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Cow genome map

           
Conread name:
           
Pla1-C0000024_H24
        

               
Conread position:
               
3-237
               

               
Cow position:
               
chr29:24578524-24578757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 46
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr29:798820-798573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 223
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr29:254732-254981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
128, 15
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chr29:32809099-32809362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 33
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr29:9511880-9512126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
128, 18
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chr29:41076390-41076112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr29:2623842-2623560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
3-286
               

               
Cow position:
               
chr29:12679796-12680084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
3-286
               

               
Cow position:
               
chr29:13634654-13634375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
128, 30
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr29:40852578-40852859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
112, 32
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chr29:94897-94628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
237, 28
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr29:2522225-2522498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
55, 28
               

               
Conread position:
               
9-280
               

               
Cow position:
               
chr29:4875255-4874973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
24-281
               

               
Cow position:
               
chr29:6775318-6775069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
31-199
               

               
Cow position:
               
chr29:43517012-43516842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
31-228
               

               
Cow position:
               
chr29:45466630-45466830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
31-288
               

               
Cow position:
               
chr29:477774-478035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
11, 85
               

               
Conread position:
               
45-286
               

               
Cow position:
               
chr29:11915496-11915746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
45-286
               

               
Cow position:
               
chr29:16309434-16309668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
50-264
               

               
Cow position:
               
chr29:5046584-5046373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
50-276
               

               
Cow position:
               
chr29:356015-356241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
50-285
               

               
Cow position:
               
chr29:6217853-6217623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 47
               

               
Conread position:
               
51-189
               

               
Cow position:
               
chr29:1886987-1886847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
51-239
               

               
Cow position:
               
chr29:30844450-30844638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 141
               

               
Conread position:
               
51-264
               

               
Cow position:
               
chr29:2626232-2626024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
150, 65
               

               
Conread position:
               
51-288
               

               
Cow position:
               
chr29:19761963-19762204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
52-279
               

               
Cow position:
               
chr29:24604453-24604226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
149, 20
               

               
Conread position:
               
53-260
               

               
Cow position:
               
chr29:2263335-2263122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
53-288
               

               
Cow position:
               
chr29:109401-109631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
54-286
               

               
Cow position:
               
chr29:4065781-4066012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
62-280
               

               
Cow position:
               
chr29:732321-732537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 31
               

               
Conread position:
               
62-286
               

               
Cow position:
               
chr29:6844926-6844702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
131, 21
               

               
Conread position:
               
64-244
               

               
Cow position:
               
chr29:22339511-22339329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
64-255
               

               
Cow position:
               
chr29:2367077-2366883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
67, 40
               

               
Conread position:
               
64-279
               

               
Cow position:
               
chr29:6014806-6015022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
64-286
               

               
Cow position:
               
chr29:26771144-26771360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
64-287
               

               
Cow position:
               
chr29:2984590-2984815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
178, 61
               

               
Conread position:
               
66-264
               

               
Cow position:
               
chr29:35797593-35797792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 139
               

               
Conread position:
               
66-284
               

               
Cow position:
               
chr29:35459068-35458854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
66-286
               

               
Cow position:
               
chr29:9139113-9139339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
66-286
               

               
Cow position:
               
chr29:22175398-22175613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
122, 59
               

               
Conread position:
               
66-288
               

               
Cow position:
               
chr29:30812455-30812676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
70, 52
               

               
Conread position:
               
67-288
               

               
Cow position:
               
chr29:11696240-11696458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
68-257
               

               
Cow position:
               
chr29:23743330-23743150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
69-281
               

               
Cow position:
               
chr29:28195812-28195592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
24, 152
               

               
Conread position:
               
72-286
               

               
Cow position:
               
chr29:34360083-34359876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
73-286
               

               
Cow position:
               
chr29:19338692-19338913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
74-286
               

               
Cow position:
               
chr29:31928692-31928907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
57, 78
               

               
Conread position:
               
74-288
               

               
Cow position:
               
chr29:5099049-5098832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
57, 145
               

               
Conread position:
               
75-284
               

               
Cow position:
               
chr29:9911892-9912096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
75-286
               

               
Cow position:
               
chr29:25333738-25333536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
75-286
               

               
Cow position:
               
chr29:36404535-36404748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
78-246
               

