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Cow genome map

           
Conread name:
           
Pla1-C0000023_G24
        

               
Conread position:
               
6-300
               

               
Cow position:
               
chr1:73682449-73682147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 177
               

               
Conread position:
               
6-323
               

               
Cow position:
               
chr1:59518711-59519032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
65, 41
               

               
Conread position:
               
7-331
               

               
Cow position:
               
chr1:89742201-89741867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
28, 49
               

               
Conread position:
               
10-331
               

               
Cow position:
               
chr1:96472244-96472556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
15-331
               

               
Cow position:
               
chr1:67305441-67305116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
18-331
               

               
Cow position:
               
chr1:86578749-86579088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 261
               

               
Conread position:
               
22-322
               

               
Cow position:
               
chr1:24876072-24876379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
44, 22
               

               
Conread position:
               
25-322
               

               
Cow position:
               
chr1:19885193-19885498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 120
               

               
Conread position:
               
27-265
               

               
Cow position:
               
chr1:182628-182864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
89, 7
               

               
Conread position:
               
28-327
               

               
Cow position:
               
chr1:63504148-63504454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
27, 185
               

               
Conread position:
               
29-272
               

               
Cow position:
               
chr1:55135646-55135903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
42, 155
               

               
Conread position:
               
29-323
               

               
Cow position:
               
chr1:4290971-4291282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 241
               

               
Conread position:
               
29-330
               

               
Cow position:
               
chr1:10778386-10778688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
29-331
               

               
Cow position:
               
chr1:31390772-31390462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
78, 51
               

               
Conread position:
               
29-331
               

               
Cow position:
               
chr1:36998005-36998311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
30-316
               

               
Cow position:
               
chr1:96305154-96304858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
92, 27
               

               
Conread position:
               
31-220
               

               
Cow position:
               
chr1:12596087-12595886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
31-236
               

               
Cow position:
               
chr1:3243753-3243967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
31-244
               

               
Cow position:
               
chr1:31235117-31234892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 140
               

               
Conread position:
               
31-249
               

               
Cow position:
               
chr1:99039538-99039311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 160
               

               
Conread position:
               
31-258
               

               
Cow position:
               
chr1:45535516-45535760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
31-267
               

               
Cow position:
               
chr1:54199569-54199317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
31-287
               

               
Cow position:
               
chr1:41181659-41181927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
40, 21
               

               
Conread position:
               
31-305
               

               
Cow position:
               
chr1:92963213-92963495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
40, 187
               

               
Conread position:
               
31-313
               

               
Cow position:
               
chr1:27145839-27145545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
40, 167
               

               
Conread position:
               
31-313
               

               
Cow position:
               
chr1:101867170-101867457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
44, 100
               

               
Conread position:
               
31-315
               

               
Cow position:
               
chr1:101551272-101551574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
35, 233
               

               
Conread position:
               
31-316
               

               
Cow position:
               
chr1:26896010-26895700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
31-321
               

               
Cow position:
               
chr1:47658168-47658461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
31-322
               

               
Cow position:
               
chr1:21787141-21787453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
31-323
               

               
Cow position:
               
chr1:51445694-51446003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
40, 130
               

               
Conread position:
               
31-323
               

               
Cow position:
               
chr1:65318396-65318692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
31-324
               

               
Cow position:
               
chr1:45007281-45007587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
26, 108
               

               
Conread position:
               
31-330
               

               
Cow position:
               
chr1:49795819-49796118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
22, 116
               

               
Conread position:
               
31-331
               

               
Cow position:
               
chr1:39418304-39417989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
25, 283
               

               
Conread position:
               
31-331
               

               
Cow position:
               
chr1:68763867-68763559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 134
               

               
Conread position:
               
32-215
               

               
Cow position:
               
chr1:19998220-19998032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
32-217
               

               
Cow position:
               
chr1:56657854-56658045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
32-220
               

               
Cow position:
               
chr1:94404032-94404229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
32-223
               

               
Cow position:
               
chr1:84170303-84170494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
78, 99
               

               
Conread position:
               
32-227
               

               
Cow position:
               
chr1:33811750-33811952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
32-227
               

               
Cow position:
               
chr1:61725297-61725092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
25, 142
               

               
Conread position:
               
32-227
               

               
Cow position:
               
chr1:78794920-78794714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 147
               

               
Conread position:
               
32-229
               

               
Cow position:
               
chr1:5873156-5872943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
28, 147
               

               
Conread position:
               
32-229
               

               
Cow position:
               
chr1:78783362-78783572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 135
               

               
Conread position:
               
32-231
               

               
Cow position:
               
chr1:79663850-79663647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
25, 120
               

               
Conread position:
               
32-236
               

               
Cow position:
               
chr1:76222875-76222657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
41, 152
               

               
Conread position:
               
32-239
               

               
Cow position:
               
chr1:71952903-71953110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
93, 42
               

               
Conread position:
               
32-241
               

               
Cow position:
               
chr1:47008846-47009069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
38, 149
               

               
Conread position:
               
32-243
               

               
Cow position:
               
chr1:4573336-4573558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 80
               

               
Conread position:
               
32-247
               

               
Cow position:
               
chr1:55163738-55163961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
31, 102
               

               
Conread position:
               
32-248
               

               
Cow position:
               
chr1:57635282-57635505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 35
               

               
Conread position:
               
32-249
               

               
Cow position:
               
chr1:43448007-43447785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
73, 45
               

               
Conread position:
               
32-249
               

               
Cow position:
               
chr1:95017700-95017485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 108
               

               
Conread position:
               
32-260
               

               
Cow position:
               
chr1:100770923-100770697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 143
               

               
Conread position:
               
32-261
               

               
Cow position:
               
chr1:82443641-82443399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 232
               

               
Conread position:
               
32-262
               

               
Cow position:
               
chr1:73761536-73761296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
75, 53
               

               
Conread position:
               
32-265
               

               
Cow position:
               
chr1:61564608-61564853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 194
               

               
Conread position:
               
32-266
               

               
Cow position:
               
chr1:635007-635255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
39, 164
               

               
Conread position:
               
32-267
               

               
Cow position:
               
chr1:57396111-57395874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
70, 42
               

               
Conread position:
               
32-275
               

               
Cow position:
               
chr1:95654900-95654642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr1:3429692-3429437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
74, 58
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr1:78091852-78092109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
75, 152
               

               
Conread position:
               
32-277
               

               
Cow position:
               
chr1:91816958-91816699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
23, 148
               

               
Conread position:
               
32-279
               

               
Cow position:
               
chr1:51654226-51654498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
32-280
               

               
Cow position:
               
chr1:42398381-42398116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
32-280
               

               
Cow position:
               
chr1:102647453-102647198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
74, 146
               

               
Conread position:
               
32-290
               

               
Cow position:
               
chr1:98310877-98311157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
32-291
               

               
Cow position:
               
chr1:63390958-63390681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
32-293
               

               
Cow position:
               
chr1:1185555-1185817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 168
               

               
Conread position:
               
32-293
               

               
Cow position:
               
chr1:52753350-52753072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
32-293
               

               
Cow position:
               
chr1:68217543-68217278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 141
               

               
Conread position:
               
