Cow genome map

Conread name: Pig4-TMW8066D01

Conread position: 4-701
Cow position: chr5:1340360-1339668 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 208

Conread position: 5-701
Cow position: chr5:40131034-40130337 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 191

Conread position: 6-711
Cow position: chr5:58191192-58190491 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 133

Conread position: 7-162
Cow position: chr5:7142503-7142345 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 54, 138

Conread position: 7-186
Cow position: chr5:987498-987314 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 152
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 62, 0

Conread position: 7-193
Cow position: chr5:3502536-3502345 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 157
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 62, 0

Conread position: 7-193
Cow position: chr5:49222920-49222730 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 117
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 62, 115

Conread position: 7-194
Cow position: chr5:47829505-47829298 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 62, 0

Conread position: 7-202
Cow position: chr5:57001090-57001283 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 132, 65

Conread position: 7-295
Cow position: chr5:50871177-50871450 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 188

Conread position: 7-297
Cow position: chr5:41065936-41065662 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 222
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 62, 187

Conread position: 7-375
Cow position: chr5:6587018-6586665 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 187

Conread position: 7-382
Cow position: chr5:31327104-31327462 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 132

Conread position: 7-410
Cow position: chr5:10813180-10812793 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 186

Conread position: 7-447
Cow position: chr5:50505203-50505630 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 189

Conread position: 7-458
Cow position: chr5:46737024-46736589 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 189

Conread position: 7-475
Cow position: chr5:55629553-55630010 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 187

Conread position: 7-481
Cow position: chr5:3787507-3787970 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 187

Conread position: 7-481
Cow position: chr5:73487489-73487025 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 187

Conread position: 7-515
Cow position: chr5:37378696-37379196 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 186

Conread position: 7-597
Cow position: chr5:4017644-4017061 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 190

Conread position: 7-645
Cow position: chr5:76096621-76097251 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 187

Conread position: 7-675
Cow position: chr5:2975360-2976007 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 79

Conread position: 7-678
Cow position: chr5:23830757-23830083 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 185

Conread position: 7-696
Cow position: chr5:18120912-18120224 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 186

Conread position: 7-696
Cow position: chr5:49520281-49520965 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 101

Conread position: 7-700
Cow position: chr5:54787551-54786856 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 187

Conread position: 7-701
Cow position: chr5:4756613-4755922 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 188

Conread position: 7-701
Cow position: chr5:5926399-5925708 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 188

Conread position: 7-701
Cow position: chr5:10920405-10921098 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 187

Conread position: 7-701
Cow position: chr5:12731145-12730457 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 117

Conread position: 7-701
Cow position: chr5:23958760-23958071 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 187

Conread position: 7-701
Cow position: chr5:26077623-26076947 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 36

Conread position: 7-701
Cow position: chr5:32774335-32775029 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 191

Conread position: 7-701
Cow position: chr5:49118768-49118089 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 125

Conread position: 7-711
Cow position: chr5:10774693-10773994 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 131

Conread position: 7-711
Cow position: chr5:46665567-46666271 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 186

Conread position: 7-746
Cow position: chr5:59062206-59062946 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 177

Conread position: 7-858
Cow position: chr5:46777963-46778787 (view UCSC Genome Browser custom track)
Alignm length: 863
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 186

Conread position: 8-195
Cow position: chr5:59283873-59284064 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 154
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 61, 187

Conread position: 8-205
Cow position: chr5:28014578-28014778 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 52, 112

Conread position: 8-425
Cow position: chr5:31708134-31708533 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 41

Conread position: 8-693
Cow position: chr5:54696236-54695545 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 176

Conread position: 8-701
Cow position: chr5:45701888-45702574 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 102

Conread position: 11-563
Cow position: chr5:59084575-59084035 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 128

Conread position: 131-701
Cow position: chr5:4386899-4387477 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 26

Conread position: 229-743
Cow position: chr5:12641671-12641141 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 262

Conread position: 237-693
Cow position: chr5:57001271-57001749 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 93

Conread position: 238-693
Cow position: chr5:27489741-27490189 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 84

Conread position: 308-716
Cow position: chr5:51167470-51167039 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 402

Conread position: 453-671
Cow position: chr5:47469788-47470013 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 12, 35

Conread position: 512-719
Cow position: chr5:23232355-23232574 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 196

Conread position: 561-696
Cow position: chr5:18900087-18900228 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 725-858
Cow position: chr5:1340360-1340222 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 726-858
Cow position: chr5:40131034-40130896 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 728-854
Cow position: chr5:7142503-7142373 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 728-854
Cow position: chr5:32774335-32774466 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 728-855
Cow position: chr5:10920405-10920537 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:987498-987363 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:3502536-3502401 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:3787507-3787642 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:4017644-4017507 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 728-858
Cow position: chr5:4756613-4756478 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:6587018-6586883 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:10774693-10774558 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:10813180-10813045 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:12731145-12731014 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 62, 117

Conread position: 728-858
Cow position: chr5:18120912-18120777 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:23958760-23958625 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 728-858
Cow position: chr5:31327104-31327239 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:37378696-37378831 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 728-858
Cow position: chr5:41065936-41065799 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:46665567-46665702 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:46737024-46736887 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:47829505-47829370 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:49118768-49118633 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:49222920-49222786 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 62, 115

Conread position: 728-858
Cow position: chr5:50505203-50505338 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 728-858
Cow position: chr5:50871177-50871312 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:54787551-54787416 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:57001090-57001217 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 728-858
Cow position: chr5:59062206-59062341 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 728-858
Cow position: chr5:76096621-76096756 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 729-858
Cow position: chr5:31708134-31708266 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 61, 41

Conread position: 729-858
Cow position: chr5:59283873-59284007 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 0

Show alignments to all cow chromosomes.