               
Cow position:
               
chr29:45588757-45588587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
78-259
               

               
Cow position:
               
chr29:18085307-18085492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
53, 142
               

               
Conread position:
               
78-276
               

               
Cow position:
               
chr29:14501310-14501513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
15, 54
               

               
Conread position:
               
78-287
               

               
Cow position:
               
chr29:9686285-9686075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
6, 114
               

               
Conread position:
               
79-276
               

               
Cow position:
               
chr29:5892566-5892764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
12, 29
               

               
Conread position:
               
79-284
               

               
Cow position:
               
chr29:40891984-40891772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
79-286
               

               
Cow position:
               
chr29:11365965-11366162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
79-286
               

               
Cow position:
               
chr29:37785461-37785243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
80-286
               

               
Cow position:
               
chr29:40299287-40299084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
81-276
               

               
Cow position:
               
chr29:41811858-41811666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 101
               

               
Conread position:
               
81-286
               

               
Cow position:
               
chr29:21534958-21534750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
107, 63
               

               
Conread position:
               
81-286
               

               
Cow position:
               
chr29:37292496-37292705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
5, 120
               

               
Conread position:
               
82-280
               

               
Cow position:
               
chr29:8669076-8669287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
82-280
               

               
Cow position:
               
chr29:35636144-35636350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 117
               

               
Conread position:
               
82-281
               

               
Cow position:
               
chr29:25088474-25088673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
51, 184
               

               
Conread position:
               
82-284
               

               
Cow position:
               
chr29:34736745-34736544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 119
               

               
Conread position:
               
83-281
               

               
Cow position:
               
chr29:4120568-4120769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
161, 110
               

               
Conread position:
               
83-284
               

               
Cow position:
               
chr29:4367443-4367646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
85-281
               

               
Cow position:
               
chr29:32521593-32521791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
116, 160
               

               
Conread position:
               
85-286
               

               
Cow position:
               
chr29:4480449-4480246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
5, 49
               

               
Conread position:
               
85-287
               

               
Cow position:
               
chr29:30367299-30367110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
85-288
               

               
Cow position:
               
chr29:40165965-40166174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
6, 99
               

               
Conread position:
               
86-281
               

               
Cow position:
               
chr29:20178399-20178204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
86-286
               

               
Cow position:
               
chr29:2644580-2644377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
114, 39
               

               
Conread position:
               
86-286
               

               
Cow position:
               
chr29:40117296-40117494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 40
               

               
Conread position:
               
86-288
               

               
Cow position:
               
chr29:26285307-26285107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
87-260
               

               
Cow position:
               
chr29:13040826-13040653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
87-286
               

               
Cow position:
               
chr29:18072654-18072861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 190
               

               
Conread position:
               
87-286
               

               
Cow position:
               
chr29:23874181-23874385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
5, 184
               

               
Conread position:
               
88-264
               

               
Cow position:
               
chr29:40337797-40337623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 90
               

               
Conread position:
               
88-281
               

               
Cow position:
               
chr29:32799976-32799787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
88-286
               

               
Cow position:
               
chr29:26616002-26615796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
89-286
               

               
Cow position:
               
chr29:13615915-13615711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
90-286
               

               
Cow position:
               
chr29:20674077-20673873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
90-286
               

               
Cow position:
               
chr29:39567417-39567613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-287
               

               
Cow position:
               
chr29:17109699-17109895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
36, 116
               

               
Conread position:
               
90-287
               

               
Cow position:
               
chr29:21000370-21000570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
91-278
               

               
Cow position:
               
chr29:20626307-20626494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
152, 96
               

               
Conread position:
               
91-286
               

               
Cow position:
               
chr29:31926560-31926363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
40, 75
               

               
Conread position:
               
91-286
               

               
Cow position:
               
chr29:41530580-41530773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
128, 149
               

               
Conread position:
               
91-288
               

               
Cow position:
               
chr29:21443614-21443413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
92-205
               

               
Cow position:
               
chr29:15289471-15289586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
92-233
               

               
Cow position:
               
chr29:7290627-7290772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
92-239
               

               
Cow position:
               
chr29:1582895-1582744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 49
               

               
Conread position:
               
