Cow genome map
| Conread name: | Pla1-C0000023_J16 |
| Conread position: | 136-401 |
| Cow position: | chr8:45145593-45145873 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 145-405 |
| Cow position: | chr8:8516897-8517170 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 161-403 |
| Cow position: | chr8:34109563-34109309 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 176-405 |
| Cow position: | chr8:1320711-1320470 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 182-400 |
| Cow position: | chr8:42158338-42158558 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 30, 82 |
| Conread position: | 189-374 |
| Cow position: | chr8:45450375-45450183 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 103 |
| Conread position: | 193-393 |
| Cow position: | chr8:47453945-47454156 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-399 |
| Cow position: | chr8:2887406-2887185 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 193-400 |
| Cow position: | chr8:40891826-40892039 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 15, 113 |
| Conread position: | 193-401 |
| Cow position: | chr8:7162551-7162331 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-401 |
| Cow position: | chr8:22129227-22129007 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 15, 105 |
| Conread position: | 193-403 |
| Cow position: | chr8:21205228-21205015 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 193-403 |
| Cow position: | chr8:39194560-39194786 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr8:6064129-6064356 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr8:9736896-9736673 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr8:14256733-14256506 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr8:14631010-14631239 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr8:22570651-22570878 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 193-405 |
| Cow position: | chr8:25775007-25775241 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr8:27580053-27579826 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr8:32436429-32436654 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 10, 115 |
| Conread position: | 193-405 |
| Cow position: | chr8:32630379-32630605 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 193-405 |
| Cow position: | chr8:34349324-34349102 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 125 |
| Conread position: | 193-405 |
| Cow position: | chr8:37654205-37654432 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 193-405 |
| Cow position: | chr8:37655902-37656129 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 194-353 |
| Cow position: | chr8:11565408-11565244 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 194-399 |
| Cow position: | chr8:4688054-4687834 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 194-400 |
| Cow position: | chr8:3786283-3786073 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 13, 53 |
| Conread position: | 194-400 |
| Cow position: | chr8:38605560-38605775 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 131 |
| Conread position: | 194-401 |
| Cow position: | chr8:3855372-3855591 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 13, 123 |
| Conread position: | 194-401 |
| Cow position: | chr8:9539050-9539255 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 194-401 |
| Cow position: | chr8:11803474-11803257 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 32, 73 |
| Conread position: | 194-401 |
| Cow position: | chr8:33590035-33589813 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 194-401 |
| Cow position: | chr8:45691358-45691577 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 129 |
| Conread position: | 194-403 |
| Cow position: | chr8:12802064-12801838 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 194-403 |
| Cow position: | chr8:41644032-41644241 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 14, 82 |
| Conread position: | 194-403 |
| Cow position: | chr8:50959957-50960170 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 148 |
| Conread position: | 194-405 |
| Cow position: | chr8:23134957-23135179 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 194-405 |
| Cow position: | chr8:25524051-25523829 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 194-405 |
| Cow position: | chr8:47674498-47674275 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 195-397 |
| Cow position: | chr8:28878666-28878452 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 202-361 |
| Cow position: | chr8:32648152-32647989 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 53, 154 |
| Conread position: | 205-386 |
| Cow position: | chr8:46218112-46218300 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 45, 94 |
| Conread position: | 205-391 |
| Cow position: | chr8:6764645-6764847 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 205-397 |
| Cow position: | chr8:8912124-8911919 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 101 |
| Conread position: | 205-400 |
| Cow position: | chr8:49697348-49697556 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 111 |
| Conread position: | 205-401 |
| Cow position: | chr8:5017827-5017615 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 41, 112 |
| Conread position: | 205-401 |
| Cow position: | chr8:8400472-8400679 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 205-401 |
| Cow position: | chr8:12542290-12542465 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 205-401 |
| Cow position: | chr8:14927245-14927448 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 205-401 |
| Cow position: | chr8:19052092-19051883 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 105 |
| Conread position: | 205-401 |
| Cow position: | chr8:21157150-21157357 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 39, 104 |
| Conread position: | 205-401 |
| Cow position: | chr8:29008271-29008072 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 205-401 |
| Cow position: | chr8:31252135-31251936 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 205-401 |
| Cow position: | chr8:32317902-32318117 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 205-401 |
| Cow position: | chr8:36634869-36635072 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 41, 100 |
| Conread position: | 205-401 |
| Cow position: | chr8:46051825-46051614 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 205-401 |
| Cow position: | chr8:47075802-47075594 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 194 |
| Conread position: | 205-401 |
| Cow position: | chr8:47660681-47660885 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 41, 99 |
| Conread position: | 205-401 |
| Cow position: | chr8:49859127-49859330 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 151 |
| Conread position: | 205-401 |
| Cow position: | chr8:50929474-50929681 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 41, 118 |
| Conread position: | 205-401 |
| Cow position: | chr8:53428127-53427929 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 205-401 |
| Cow position: | chr8:54016907-54017117 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 205-401 |
| Cow position: | chr8:58184953-58185155 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 205-401 |
| Cow position: | chr8:59261299-59261493 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 205-401 |
| Cow position: | chr8:60062037-60061834 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 205-403 |
| Cow position: | chr8:1347610-1347822 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 191 |
| Conread position: | 205-403 |
| Cow position: | chr8:23772286-23772073 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 205-403 |
| Cow position: | chr8:42485555-42485348 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 205-404 |
| Cow position: | chr8:10749995-10749790 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 205-405 |
| Cow position: | chr8:2168880-2169093 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 205-405 |
| Cow position: | chr8:25377619-25377413 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 146 |
| Conread position: | 205-405 |
| Cow position: | chr8:32041123-32041332 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 205-405 |
| Cow position: | chr8:33325692-33325478 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 205-405 |
| Cow position: | chr8:37932736-37932526 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 212-401 |
| Cow position: | chr8:44108350-44108150 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 33, 102 |
| Conread position: | 215-401 |
| Cow position: | chr8:30486746-30486945 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 216-378 |
| Cow position: | chr8:21230706-21230538 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 87 |
| Conread position: | 225-395 |
| Cow position: | chr8:1118139-1117960 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 30, 148 |
| Conread position: | 226-401 |
| Cow position: | chr8:49216345-49216166 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 109, 74 |
| Conread position: | 227-405 |
| Cow position: | chr8:19331323-19331144 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 12 |
| Conread position: | 242-401 |
| Cow position: | chr8:25409331-25409163 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 12 |
Show alignments to all cow chromosomes.