32-293
               

               
Cow position:
               
chr1:96478511-96478788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
34, 155
               

               
Conread position:
               
32-294
               

               
Cow position:
               
chr1:85596760-85597027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
32-296
               

               
Cow position:
               
chr1:4374523-4374246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
32-298
               

               
Cow position:
               
chr1:89485401-89485673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
32-300
               

               
Cow position:
               
chr1:48444367-48444099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
32-300
               

               
Cow position:
               
chr1:55146617-55146893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
25, 65
               

               
Conread position:
               
32-306
               

               
Cow position:
               
chr1:20384805-20384522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 212
               

               
Conread position:
               
32-307
               

               
Cow position:
               
chr1:51531589-51531853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
32-309
               

               
Cow position:
               
chr1:56634914-56635202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
43, 182
               

               
Conread position:
               
32-309
               

               
Cow position:
               
chr1:74947309-74947014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
5, 23
               

               
Conread position:
               
32-310
               

               
Cow position:
               
chr1:16855875-16855594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
33, 113
               

               
Conread position:
               
32-310
               

               
Cow position:
               
chr1:45289058-45288766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
32-310
               

               
Cow position:
               
chr1:62291870-62291596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
80, 42
               

               
Conread position:
               
32-312
               

               
Cow position:
               
chr1:4414392-4414102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 202
               

               
Conread position:
               
32-313
               

               
Cow position:
               
chr1:92433834-92434108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
32-315
               

               
Cow position:
               
chr1:7350354-7350658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
39, 148
               

               
Conread position:
               
32-315
               

               
Cow position:
               
chr1:21577620-21577919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
25, 156
               

               
Conread position:
               
32-315
               

               
Cow position:
               
chr1:26702392-26702097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 225
               

               
Conread position:
               
32-315
               

               
Cow position:
               
chr1:39510235-39509948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
29, 147
               

               
Conread position:
               
32-315
               

               
Cow position:
               
chr1:74956208-74955911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
34, 227
               

               
Conread position:
               
32-315
               

               
Cow position:
               
chr1:91039361-91039064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 222
               

               
Conread position:
               
32-316
               

               
Cow position:
               
chr1:25383478-25383779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 200
               

               
Conread position:
               
32-316
               

               
Cow position:
               
chr1:37707153-37706866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
32-316
               

               
Cow position:
               
chr1:41056499-41056789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
39, 73
               

               
Conread position:
               
32-318
               

               
Cow position:
               
chr1:3962868-3962574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
32-318
               

               
Cow position:
               
chr1:37309695-37309406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 42
               

               
Conread position:
               
32-319
               

               
Cow position:
               
chr1:14981303-14981011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 136
               

               
Conread position:
               
32-319
               

               
Cow position:
               
chr1:41696870-41697169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
39, 173
               

               
Conread position:
               
32-319
               

               
Cow position:
               
chr1:42874131-42873836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 120
               

               
Conread position:
               
32-319
               

               
Cow position:
               
chr1:58754969-58754683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
32-319
               

               
Cow position:
               
chr1:96964136-96964430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
32-319
               

               
Cow position:
               
chr1:97954633-97954354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
8, 36
               

               
Conread position:
               
32-321
               

               
Cow position:
               
chr1:31934329-31934623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
13, 152
               

               
Conread position:
               
32-321
               

               
Cow position:
               
chr1:53495279-53495577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 146
               

               
Conread position:
               
32-321
               

               
Cow position:
               
chr1:72286234-72285952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
53, 131
               

               
Conread position:
               
32-321
               

               
Cow position:
               
chr1:82884574-82884279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
39, 149
               

               
Conread position:
               
32-321
               

               
Cow position:
               
chr1:89497781-89498062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:31414143-31413862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:53520722-53521032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
42, 167
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:101792282-101792005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:8438-8733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:1877843-1878138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
37, 160
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:7442800-7443094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:7971246-7971530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 27
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:8349495-8349206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:11226430-11226130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:13413842-13414142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 67
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:13637855-13637545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 159
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:19465878-19466169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
85, 42
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:28563753-28563451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 233
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:29627099-29626795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
37, 153
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:29935566-29935270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:33331273-33330976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
25, 161
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:33997096-33996806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:34159647-34159954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
33, 144
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:35162219-35162528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 175
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:39069135-39068838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 137
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:40531294-40530985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
69, 47
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:42138682-42138976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 65
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:43389232-43388934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
54, 42
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:43872519-43872202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
21, 257
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:47233659-47233360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 149
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:49433449-49433146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
28, 165
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:50931153-50930861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
92, 12
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:53458522-53458813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
56, 37
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:54258383-54258684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 117
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:55229800-55230094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:56225291-56225587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 37
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:56229070-56229357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:61391977-61391673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
25, 223
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:63434994-63434688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:68854990-68855282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
77, 175
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:74084377-74084073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
80, 225
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:75744676-75744980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:78809699-78809994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
42, 157
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:78857507-78857211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
23, 108
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:80336431-80336131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
24, 142
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:81913336-81913037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:84240715-84240998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 47
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:84255570-84255885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:87072520-87072813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
39, 119
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:90976267-90975971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
76, 151
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:93043841-93044135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:95056871-95057163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 137
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:95176751-95177055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
28, 233
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:97778810-97779109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
32-323
               

               
Cow position:
               
chr1:98594386-98594683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
42, 162
               

               
Conread position:
               
32-324
               

               
Cow position:
               
chr1:46218399-46218692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
23, 191
               

               
Conread position:
               
32-324
               

               
Cow position:
               
chr1:76470475-76470762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
32-324
               

               
Cow position:
               
chr1:88652446-88652755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 140
               

               
Conread position:
               
32-325
               

               
Cow position:
               
chr1:42555085-42555385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
32-325
               

               
Cow position:
               
chr1:64804292-64803982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
32-325
               

               
Cow position:
               
chr1:68253407-68253716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
32-325
               

               
Cow position:
               
chr1:83072259-83072561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
32-327
               

               
Cow position:
               
chr1:12464848-12464542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 149
               

               
Conread position:
               
32-327
               

               
Cow position:
               
chr1:19482257-19481960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
26, 115
               

               
Conread position:
               
32-327
               

               
Cow position:
               
chr1:64678513-64678816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 154
               

               
Conread position:
               
32-327
               

               
Cow position:
               
chr1:68845670-68845367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
23, 138
               

               
Conread position:
               
32-327
               

               
Cow position:
               
chr1:75933088-75933389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
37, 165
               

               
Conread position:
               
32-327
               

               
Cow position:
               
chr1:82378610-82378912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 35
               

               
Conread position:
               
32-328
               

               
Cow position:
               
chr1:34856813-34856505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
32-328
               

               
Cow position:
               
chr1:52052888-52052594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 42
               

               
Conread position:
               
32-328
               

               
Cow position:
               
chr1:79165275-79164961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
18, 238
               

               
Conread position:
               
32-328
               

               
Cow position:
               
chr1:100741107-100741400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 193
               

               
Conread position:
               
32-329
               

               
Cow position:
               
chr1:15333693-15334015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
28, 63
               