92-243
               

               
Cow position:
               
chr29:16302566-16302423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
92-258
               

               
Cow position:
               
chr29:40894672-40894832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
92-259
               

               
Cow position:
               
chr29:29066157-29066325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
92-262
               

               
Cow position:
               
chr29:26559789-26559625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
92-264
               

               
Cow position:
               
chr29:22720859-22721036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
108, 64
               

               
Conread position:
               
92-274
               

               
Cow position:
               
chr29:750167-749990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
150, 33
               

               
Conread position:
               
92-274
               

               
Cow position:
               
chr29:4328165-4328338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-274
               

               
Cow position:
               
chr29:7041104-7040922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
92-276
               

               
Cow position:
               
chr29:11136157-11135975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
101, 71
               

               
Conread position:
               
92-277
               

               
Cow position:
               
chr29:7408158-7407968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
92-277
               

               
Cow position:
               
chr29:23119646-23119459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
108, 33
               

               
Conread position:
               
92-277
               

               
Cow position:
               
chr29:32308593-32308405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
92-278
               

               
Cow position:
               
chr29:8164132-8163940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
38, 145
               

               
Conread position:
               
92-278
               

               
Cow position:
               
chr29:17543181-17543365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 174
               

               
Conread position:
               
92-279
               

               
Cow position:
               
chr29:4625262-4625074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
92-279
               

               
Cow position:
               
chr29:26130514-26130706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 162
               

               
Conread position:
               
92-280
               

               
Cow position:
               
chr29:34745923-34745741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
86, 97
               

               
Conread position:
               
92-281
               

               
Cow position:
               
chr29:17374-17183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
39, 101
               

               
Conread position:
               
92-281
               

               
Cow position:
               
chr29:1307133-1306937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-281
               

               
Cow position:
               
chr29:18781597-18781787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 33
               

               
Conread position:
               
92-281
               

               
Cow position:
               
chr29:22948932-22948739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
12, 166
               

               
Conread position:
               
92-281
               

               
Cow position:
               
chr29:29477301-29477113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
40, 141
               

               
Conread position:
               
92-281
               

               
Cow position:
               
chr29:38581700-38581897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
108, 52
               

               
Conread position:
               
92-284
               

               
Cow position:
               
chr29:686460-686262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
92-284
               

               
Cow position:
               
chr29:8125862-8125667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
109, 33
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:87286-87090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
108, 39
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:465671-465472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
39, 184
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:699878-699690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:1325172-1325366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
106, 46
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:2744541-2744346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:3395841-3396032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 112
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:6293736-6293548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
149, 84
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:6635835-6636025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 107
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:10156558-10156379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:10456821-10456633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:11684743-11684933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
39, 108
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:12005033-12004835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
136, 112
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:15738613-15738416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:15944300-15944499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:18878770-18878570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:19125091-19125269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:26017780-26017576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:26335647-26335450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 144
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:26673172-26672979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:32290333-32290534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:35501917-35501725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:36216849-36217043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr29:40096696-40096889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
108, 33
               

               
Conread position:
               
92-288
               

               
Cow position:
               
chr29:1956358-1956160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 180
               

               
Conread position:
               
92-288
               

               
Cow position:
               
chr29:2071837-2071645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
154, 103
               

               
Conread position:
               
92-288
               

               
Cow position:
               
chr29:28775723-28775529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
92-288
               

               
Cow position:
               
chr29:29056914-29057111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
23, 72
               

               
Conread position:
               
93-275
               

               
Cow position:
               
chr29:26318926-26319098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
93-280
               

               
Cow position:
               
chr29:35291831-35292010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
93-281
               

               
Cow position:
               
chr29:34744886-34744695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
94-280
               

               
Cow position:
               
chr29:35434603-35434793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
37, 178
               

               
Conread position:
               
94-281
               

               
Cow position:
               
chr29:15940905-15940713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 158
               

               
Conread position:
               
94-286
               

               
Cow position:
               
chr29:16657424-16657616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
106, 31
               

               
Conread position:
               
94-286
               

               
Cow position:
               
chr29:24345731-24345524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
94-286
               

               
Cow position:
               
chr29:24952419-24952614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
106, 53
               

               
Conread position:
               
94-286
               

               
Cow position:
               
chr29:29974774-29974969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
37, 74
               

