow position: | chr4:573998-573790 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 84-232 |
| Cow position: | chr4:20475604-20475455 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 124 |
| Conread position: | 86-224 |
| Cow position: | chr4:38951584-38951446 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 90-244 |
| Cow position: | chr4:59577458-59577305 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 95-241 |
| Cow position: | chr4:43704017-43704163 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 104 |
| Conread position: | 103-244 |
| Cow position: | chr4:37548518-37548379 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 123-254 |
| Cow position: | chr4:13150626-13150754 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 120, 49 |
Show alignments to all cow chromosomes.