               
Conread position:
               
32-329
               

               
Cow position:
               
chr1:68827090-68826789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
40, 163
               

               
Conread position:
               
32-329
               

               
Cow position:
               
chr1:82337969-82337656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 234
               

               
Conread position:
               
32-329
               

               
Cow position:
               
chr1:93810257-93810553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 155
               

               
Conread position:
               
32-329
               

               
Cow position:
               
chr1:101634517-101634836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 134
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:1956512-1956210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 152
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:21835764-21836056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 122
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:23969221-23968933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
11, 80
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:40192862-40192583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:44769296-44768986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:45555179-45555490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:61742151-61741843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 20
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:69264637-69264933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:82880480-82880769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:84239291-84238998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
85, 42
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:100421659-100421946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:100551786-100552100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 162
               

               
Conread position:
               
32-330
               

               
Cow position:
               
chr1:101822682-101822390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
71, 35
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:3137748-3138039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
70, 22
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:3790240-3789944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 146
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:7739785-7740073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:8287798-8287505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 90
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:11728993-11729301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
21, 161
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:15547284-15547598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
39, 170
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:19145103-19144802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:22728863-22729182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:22826985-22827285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 105
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:24133240-24132937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:31348094-31347805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
260, 47
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:34686010-34686301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
39, 150
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:34771688-34771375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:36874830-36875152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:39427166-39426879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:40599864-40600165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:42887447-42887151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:43505339-43505655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:45019988-45019673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:52039452-52039764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 231
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:52913052-52912772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
148, 35
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:52956075-52956377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:53397803-53398102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 149
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:54478140-54478455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:54732642-54732362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
56, 124
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:56477410-56477720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 55
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:57900925-57900598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 150
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:64302418-64302116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:68817983-68817673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
39, 227
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:69539513-69539818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
25, 153
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:71045570-71045872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
25, 160
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:71079141-71078833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 152
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:73960517-73960826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 157
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:74822267-74822577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
22, 147
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:76019866-76019570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:77462179-77462476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
27, 190
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:79844284-79844591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
43, 162
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:82936766-82936471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
93, 130
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:84812121-84811812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:90868620-90868321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:92369544-92369860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
39, 280
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:97611837-97611531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
43, 154
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:98551528-98551845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
41, 290
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:99642554-99642242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 162
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr1:100761906-100762203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 23
               

               
Conread position:
               
32-332
               

               
Cow position:
               
chr1:36931975-36932280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 151
               

               
Conread position:
               
32-332
               

               
Cow position:
               
chr1:51394240-51394544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
32-332
               

               
Cow position:
               
chr1:94226732-94226428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 138
               

               
Conread position:
               
32-334
               

               
Cow position:
               
chr1:5135876-5135578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 121
               

               
Conread position:
               
32-334
               

               
Cow position:
               
chr1:77720416-77720120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
44, 150
               

               
Conread position:
               
32-334
               

               
Cow position:
               
chr1:88618409-88618725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
32-336
               

               
Cow position:
               
chr1:52994839-52995157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
32-347
               

               
Cow position:
               
chr1:42360082-42360434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
27, 301
               

               
Conread position:
               
32-365
               

               
Cow position:
               
chr1:41252587-41252246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 105
               

               
Conread position:
               
32-365
               

               
Cow position:
               
chr1:44125824-44125483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
74, 47
               

               
Conread position:
               
32-366
               

               
Cow position:
               
chr1:94261363-94261701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
33-217
               

               
Cow position:
               
chr1:75967253-75967443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
33-233
               

               
Cow position:
               
chr1:38544631-38544436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
33-239
               

               
Cow position:
               
chr1:30034362-30034567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
33-240
               

               
Cow position:
               
chr1:57264170-57263957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
33-244
               

               
Cow position:
               
chr1:73561833-73561608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
38, 122
               

               
Conread position:
               
33-245
               

               
Cow position:
               
chr1:22448770-22448541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
33-267
               

               
Cow position:
               
chr1:57639704-57639453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
33-280
               

               
Cow position:
               
chr1:6788473-6788208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
33-298
               

               
Cow position:
               
chr1:43703231-43703502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
33-300
               

               
Cow position:
               
chr1:90640841-90641123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 181
               

               
Conread position:
               
33-309
               

               
Cow position:
               
chr1:81563549-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
33-312
               

               
Cow position:
               
chr1:75141823-75142104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
33-312
               

               
Cow position:
               
chr1:81355887-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
33-319
               

               
Cow position:
               
chr1:1165418-1165712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 158
               

               
Conread position:
               
33-323
               

               
Cow position:
               
chr1:21954401-21954106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
33-323
               

               
Cow position:
               
chr1:43352840-43352538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 209
               

               
Conread position:
               
33-323
               

               
Cow position:
               
chr1:52488146-52487863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
40, 71
               

               
Conread position:
               
33-323
               

               
Cow position:
               
chr1:89342176-89341862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
33-323
               

               
Cow position:
               
chr1:99609182-99609486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
24, 200
               

               
Conread position:
               
33-325
               

               
Cow position:
               
chr1:31348624-31348316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
40, 148
               

               
Conread position:
               
33-326
               

               
Cow position:
               
chr1:21460684-21460991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
41, 207
               

               
Conread position:
               
33-326
               

               
Cow position:
               
chr1:58825365-58825662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 101
               

               
Conread position:
               
33-328
               

               
Cow position:
               
chr1:85028776-85029078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
41, 164
               

               
Conread position:
               
33-330
               

               
Cow position:
               
chr1:98461107-98461411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
33-331
               

               
Cow position:
               
chr1:3923978-3923672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 140
               

               
Conread position:
               
33-331
               

               
Cow position:
               
chr1:53622780-53623082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
33-331
               

               
Cow position:
               
chr1:91066332-91066026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 238
               

               
Conread position:
               
33-332
               

               
Cow position:
               
chr1:6941282-6941595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 150
               

               
Conread position:
               
33-332
               

               
Cow position:
               
chr1:6958695-6959008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 150
               

               
Conread position:
               
34-266
               

               
Cow position:
               
chr1:24445811-24445567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
34-272
               

               
Cow position:
               
chr1:1991607-1991351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 168
               

               
Conread position:
               
34-293
               

               
Cow position:
               
chr1:68951449-68951713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
67, 158
               

               
Conread position:
               
34-310
               

               
Cow position:
               
chr1:9533993-9534267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
44, 40
               

               
Conread position:
               
34-312
               

               
Cow position:
               
chr1:20204844-20205134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 140
               

               
Conread position:
               
34-315
               

               
Cow position:
               
chr1:70380328-70380033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
37, 151
               

               
Conread position:
               
34-315
               

               
Cow position:
               
chr1:81228522-81228224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 103
               

               
Conread position:
               
34-317
               

               
Cow position:
               
chr1:53425005-53425289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
36, 46
               

               
Conread position:
               
34-318
               

               
Cow position:
               
chr1:63530398-63530671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
34-322
               

               
Cow position:
               
chr1:80422120-80422389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
34-323
               

               
Cow position:
               
chr1:5597383-5597093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
29, 87
               

               
Conread position:
               
