Cow genome map

Conread name: Pla1-C0000023_J16

Conread position: 98-400
Cow position: chr9:16177152-16176854 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 213
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 43, 28

Conread position: 145-403
Cow position: chr9:59481443-59481713 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 200
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 23, 45

Conread position: 145-405
Cow position: chr9:47043314-47043038 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 194
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 26

Conread position: 176-405
Cow position: chr9:2871649-2871405 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 32, 16

Conread position: 193-380
Cow position: chr9:50792019-50791817 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 193-396
Cow position: chr9:2679573-2679360 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 200

Conread position: 193-397
Cow position: chr9:59428312-59428099 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 15, 130

Conread position: 193-399
Cow position: chr9:4942503-4942724 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 12, 0

Conread position: 193-399
Cow position: chr9:44384569-44384348 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 193-401
Cow position: chr9:1981573-1981360 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 14, 116

Conread position: 193-401
Cow position: chr9:3004938-3005153 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 15, 0

Conread position: 193-401
Cow position: chr9:10937901-10937681 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 19, 122

Conread position: 193-401
Cow position: chr9:38677453-38677230 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 15, 0

Conread position: 193-403
Cow position: chr9:3309922-3309705 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 111

Conread position: 193-405
Cow position: chr9:17063078-17063301 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 15, 0

Conread position: 193-405
Cow position: chr9:25034255-25034482 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 193-405
Cow position: chr9:28679281-28679054 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 193-405
Cow position: chr9:46859153-46859380 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 193-405
Cow position: chr9:51211989-51211763 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 23

Conread position: 194-369
Cow position: chr9:9562740-9562923 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 41, 14

Conread position: 194-394
Cow position: chr9:60462620-60462809 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 14, 60

Conread position: 194-397
Cow position: chr9:50698605-50698393 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 25

Conread position: 194-401
Cow position: chr9:1995081-1995304 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 173
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 14, 0

Conread position: 194-401
Cow position: chr9:2497666-2497893 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 194-401
Cow position: chr9:13474468-13474685 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 13, 174

Conread position: 194-401
Cow position: chr9:18508518-18508736 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 13, 109

Conread position: 194-401
Cow position: chr9:22654884-22654662 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 178
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 11, 0

Conread position: 194-401
Cow position: chr9:37969903-37970121 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 15, 0

Conread position: 194-401
Cow position: chr9:39730756-39730972 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 94

Conread position: 194-401
Cow position: chr9:59537403-59537181 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 172
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 14, 134

Conread position: 194-403
Cow position: chr9:3962818-3963047 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 194-404
Cow position: chr9:22089811-22089600 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 11, 112

Conread position: 195-405
Cow position: chr9:25188401-25188182 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 175
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 13, 118

Conread position: 196-397
Cow position: chr9:30191085-30191293 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 55, 80

Conread position: 202-403
Cow position: chr9:9014371-9014167 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 62, 40

Conread position: 202-405
Cow position: chr9:19158238-19158457 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 111

Conread position: 205-381
Cow position: chr9:18211544-18211357 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 205-396
Cow position: chr9:827812-828017 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 161
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 47, 0

Conread position: 205-396
Cow position: chr9:3372032-3372225 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 58, 34

Conread position: 205-400
Cow position: chr9:4836047-4836254 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 71, 116

Conread position: 205-400
Cow position: chr9:32970237-32970034 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 41

Conread position: 205-401
Cow position: chr9:650732-650941 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 31, 16

Conread position: 205-401
Cow position: chr9:3727885-3727688 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 139
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 41, 69

Conread position: 205-401
Cow position: chr9:4533786-4533580 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 55, 41

Conread position: 205-401
Cow position: chr9:6250594-6250385 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 39, 184

Conread position: 205-401
Cow position: chr9:10323097-10322887 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 205-401
Cow position: chr9:17304682-17304891 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 41, 115

Conread position: 205-401
Cow position: chr9:17901270-17901478 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 41, 102

Conread position: 205-401
Cow position: chr9:20939604-20939405 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 56, 64

Conread position: 205-401
Cow position: chr9:21410594-21410383 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 164
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 31, 0

Conread position: 205-401
Cow position: chr9:26083276-26083471 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 56, 76

Conread position: 205-401
Cow position: chr9:27783484-27783274 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 205-401
Cow position: chr9:28023096-28022892 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 31, 10

Conread position: 205-401
Cow position: chr9:29026914-29027125 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 39, 147

Conread position: 205-401
Cow position: chr9:29627458-29627671 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 205-401
Cow position: chr9:30673673-30673461 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 36, 0

Conread position: 205-401
Cow position: chr9:31808877-31808663 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 205-401
Cow position: chr9:37161517-37161726 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 0

Conread position: 205-401
Cow position: chr9:44819437-44819232 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 205-401
Cow position: chr9:51180886-51181091 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 162
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 51, 101

Conread position: 205-403
Cow position: chr9:42310971-42310761 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 41, 10

Conread position: 205-405
Cow position: chr9:779533-779739 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 205-405
Cow position: chr9:4649319-4649526 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 103

Conread position: 205-405
Cow position: chr9:27935673-27935459 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 206-401
Cow position: chr9:47003469-47003272 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 129, 40

Conread position: 207-405
Cow position: chr9:7060785-7061001 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 39, 0

Conread position: 209-401
Cow position: chr9:26737044-26736839 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 32, 0

Conread position: 218-397
Cow position: chr9:20307728-20307924 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 13, 138

Conread position: 226-405
Cow position: chr9:25903774-25903587 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 53, 11

Conread position: 247-405
Cow position: chr9:5798548-5798715 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.