Cow genome map
| Conread name: | Pig4-TMW8063P09 |
| Conread position: | 1-122 |
| Cow position: | chr5:64185298-64185419 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 119, 17 |
| Conread position: | 2-179 |
| Cow position: | chr5:43401244-43401067 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 39, 63 |
| Conread position: | 5-220 |
| Cow position: | chr5:25444845-25444625 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 5-224 |
| Cow position: | chr5:60041730-60041510 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-231 |
| Cow position: | chr5:47838052-47837820 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 97 |
| Conread position: | 5-241 |
| Cow position: | chr5:61773759-61774001 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 103 |
| Conread position: | 5-242 |
| Cow position: | chr5:25479294-25479541 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 86 |
| Conread position: | 5-242 |
| Cow position: | chr5:26464823-26464578 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-242 |
| Cow position: | chr5:40388589-40388341 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 5-243 |
| Cow position: | chr5:3396646-3396404 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 5-244 |
| Cow position: | chr5:34024929-34025168 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 5-244 |
| Cow position: | chr5:39338641-39338888 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 5-245 |
| Cow position: | chr5:9328783-9328545 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 118, 54 |
| Conread position: | 5-249 |
| Cow position: | chr5:31486783-31486538 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 5-256 |
| Cow position: | chr5:31249383-31249635 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 33, 97 |
| Conread position: | 6-241 |
| Cow position: | chr5:42709825-42709597 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 6-243 |
| Cow position: | chr5:44697115-44696873 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 29, 54 |
| Conread position: | 6-243 |
| Cow position: | chr5:59117882-59118124 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 7-189 |
| Cow position: | chr5:66584494-66584307 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 11-245 |
| Cow position: | chr5:16177271-16177040 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 12-242 |
| Cow position: | chr5:9886812-9886574 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 23, 78 |
| Conread position: | 12-243 |
| Cow position: | chr5:29576365-29576599 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 12-246 |
| Cow position: | chr5:63793717-63793485 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 12-247 |
| Cow position: | chr5:41330580-41330335 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 101 |
| Conread position: | 12-247 |
| Cow position: | chr5:47767870-47767634 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 13-226 |
| Cow position: | chr5:47460000-47460214 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 36, 86 |
| Conread position: | 14-248 |
| Cow position: | chr5:49609980-49610200 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 166 |
| Conread position: | 19-215 |
| Cow position: | chr5:6390787-6390591 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 27-242 |
| Cow position: | chr5:2489208-2488988 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 29-230 |
| Cow position: | chr5:42140508-42140308 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 29-242 |
| Cow position: | chr5:1516312-1516532 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 64, 170 |
| Conread position: | 29-243 |
| Cow position: | chr5:2188681-2188892 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 31-247 |
| Cow position: | chr5:59859738-59859953 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 57, 38 |
| Conread position: | 33-222 |
| Cow position: | chr5:51247615-51247799 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 33-243 |
| Cow position: | chr5:39084032-39083822 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 40-243 |
| Cow position: | chr5:75866841-75867043 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 141, 101 |
| Conread position: | 45-243 |
| Cow position: | chr5:17391619-17391421 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 79, 63 |
| Conread position: | 58-248 |
| Cow position: | chr5:74714903-74715088 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 60-243 |
| Cow position: | chr5:39324965-39325145 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 90-241 |
| Cow position: | chr5:60921958-60921807 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 90-245 |
| Cow position: | chr5:43087157-43087002 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 95-243 |
| Cow position: | chr5:43658844-43658991 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 99-249 |
| Cow position: | chr5:45198835-45198981 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 106-243 |
| Cow position: | chr5:9520073-9519938 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 115-243 |
| Cow position: | chr5:20848419-20848543 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 0 |
Show alignments to all cow chromosomes.