34-323
               

               
Cow position:
               
chr1:23634083-23633812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
34-323
               

               
Cow position:
               
chr1:48105616-48105318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 147
               

               
Conread position:
               
34-323
               

               
Cow position:
               
chr1:51968288-51968580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
34-323
               

               
Cow position:
               
chr1:53374253-53374546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 54
               

               
Conread position:
               
34-323
               

               
Cow position:
               
chr1:55357468-55357177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
40, 120
               

               
Conread position:
               
34-330
               

               
Cow position:
               
chr1:44506785-44507098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
37, 158
               

               
Conread position:
               
34-331
               

               
Cow position:
               
chr1:5579877-5580181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
15, 220
               

               
Conread position:
               
34-331
               

               
Cow position:
               
chr1:24778161-24777867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
34-331
               

               
Cow position:
               
chr1:68862853-68863156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
34-331
               

               
Cow position:
               
chr1:72141382-72141698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
78, 208
               

               
Conread position:
               
34-331
               

               
Cow position:
               
chr1:80988164-80988474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
37, 222
               

               
Conread position:
               
34-370
               

               
Cow position:
               
chr1:49839325-49839655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
35-288
               

               
Cow position:
               
chr1:46030534-46030278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
70, 155
               

               
Conread position:
               
36-319
               

               
Cow position:
               
chr1:12978505-12978796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
36-330
               

               
Cow position:
               
chr1:72011984-72011688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
36-331
               

               
Cow position:
               
chr1:24534423-24534131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
37-227
               

               
Cow position:
               
chr1:100812744-100812553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
37-243
               

               
Cow position:
               
chr1:3244674-3244891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
37-258
               

               
Cow position:
               
chr1:70028408-70028633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
37-310
               

               
Cow position:
               
chr1:26729548-26729820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
37-321
               

               
Cow position:
               
chr1:102756605-102756317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 45
               

               
Conread position:
               
37-322
               

               
Cow position:
               
chr1:79660564-79660285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
86, 22
               

               
Conread position:
               
37-328
               

               
Cow position:
               
chr1:76613305-76613012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
66, 32
               

               
Conread position:
               
37-331
               

               
Cow position:
               
chr1:20667921-20667617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 163
               

               
Conread position:
               
38-228
               

               
Cow position:
               
chr1:63905648-63905451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
38-323
               

               
Cow position:
               
chr1:16962187-16961892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
38-323
               

               
Cow position:
               
chr1:33207053-33206762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
19, 146
               

               
Conread position:
               
39-323
               

               
Cow position:
               
chr1:57297301-57297607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
39-331
               

               
Cow position:
               
chr1:96081311-96081606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 144
               

               
Conread position:
               
40-323
               

               
Cow position:
               
chr1:48580955-48581246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
35, 144
               

               
Conread position:
               
40-382
               

               
Cow position:
               
chr1:34300724-34300367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
41-313
               

               
Cow position:
               
chr1:27380304-27380564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
41-328
               

               
Cow position:
               
chr1:70538437-70538734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
41-330
               

               
Cow position:
               
chr1:42545959-42545654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
43-326
               

               
Cow position:
               
chr1:49317670-49317375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
28, 150
               

               
Conread position:
               
44-267
               

               
Cow position:
               
chr1:60907203-60907439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
44-323
               

               
Cow position:
               
chr1:101866667-101866380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 106
               

               
Conread position:
               
44-331
               

               
Cow position:
               
chr1:101632511-101632210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
44-338
               

               
Cow position:
               
chr1:95215349-95215058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
65, 10
               

               
Conread position:
               
45-323
               

               
Cow position:
               
chr1:37322168-37321884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
61, 6
               

               
Conread position:
               
45-327
               

               
Cow position:
               
chr1:77133593-77133875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
64, 6
               

               
Conread position:
               
45-328
               

               
Cow position:
               
chr1:70534100-70533816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
64, 7
               

               
Conread position:
               
46-223
               

               
Cow position:
               
chr1:3340776-3340956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 5
               

               
Conread position:
               
46-286
               

               
Cow position:
               
chr1:13810487-13810728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
46-293
               

               
Cow position:
               
chr1:19568687-19568938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
59, 8
               

               
Conread position:
               
46-309
               

               
Cow position:
               
chr1:90423247-90422979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
46-323
               

               
Cow position:
               
chr1:41735786-41735502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 8
               

               
Conread position:
               
46-323
               

               
Cow position:
               
chr1:55705415-55705125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
58, 11
               

               
Conread position:
               
46-323
               

               
Cow position:
               
chr1:87095396-87095096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
46-325
               

               
Cow position:
               
chr1:57420892-57420615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 21
               

               
Conread position:
               
46-326
               

               
Cow position:
               
chr1:69415879-69415590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 8
               

               
Conread position:
               
46-326
               

               
Cow position:
               
chr1:75347455-75347745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
46-328
               

               
Cow position:
               
chr1:197169-196882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
75, 8
               

               
Conread position:
               
46-328
               

               
Cow position:
               
chr1:32341370-32341074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 8
               

               
Conread position:
               
46-328
               

               
Cow position:
               
chr1:50345381-50345668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
71, 8
               

               
Conread position:
               
46-330
               

               
Cow position:
               
chr1:93528529-93528826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
46-331
               

               
Cow position:
               
chr1:31272609-31272315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 116
               

               
Conread position:
               
46-331
               

               
Cow position:
               
chr1:61884754-61885039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
46-331
               

               
Cow position:
               
chr1:68619099-68618807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
46-331
               

               
Cow position:
               
chr1:86110897-86110617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
60, 133
               

               
Conread position:
               
46-342
               

               
Cow position:
               
chr1:77620386-77620685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
61, 11
               

               
Conread position:
               
47-252
               

               
Cow position:
               
chr1:20544127-20544344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 5
               

               
Conread position:
               
47-279
               

               
Cow position:
               
chr1:79278610-79278373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
55, 5
               

               
Conread position:
               
47-293
               

               
Cow position:
               
chr1:69127331-69127078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 5
               

               
Conread position:
               
47-296
               

               
Cow position:
               
chr1:95178786-95179045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 145
               

               
Conread position:
               
47-299
               

               
Cow position:
               
chr1:73196400-73196135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
47-300
               

               
Cow position:
               
chr1:26178979-26178716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 5
               

               
Conread position:
               
47-316
               

               
Cow position:
               
chr1:81868890-81868619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
47-323
               

               
Cow position:
               
chr1:31608063-31607771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
27, 217
               

               
Conread position:
               
47-323
               

               
Cow position:
               
chr1:55429124-55428838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 5
               

               
Conread position:
               
47-323
               

               
Cow position:
               
chr1:91875075-91874799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
47-328
               

               
Cow position:
               
chr1:66430136-66430414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
60, 10
               

               
Conread position:
               
47-330
               

               
Cow position:
               
chr1:22525716-22526004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
47-331
               

               
Cow position:
               
chr1:83747775-83748069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
23, 121
               

               
Conread position:
               
48-331
               

               
Cow position:
               
chr1:51417608-51417897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
48-331
               

               
Cow position:
               
chr1:77880899-77880605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
49-323
               

