Cow genome map
| Conread name: | Pla1-C000001059_E08 |
| Conread position: | 1-219 |
| Cow position: | chr5:2916843-2916623 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 178, 10 |
| Conread position: | 2-178 |
| Cow position: | chr5:63313095-63313274 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 2-191 |
| Cow position: | chr5:10854396-10854588 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 2-192 |
| Cow position: | chr5:413307-413501 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 2-192 |
| Cow position: | chr5:27005292-27005104 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 2-194 |
| Cow position: | chr5:48545783-48545591 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 85 |
| Conread position: | 2-217 |
| Cow position: | chr5:34191354-34191131 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 74 |
| Conread position: | 2-217 |
| Cow position: | chr5:45180673-45180896 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 2-218 |
| Cow position: | chr5:59083804-59084029 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 2-219 |
| Cow position: | chr5:1229205-1228988 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 24 |
| Conread position: | 2-219 |
| Cow position: | chr5:3501708-3501929 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 177, 72 |
| Conread position: | 2-219 |
| Cow position: | chr5:4602932-4602708 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 2-219 |
| Cow position: | chr5:6586041-6586266 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 2-219 |
| Cow position: | chr5:24153050-24152831 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 68 |
| Conread position: | 2-219 |
| Cow position: | chr5:27550039-27550265 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 2-219 |
| Cow position: | chr5:31098840-31099065 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 2-219 |
| Cow position: | chr5:31120787-31121007 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 156 |
| Conread position: | 2-219 |
| Cow position: | chr5:35988586-35988808 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 72, 119 |
| Conread position: | 2-219 |
| Cow position: | chr5:37423568-37423348 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 129, 46 |
| Conread position: | 2-219 |
| Cow position: | chr5:40922280-40922497 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 2-219 |
| Cow position: | chr5:46735860-46736085 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 2-219 |
| Cow position: | chr5:49117922-49118147 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 2-219 |
| Cow position: | chr5:58198430-58198218 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 180, 52 |
| Conread position: | 2-219 |
| Cow position: | chr5:58244401-58244626 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 72, 60 |
| Conread position: | 2-219 |
| Cow position: | chr5:59063062-59062839 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 72, 62 |
| Conread position: | 2-219 |
| Cow position: | chr5:64779584-64779809 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 2-219 |
| Cow position: | chr5:70531989-70532209 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 81, 58 |
| Conread position: | 2-223 |
| Cow position: | chr5:7141682-7141910 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 73, 106 |
| Conread position: | 5-171 |
| Cow position: | chr5:32756027-32756192 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 69, 35 |
| Conread position: | 5-218 |
| Cow position: | chr5:44709963-44710184 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 5-219 |
| Cow position: | chr5:26625786-26626008 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 5-219 |
| Cow position: | chr5:40347863-40348084 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 79, 212 |
| Conread position: | 5-219 |
| Cow position: | chr5:46626849-46627069 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 67, 195 |
| Conread position: | 5-219 |
| Cow position: | chr5:55683029-55682812 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 175, 14 |
| Conread position: | 6-219 |
| Cow position: | chr5:4387637-4387419 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 68, 129 |
| Conread position: | 6-219 |
| Cow position: | chr5:23667734-23667956 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 13-201 |
| Cow position: | chr5:73443824-73443630 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 74, 128 |
| Conread position: | 30-235 |
| Cow position: | chr5:24219555-24219342 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 31-219 |
| Cow position: | chr5:54858709-54858901 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 148, 37 |
| Conread position: | 43-182 |
| Cow position: | chr5:26095940-26095796 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 72-219 |
| Cow position: | chr5:10841045-10841197 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
Show alignments to all cow chromosomes.