Cow genome map
| Conread name: | Pla1-C0000023_J16 |
| Conread position: | 145-401 |
| Cow position: | chr10:55094795-55094528 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 147-405 |
| Cow position: | chr10:21399158-21399424 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 179-403 |
| Cow position: | chr10:22566625-22566852 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 180-405 |
| Cow position: | chr10:31525243-31525023 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 151, 8 |
| Conread position: | 181-403 |
| Cow position: | chr10:55285447-55285217 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 69, 22 |
| Conread position: | 181-404 |
| Cow position: | chr10:41158919-41158702 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 73 |
| Conread position: | 191-393 |
| Cow position: | chr10:29109499-29109702 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 191-401 |
| Cow position: | chr10:20375355-20375573 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 16, 116 |
| Conread position: | 191-401 |
| Cow position: | chr10:40150781-40150994 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 57, 85 |
| Conread position: | 193-399 |
| Cow position: | chr10:39181277-39181056 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 193-399 |
| Cow position: | chr10:41878404-41878183 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-401 |
| Cow position: | chr10:37771366-37771144 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-401 |
| Cow position: | chr10:38544455-38544667 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 193-403 |
| Cow position: | chr10:19841160-19840938 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr10:1665051-1665277 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 193-405 |
| Cow position: | chr10:7897001-7897228 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr10:14805327-14805100 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 193-405 |
| Cow position: | chr10:19494808-19495034 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr10:21739274-21739493 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 193-405 |
| Cow position: | chr10:28255935-28256162 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 193-405 |
| Cow position: | chr10:28643021-28642791 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr10:41568582-41568355 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr10:44708130-44708357 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr10:57555854-57556081 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 194-369 |
| Cow position: | chr10:68160157-68160346 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 194-389 |
| Cow position: | chr10:1378976-1378770 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 194-392 |
| Cow position: | chr10:28529993-28530182 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 58, 84 |
| Conread position: | 194-397 |
| Cow position: | chr10:53320913-53321132 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 194-401 |
| Cow position: | chr10:54930729-54930947 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 54, 7 |
| Conread position: | 194-402 |
| Cow position: | chr10:14863137-14862928 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 194-403 |
| Cow position: | chr10:126769-126543 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 194-403 |
| Cow position: | chr10:47788160-47787946 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 194-405 |
| Cow position: | chr10:38849761-38849543 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 194-405 |
| Cow position: | chr10:50136048-50135827 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 11, 127 |
| Conread position: | 195-401 |
| Cow position: | chr10:42111899-42111679 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 199 |
| Conread position: | 196-395 |
| Cow position: | chr10:20382548-20382754 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 200-401 |
| Cow position: | chr10:17433820-17433615 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 205-399 |
| Cow position: | chr10:33870753-33870545 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 205-399 |
| Cow position: | chr10:39814930-39815138 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 39, 103 |
| Conread position: | 205-401 |
| Cow position: | chr10:6538862-6538645 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 205-401 |
| Cow position: | chr10:7280637-7280844 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 101 |
| Conread position: | 205-401 |
| Cow position: | chr10:14334366-14334587 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 205-401 |
| Cow position: | chr10:19513045-19512839 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 115 |
| Conread position: | 205-401 |
| Cow position: | chr10:22102706-22102495 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 205-401 |
| Cow position: | chr10:29631330-29631540 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 205-401 |
| Cow position: | chr10:29845184-29845387 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 106 |
| Conread position: | 205-401 |
| Cow position: | chr10:30684024-30684234 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 205-401 |
| Cow position: | chr10:32702195-32701986 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 41, 112 |
| Conread position: | 205-401 |
| Cow position: | chr10:39039826-39040037 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 205-401 |
| Cow position: | chr10:39778653-39778857 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 40, 150 |
| Conread position: | 205-401 |
| Cow position: | chr10:48397632-48397840 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 103 |
| Conread position: | 205-401 |
| Cow position: | chr10:57988526-57988736 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 205-401 |
| Cow position: | chr10:62407309-62407519 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 205-402 |
| Cow position: | chr10:21488426-21488223 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 41, 105 |
| Conread position: | 205-403 |
| Cow position: | chr10:38343889-38344104 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 205-405 |
| Cow position: | chr10:21898636-21898832 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 33, 84 |
| Conread position: | 205-405 |
| Cow position: | chr10:36468995-36469196 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 126 |
| Conread position: | 205-405 |
| Cow position: | chr10:47908402-47908188 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 207-397 |
| Cow position: | chr10:28946942-28946745 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 208-401 |
| Cow position: | chr10:16478219-16478020 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 148 |
| Conread position: | 208-405 |
| Cow position: | chr10:11684167-11684377 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 208-405 |
| Cow position: | chr10:29011199-29011398 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 215-405 |
| Cow position: | chr10:27663808-27664012 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 239-401 |
| Cow position: | chr10:16926965-16926791 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 275-403 |
| Cow position: | chr10:279218-279352 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
Show alignments to all cow chromosomes.