               
Cow position:
               
chr1:96365505-96365776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
49-326
               

               
Cow position:
               
chr1:64189336-64189621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 162
               

               
Conread position:
               
50-265
               

               
Cow position:
               
chr1:21934338-21934113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
51-328
               

               
Cow position:
               
chr1:15691176-15691454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
62, 138
               

               
Conread position:
               
52-214
               

               
Cow position:
               
chr1:89438096-89437929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 112
               

               
Conread position:
               
52-294
               

               
Cow position:
               
chr1:101946867-101946625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
52-295
               

               
Cow position:
               
chr1:29975758-29975510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 15
               

               
Conread position:
               
52-316
               

               
Cow position:
               
chr1:21508230-21508504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
52-321
               

               
Cow position:
               
chr1:44075870-44075603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
52-322
               

               
Cow position:
               
chr1:95499652-95499379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
52-323
               

               
Cow position:
               
chr1:4032465-4032750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
52-323
               

               
Cow position:
               
chr1:31499467-31499743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
52-323
               

               
Cow position:
               
chr1:57575919-57575646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 114
               

               
Conread position:
               
52-323
               

               
Cow position:
               
chr1:71135992-71136270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
57, 233
               

               
Conread position:
               
52-323
               

               
Cow position:
               
chr1:72068998-72068716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
52-323
               

               
Cow position:
               
chr1:95557872-95558155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 144
               

               
Conread position:
               
52-324
               

               
Cow position:
               
chr1:6166083-6166356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
52-326
               

               
Cow position:
               
chr1:89443637-89443358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 156
               

               
Conread position:
               
52-327
               

               
Cow position:
               
chr1:23099739-23100022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 252
               

               
Conread position:
               
52-327
               

               
Cow position:
               
chr1:30441799-30442078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
52-331
               

               
Cow position:
               
chr1:42175564-42175853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
65, 129
               

               
Conread position:
               
52-336
               

               
Cow position:
               
chr1:11914038-11913744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
53-319
               

               
Cow position:
               
chr1:99512412-99512152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
66, 75
               

               
Conread position:
               
54-315
               

               
Cow position:
               
chr1:85162702-85162437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
54-324
               

               
Cow position:
               
chr1:20581790-20582063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
80, 73
               

               
Conread position:
               
55-224
               

               
Cow position:
               
chr1:64962826-64962648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
46, 106
               

               
Conread position:
               
55-323
               

               
Cow position:
               
chr1:102349907-102349634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 199
               

               
Conread position:
               
56-323
               

               
Cow position:
               
chr1:7748063-7748331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
56-323
               

               
Cow position:
               
chr1:7752229-7752497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
57-234
               

               
Cow position:
               
chr1:64421179-64421360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
57-236
               

               
Cow position:
               
chr1:51684644-51684838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
57-236
               

               
Cow position:
               
chr1:82504817-82505007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
57-277
               

               
Cow position:
               
chr1:83659429-83659206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
86, 61
               

               
Conread position:
               
57-280
               

               
Cow position:
               
chr1:9470547-9470323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
57-292
               

               
Cow position:
               
chr1:6305020-6304777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
46, 133
               

               
Conread position:
               
57-296
               

               
Cow position:
               
chr1:70026499-70026254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
48, 128
               

               
Conread position:
               
57-321
               

               
Cow position:
               
chr1:78096781-78097043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
119, 60
               

               
Conread position:
               
57-323
               

               
Cow position:
               
chr1:10719637-10719362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
44, 230
               

               
Conread position:
               
57-323
               

               
Cow position:
               
chr1:45553386-45553125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
119, 41
               

               
Conread position:
               
57-323
               

               
Cow position:
               
chr1:65103482-65103733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
125, 52
               

               
Conread position:
               
57-323
               

               
Cow position:
               
chr1:69678477-69678207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
69, 128
               

               
Conread position:
               
57-323
               

               
Cow position:
               
chr1:84282919-84283191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
57-323
               

               
Cow position:
               
chr1:93499471-93499738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 80
               

               
Conread position:
               
57-323
               

               
Cow position:
               
chr1:93554688-93554954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 124
               

               
Conread position:
               
57-324
               

               
Cow position:
               
chr1:16767236-16766969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
45, 119
               

               
Conread position:
               
57-325
               

               
Cow position:
               
chr1:53308546-53308273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
57-325
               

               
Cow position:
               
chr1:60281215-60281493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 117
               

               
Conread position:
               
57-331
               

               
Cow position:
               
chr1:70434848-70435123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
70, 114
               

               
Conread position:
               
57-331
               

               
Cow position:
               
chr1:71119359-71119647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
57-331
               

               
Cow position:
               
chr1:89510078-89509795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
57-331
               

               
Cow position:
               
chr1:90621666-90621379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
33, 111
               

               
Conread position:
               
57-331
               

               
Cow position:
               
chr1:97696585-97696870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
51, 207
               

               
Conread position:
               
57-336
               

               
Cow position:
               
chr1:97938810-97939088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 128
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr1:98030764-98031040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 254
               

               
Conread position:
               
58-324
               

               
Cow position:
               
chr1:724584-724859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
50, 33
               

               
Conread position:
               
58-329
               

               
Cow position:
               
chr1:64572361-64572639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 20
               

               
Conread position:
               
59-262
               

               
Cow position:
               
chr1:93228372-93228582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 123
               

               
Conread position:
               
59-331
               

               
Cow position:
               
chr1:81290359-81290633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
61-331
               

               
Cow position:
               
chr1:23512806-23512534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
60, 50
               

               
Conread position:
               
62-323
               

               
Cow position:
               
chr1:97231823-97232078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
63-331
               

               
Cow position:
               
chr1:69227591-69227316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
64-323
               

               
Cow position:
               
chr1:91023616-91023349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 172
               

               
Conread position:
               
64-328
               

               
Cow position:
               
chr1:20099224-20099488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
66-323
               

               
Cow position:
               
chr1:6228731-6228467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 123
               

               
Conread position:
               
68-274
               

               
Cow position:
               
chr1:87440324-87440537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
68-323
               

               
Cow position:
               
chr1:41047445-41047185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 149
               

               
Conread position:
               
69-293
               

               
Cow position:
               
chr1:51981088-51981310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
69-323
               

               
Cow position:
               
chr1:38753774-38754041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
69-323
               

               
Cow position:
               
chr1:65909383-65909628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
39, 120
               

               
Conread position:
               
69-323
               

               
Cow position:
               
chr1:91811644-91811896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
57, 120
               

               
Conread position:
               
69-329
               

               
Cow position:
               
chr1:77683214-77683475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 124
               

               
Conread position:
               
69-330
               

               
Cow position:
               
chr1:20000894-20000623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
69-330
               

               
Cow position:
               
chr1:85647925-85647653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
44, 237
               

               
Conread position:
               
69-330
               

               
Cow position:
               
chr1:86682706-86682435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
69-332
               

               
Cow position:
               
chr1:22192620-22192896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
70-333
               

               
Cow position:
               
chr1:68676230-68676492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
247, 37
               

               
Conread position:
               
71-323
               

               
Cow position:
               
chr1:86057199-86056957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
48, 56
               

               
Conread position:
               
71-326
               

               
Cow position:
               
chr1:10064116-10063858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
58, 137
               

               
Conread position:
               
71-329
               

               
Cow position:
               
chr1:61721519-61721262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 214
               

               
Conread position:
               
71-331
               

               
Cow position:
               
chr1:101834683-101834942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
72-262
               

               
Cow position:
               
chr1:10655355-10655538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
72-326
               

               
Cow position:
               
chr1:80899985-80900240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
73-322
               

               
Cow position:
               
chr1:30047733-30047486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 92
               

               
Conread position:
               
73-323
               

               
Cow position:
               
chr1:89448758-89449018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
73-331
               

               
Cow position:
               
chr1:39225064-39224800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
42, 113
               

               
Conread position:
               
73-336
               

               
Cow position:
               
chr1:41115854-41115588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
36, 120
               

               
Conread position:
               
74-240
               

               
Cow position:
               
chr1:48696903-48696736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 57
               

               
Conread position:
               
74-322
               

               
Cow position:
               
chr1:86113533-86113283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
107, 33
               

               
Conread position:
               
74-323
               

               
Cow position:
               
chr1:87197689-87197938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
102, 61
               

               
Conread position:
               
74-329
               

               
Cow position:
               
chr1:24407025-24406773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 105
               

               
Conread position:
               
74-331
               

               
Cow position:
               
chr1:8129105-8128841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
48, 126
               

               
Conread position:
               
76-331
               

               
Cow position:
               
chr1:18780470-18780203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
78-297
               

               
Cow position:
               
chr1:5023890-5023670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
80-326
               

               
Cow position:
               
chr1:44746733-44746980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
81-315
               

               
Cow position:
               
chr1:89349831-89350075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
81-325
               

               
Cow position:
               
chr1:30189024-30189272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
81-328
               

               
Cow position:
               
chr1:78079596-78079849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
82-322
               

               
Cow position:
               
chr1:89381144-89381392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 92
               

               
Conread position:
               
82-401
               

               
Cow position:
               
chr1:19227174-19226868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
85-315
               

               
Cow position:
               
chr1:26616198-26615964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 90
               

               
Conread position:
               
85-330
               

               
Cow position:
               
chr1:16061135-16060879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
85-331
               

               
Cow position:
               
chr1:42869063-42868814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
16, 160
               

               
Conread position:
               
87-323
               

               
Cow position:
               
chr1:22823790-22824023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
104, 14
               

               
Conread position:
               
89-322
               

               
Cow position:
               
chr1:58036908-58037135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
94-329
               

               
Cow position:
               
chr1:6394446-6394681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
96-280
               

               
Cow position:
               
chr1:78791414-78791229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
96-323
               

               
Cow position:
               
chr1:6826405-6826181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
96-330
               

               
Cow position:
               
chr1:21093004-21093243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
97-322
               

               
Cow position:
               
chr1:71666034-71665820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
88, 17
               

               
Conread position:
               
98-323
               

               
Cow position:
               
chr1:49082635-49082861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
99-331
               

               
Cow position:
               
chr1:95153116-95153348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
69, 15
               

               
Conread position:
               
100-331
               

               
Cow position:
               
chr1:98511825-98512052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr1:26895078-26894854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
149, 35
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr1:33913718-33913946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
101-323
               

               
Cow position:
               
chr1:47790770-47790548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
21, 177
               

               
Conread position:
               
101-327
               

               
Cow position:
               
chr1:93110724-93110492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 104
               

               
Conread position:
               
101-328
               

               
Cow position:
               
chr1:72731936-72732163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
101-331
               

               
Cow position:
               
chr1:28176907-28177130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
214, 71
               

               
Conread position:
               
101-331
               

               
Cow position:
               
chr1:98360500-98360278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
78, 56
               

               
Conread position:
               
102-323
               

               
Cow position:
               
chr1:66898598-66898379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
206, 64
               

               
Conread position:
               
103-318
               

               
Cow position:
               
chr1:22944126-22943915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
103-322
               

               
Cow position:
               
chr1:1499791-1499576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
103-330
               

               
Cow position:
               
chr1:67919028-67919260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
104-238
               

               
Cow position:
               
chr1:81471033-81471166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
104-267
               

               
Cow position:
               
chr1:8984784-8984620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
104-267
               

               
Cow position:
               
chr1:24235616-24235457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
104-294
               

               
Cow position:
               
chr1:14309134-14308943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
104-305
               

               
Cow position:
               
chr1:40482502-40482313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
104-316
               

               
Cow position:
               
chr1:100324843-100324640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
78, 99
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:2976093-2975876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
128, 68
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:3352793-3352582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:13548082-13547859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 17
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:20950622-20950832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:32001420-32001203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 143
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:42482104-42482315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:43311875-43311653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
72, 46
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:52435175-52435390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:53369984-53370201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:56618750-56618537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:71227987-71228210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
57, 153
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:71350822-71350609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:74927785-74928002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:86073496-86073714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
71, 54
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:88913219-88913437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:89076728-89076515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:89785812-89786027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:89835150-89835369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 68
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:92989490-92989708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
104-323
               

               
Cow position:
               
chr1:92996995-92996772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
73, 54
               

               
Conread position:
               
104-324
               

               
Cow position:
               
chr1:72105312-72105525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
104-324
               

               
Cow position:
               
chr1:87936800-87937016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
148, 76
               

               
Conread position:
               
104-330
               

               
Cow position:
               
chr1:3607711-3607929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
84, 110
               

               
Conread position:
               
104-330
               

               
Cow position:
               
chr1:98413671-98413897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
104-331
               

               
Cow position:
               
chr1:4391382-4391145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
104-331
               

               
Cow position:
               
chr1:7023021-7023249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 46
               

               
Conread position:
               
104-331
               

               
Cow position:
               
chr1:47886585-47886354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
79, 131
               

               
Conread position:
               
104-331
               

               
Cow position:
               
chr1:54156831-54156607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
200, 51
               

               
Conread position:
               
104-331
               

               
Cow position:
               
chr1:69695091-69694866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
104-331
               

               
Cow position:
               
chr1:78697868-78697646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
117, 17
               

               
Conread position:
               
104-331
               

               
Cow position:
               
chr1:78794324-78794105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
104-331
               

               
Cow position:
               
chr1:85550177-85549951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 75
               

               
Conread position:
               
104-332
               

               
Cow position:
               
chr1:81613290-81613516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
104-333
               

               
Cow position:
               
chr1:84104152-84103935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
104-337
               

               
Cow position:
               
chr1:55818962-55819185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
194, 41
               

               
Conread position:
               
105-323
               

               
Cow position:
               
chr1:38278132-38277911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
105-323
               

               
Cow position:
               
chr1:72813516-72813734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
76, 100
               

               
Conread position:
               
105-323
               

               
Cow position:
               
chr1:100569056-100569274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
74, 79
               

               
Conread position:
               
105-325
               

               
Cow position:
               
chr1:26427960-26427740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
105-331
               

               
Cow position:
               
chr1:6972431-6972652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
105-331
               

               
Cow position:
               
chr1:48730923-48730705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
215, 27
               

               
Conread position:
               
105-336
               

               
Cow position:
               
chr1:874552-874787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
105-382
               

               
Cow position:
               
chr1:61543016-61542749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
106-249
               

               
Cow position:
               
chr1:15169429-15169289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
106-281
               

               
Cow position:
               
chr1:45285561-45285739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
106-323
               

               
Cow position:
               
chr1:25734771-25734985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
106-323
               

               
Cow position:
               
chr1:88926483-88926264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
120, 84
               

               
Conread position:
               
106-323
               

               
Cow position:
               
chr1:100706036-100706244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
106-331
               

               
Cow position:
               
chr1:17196727-17196500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
106-331
               

               
Cow position:
               
chr1:42541499-42541725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 67
               

               
Conread position:
               
106-331
               

               
Cow position:
               
chr1:82513453-82513228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 203
               

               
Conread position:
               
107-316
               

               
Cow position:
               
chr1:45670542-45670743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
107-326
               

               
Cow position:
               
chr1:85141828-85141613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 94
               

               
Conread position:
               
107-330
               

               
Cow position:
               
chr1:78068163-78067945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
109-328
               

               
Cow position:
               
chr1:15902396-15902617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
111-331
               

               
Cow position:
               
chr1:71796406-71796185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
112-248
               

               
Cow position:
               
chr1:61724113-61723976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 84
               

               
Conread position:
               
112-250
               

               
Cow position:
               
chr1:71716419-71716554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
66, 49
               

               
Conread position:
               
112-277
               

               
Cow position:
               
chr1:55089144-55088983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
112-323
               

               
Cow position:
               
chr1:46030868-46031077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 57
               

               
Conread position:
               
112-323
               

               
Cow position:
               
chr1:49825161-49824946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
112-331
               

               
Cow position:
               
chr1:30418129-30417922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
112-332
               

               
Cow position:
               
chr1:73756337-73756122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
206, 59
               

               
Conread position:
               
114-314
               

               
Cow position:
               
chr1:25281750-25281548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
74, 139
               

               
Conread position:
               
114-323
               

               
Cow position:
               
chr1:77892053-77892253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
114-332
               

               
Cow position:
               
chr1:61846056-61846271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
115-330
               

               
Cow position:
               
chr1:30983580-30983372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
115-333
               

               
Cow position:
               
chr1:45223491-45223711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
116-327
               

               
Cow position:
               
chr1:48769716-48769924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
117-323
               

               
Cow position:
               
chr1:86340561-86340350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 130
               

               
Conread position:
               
119-323
               

               
Cow position:
               
chr1:627876-628084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 89
               

               
Conread position:
               
119-323
               

               
Cow position:
               
chr1:75250027-75250228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
63, 98
               

               
Conread position:
               
119-331
               

               
Cow position:
               
chr1:100474146-100474360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
121-291
               

               
Cow position:
               
chr1:72684614-72684778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
121-300
               

               
Cow position:
               
chr1:8374538-8374359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 51
               

               
Conread position:
               
121-300
               

               
Cow position:
               
chr1:49077416-49077236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
121-321
               

               
Cow position:
               
chr1:43822318-43822515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
121-322
               

               
Cow position:
               
chr1:8347041-8347240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
121-323
               

               
Cow position:
               
chr1:56832856-56832662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
121-323
               

               
Cow position:
               
chr1:67688662-67688465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
121-323
               

               
Cow position:
               
chr1:73458176-73457980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
168, 47
               

               
Conread position:
               
121-323
               

               
Cow position:
               
chr1:90904836-90904638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
121-331
               

               
Cow position:
               
chr1:50991852-50992060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
206, 38
               

               
Conread position:
               
121-331
               

               
Cow position:
               
chr1:65028449-65028659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 198
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chr1:48214241-48214040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
49, 131
               

               
Conread position:
               
124-330
               

               
Cow position:
               
chr1:43855222-43855421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
67, 75
               

               
Conread position:
               
125-319
               

               
Cow position:
               
chr1:52467223-52467417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
57, 136
               

               
Conread position:
               
125-331
               

               
Cow position:
               
chr1:27881534-27881734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
192, 52
               

               
Conread position:
               
125-331
               

               
Cow position:
               
chr1:98583679-98583879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 62
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr1:89388260-89388470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
127-315
               

               
Cow position:
               
chr1:4581409-4581220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 44
               

               
Conread position:
               
127-323
               

               
Cow position:
               
chr1:3323789-3323988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 177
               

               
Conread position:
               
127-330
               

               
Cow position:
               
chr1:81580093-81580302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
61, 130
               

               
Conread position:
               
127-330
               

               
Cow position:
               
chr1:98575969-98576172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
6, 13
               

               
Conread position:
               
127-331
               

               
Cow position:
               
chr1:68672676-68672476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
57, 103
               

               
Conread position:
               
128-323
               

               
Cow position:
               
chr1:35671466-35671657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
128-325
               

               
Cow position:
               
chr1:79003898-79004092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
49, 128
               

               
Conread position:
               
133-336
               

               
Cow position:
               
chr1:76658150-76657934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
135-323
               

               
Cow position:
               
chr1:2971842-2972035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
135-323
               

               
Cow position:
               
chr1:6240347-6240165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
135-331
               

               
Cow position:
               
chr1:186345-186155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 127
               

               
Conread position:
               
135-331
               

               
Cow position:
               
chr1:89158198-89157999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
136-324
               

               
Cow position:
               
chr1:78066606-78066418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
136-330
               

               
Cow position:
               
chr1:96599348-96599160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
146, 41
               

               
Conread position:
               
137-323
               

               
Cow position:
               
chr1:60986919-60987107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
137-336
               

               
Cow position:
               
chr1:102753786-102753991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 46
               

               
Conread position:
               
138-323
               

               
Cow position:
               
chr1:235820-235644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
138-331
               

               
Cow position:
               
chr1:31357576-31357383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
139-318
               

               
Cow position:
               
chr1:54216951-54217128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
139-323
               

               
Cow position:
               
chr1:19515679-19515501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
139-323
               

               
Cow position:
               
chr1:56225723-56225903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
139-331
               

               
Cow position:
               
chr1:95072265-95072458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
140-330
               

               
Cow position:
               
chr1:8624513-8624325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
140-330
               

               
Cow position:
               
chr1:33998693-33998881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
38, 112
               

               
Conread position:
               
141-323
               

               
Cow position:
               
chr1:3815757-3815567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 92
               

               
Conread position:
               
141-323
               

               
Cow position:
               
chr1:48206598-48206418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
141-331
               

               
Cow position:
               
chr1:43312091-43311905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
141-331
               

               
Cow position:
               
chr1:102768124-102768303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
142-323
               

               
Cow position:
               
chr1:80584369-80584547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
142-323
               

               
Cow position:
               
chr1:101507296-101507477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
17, 159
               

               
Conread position:
               
142-331
               

               
Cow position:
               
chr1:82942225-82942410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
167, 38
               

               
Conread position:
               
142-331
               

               
Cow position:
               
chr1:82944333-82944148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
167, 38
               

               
Conread position:
               
142-331
               

               
Cow position:
               
chr1:88359819-88360004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
143-323
               

               
Cow position:
               
chr1:22035548-22035729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
143-331
               

               
Cow position:
               
chr1:62235508-62235320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
135, 101
               

               
Conread position:
               
144-325
               

               
Cow position:
               
chr1:39121899-39121715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
144-331
               

               
Cow position:
               
chr1:17317423-17317234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 110
               

               
Conread position:
               
144-331
               

               
Cow position:
               
chr1:30862471-30862288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
144-331
               

               
Cow position:
               
chr1:95974333-95974527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
145-313
               

               
Cow position:
               
chr1:96583659-96583484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
145-323
               

               
Cow position:
               
chr1:77739657-77739839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
20, 160
               

               
Conread position:
               
145-324
               

               
Cow position:
               
chr1:44136230-44136051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 144
               

               
Conread position:
               
145-334
               

               
Cow position:
               
chr1:30504443-30504630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
145-336
               

               
Cow position:
               
chr1:31819049-31819237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
145-336
               

               
Cow position:
               
chr1:99221413-99221223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
147-323
               

               
Cow position:
               
chr1:21823312-21823480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
147-327
               

               
Cow position:
               
chr1:64218485-64218308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
148-323
               

               
Cow position:
               
chr1:81481440-81481264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
149-323
               

               
Cow position:
               
chr1:84768934-84768761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
150-364
               

               
Cow position:
               
chr1:69482005-69481785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
152-318
               

               
Cow position:
               
chr1:24571000-24570834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
152-323
               

               
Cow position:
               
chr1:57089735-57089563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
26, 140
               

               
Conread position:
               
152-323
               

               
Cow position:
               
chr1:59147398-59147227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
152-331
               

               
Cow position:
               
chr1:500121-500301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
153-329
               

               
Cow position:
               
chr1:2462329-2462501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 95
               

               
Conread position:
               
155-332
               

               
Cow position:
               
chr1:40935820-40935639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr1:84203465-84203637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
157-298
               

               
Cow position:
               
chr1:60490456-60490596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
157-322
               

               
Cow position:
               
chr1:73020709-73020544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
161-328
               

               
Cow position:
               
chr1:81582072-81582237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
164-331
               

               
Cow position:
               
chr1:8670732-8670900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
165-323
               

               
Cow position:
               
chr1:95835836-95835680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
168-331
               

               
Cow position:
               
chr1:71916155-71915994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
170-364
               

               
Cow position:
               
chr1:42178704-42178905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 181
               

               
Conread position:
               
171-331
               

               
Cow position:
               
chr1:101177483-101177641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
96, 16
               

               
Conread position:
               
171-336
               

               
Cow position:
               
chr1:242523-242690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
173-323
               

               
Cow position:
               
chr1:72422440-72422291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
176-316
               

               
Cow position:
               
chr1:5006134-5006272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
176-329
               

               
Cow position:
               
chr1:67529026-67529179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
176-331
               

               
Cow position:
               
chr1:73721331-73721489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
123, 136
               

               
Conread position:
               
177-331
               

               
Cow position:
               
chr1:67654347-67654193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
151, 9
               

               
Conread position:
               
178-331
               

               
Cow position:
               
chr1:102648251-102648406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
179-331
               

               
Cow position:
               
chr1:95618616-95618768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
180-323
               

               
Cow position:
               
chr1:102468641-102468499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
183-323
               

               
Cow position:
               
chr1:38706876-38706736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
183-329
               

               
Cow position:
               
chr1:83618630-83618481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
80, 147
               

               
Conread position:
               
183-331
               

               
Cow position:
               
chr1:13576908-13576754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
183-331
               

               
Cow position:
               
chr1:54157272-54157422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
184-323
               

               
Cow position:
               
chr1:20864036-20864171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
184-329
               

               
Cow position:
               
chr1:88338646-88338790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
136, 116
               

               
Conread position:
               
184-331
               

               
Cow position:
               
chr1:3914939-3914793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
184-331
               

               
Cow position:
               
chr1:55753236-55753088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
136, 38
               

               
Conread position:
               
184-331
               

               
Cow position:
               
chr1:68127211-68127063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
185-323
               

               
Cow position:
               
chr1:41027055-41027192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
185-323
               

               
Cow position:
               
chr1:49980690-49980827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
185-331
               

               
Cow position:
               
chr1:43148568-43148417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
185-331
               

               
Cow position:
               
chr1:63078990-63079133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
185-334
               

               
Cow position:
               
chr1:81515213-81515362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
186-323
               

               
Cow position:
               
chr1:31855267-31855129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
186-336
               

               
Cow position:
               
chr1:6381753-6381904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
131, 101
               

               
Conread position:
               
186-336
               

               
Cow position:
               
chr1:45315655-45315503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
187-316
               

               
Cow position:
               
chr1:73719443-73719572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
187-331
               

               
Cow position:
               
chr1:65881789-65881931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
187-331
               

               
Cow position:
               
chr1:69940841-69940696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
188-323
               

               
Cow position:
               
chr1:5751296-5751431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
188-327
               

               
Cow position:
               
chr1:38205457-38205596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
188-329
               

               
Cow position:
               
chr1:81858919-81858775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
188-336
               

               
Cow position:
               
chr1:45478876-45478730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 53
               

               
Conread position:
               
188-336
               

               
Cow position:
               
chr1:67918740-67918890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
188-337
               

               
Cow position:
               
chr1:74081998-74081850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
189-323
               

               
Cow position:
               
chr1:3417332-3417473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
189-331
               

               
Cow position:
               
chr1:65638899-65639036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
190-331
               

               
Cow position:
               
chr1:45874093-45873944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
190-334
               

               
Cow position:
               
chr1:61011166-61011312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
193-323
               

               
Cow position:
               
chr1:64019533-64019403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
194-324
               

               
Cow position:
               
chr1:19304561-19304689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
195-321
               

               
Cow position:
               
chr1:95152861-95152987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
62, 55
               

               
Conread position:
               
195-331
               

               
Cow position:
               
chr1:22461248-22461112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
198-331
               

               
Cow position:
               
chr1:98683867-98683999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
200-323
               

               
Cow position:
               
chr1:73551515-73551390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
208-331
               

               
Cow position:
               
chr1:32014201-32014322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
208-336
               

               
Cow position:
               
chr1:53640718-53640845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
112, 43
               

               
Conread position:
               
209-318
               

               
Cow position:
               
chr1:6989154-6989263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
210-323
               

               
Cow position:
               
chr1:31630282-31630169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
211-331
               

               
Cow position:
               
chr1:55194240-55194121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
212-321
               

               
Cow position:
               
chr1:22153701-22153809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
212-331
               

               
Cow position:
               
chr1:19855164-19855280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
110, 29
               

               
Conread position:
               
216-323
               

               
Cow position:
               
chr1:81638559-81638666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
216-330
               

               
Cow position:
               
chr1:46100829-46100715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
218-331
               

               
Cow position:
               
chr1:70416747-70416633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
222-331
               

               
Cow position:
               
chr1:99024214-99024105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.