               
Conread position:
               
94-286
               

               
Cow position:
               
chr29:37961241-37961051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
94-286
               

               
Cow position:
               
chr29:45005883-45005699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
95-276
               

               
Cow position:
               
chr29:17607150-17607337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
95-276
               

               
Cow position:
               
chr29:40902985-40902804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
95-279
               

               
Cow position:
               
chr29:19756182-19756366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 106
               

               
Conread position:
               
95-280
               

               
Cow position:
               
chr29:9709433-9709615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
89, 94
               

               
Conread position:
               
95-281
               

               
Cow position:
               
chr29:9638578-9638396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
44, 118
               

               
Conread position:
               
95-281
               

               
Cow position:
               
chr29:35281237-35281418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
147, 37
               

               
Conread position:
               
95-284
               

               
Cow position:
               
chr29:16609472-16609666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
95-285
               

               
Cow position:
               
chr29:28197274-28197080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
36, 152
               

               
Conread position:
               
95-286
               

               
Cow position:
               
chr29:961653-961850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
36, 176
               

               
Conread position:
               
95-286
               

               
Cow position:
               
chr29:2415077-2414888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
118, 36
               

               
Conread position:
               
95-286
               

               
Cow position:
               
chr29:40583531-40583719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 105
               

               
Conread position:
               
95-286
               

               
Cow position:
               
chr29:45650608-45650417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
150, 52
               

               
Conread position:
               
96-241
               

               
Cow position:
               
chr29:30227399-30227548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
96-244
               

               
Cow position:
               
chr29:29632202-29632049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
96-259
               

               
Cow position:
               
chr29:21665705-21665869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
96-281
               

               
Cow position:
               
chr29:28868366-28868557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
96-286
               

               
Cow position:
               
chr29:26734768-26734955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
36, 105
               

               
Conread position:
               
96-286
               

               
Cow position:
               
chr29:36530598-36530793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
96-286
               

               
Cow position:
               
chr29:39111573-39111389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
96-286
               

               
Cow position:
               
chr29:44233216-44233024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 118
               

               
Conread position:
               
96-288
               

               
Cow position:
               
chr29:12798663-12798847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
7, 57
               

               
Conread position:
               
97-263
               

               
Cow position:
               
chr29:42939617-42939451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
97-265
               

               
Cow position:
               
chr29:38760421-38760252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
97-281
               

               
Cow position:
               
chr29:18748848-18748660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
103, 28
               

               
Conread position:
               
97-286
               

               
Cow position:
               
chr29:5948051-5947867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
36, 130
               

               
Conread position:
               
98-286
               

               
Cow position:
               
chr29:13372400-13372591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
100-281
               

               
Cow position:
               
chr29:41850074-41849888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
100-285
               

               
Cow position:
               
chr29:44310290-44310101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
100-286
               

               
Cow position:
               
chr29:1556671-1556857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 167
               

               
Conread position:
               
100-286
               

               
Cow position:
               
chr29:1933819-1933628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
100-286
               

               
Cow position:
               
chr29:18212243-18212065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 115
               

               
Conread position:
               
100-286
               

               
Cow position:
               
chr29:42848966-42849149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 93
               

               
Conread position:
               
100-288
               

               
Cow position:
               
chr29:6813182-6813373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
99, 32
               

               
Conread position:
               
101-276
               

               
Cow position:
               
chr29:26298722-26298898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
101-281
               

               
Cow position:
               
chr29:7956244-7956065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
30, 148
               

               
Conread position:
               
101-285
               

               
Cow position:
               
chr29:16756795-16756984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
103-232
               

               
Cow position:
               
chr29:38731367-38731491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
103-262
               

               
Cow position:
               
chr29:36356593-36356749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 94
               

               
Conread position:
               
103-272
               

               
Cow position:
               
chr29:34297823-34297659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 144
               

               
Conread position:
               
103-278
               

               
Cow position:
               
chr29:21196908-21196734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
139, 152
               

               
Conread position:
               
103-281
               

               
Cow position:
               
chr29:43328379-43328561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
103-286
               

               
Cow position:
               
chr29:4804975-4805158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
103-286
               

               
Cow position:
               
chr29:19389228-19389413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 74
               

               
Conread position:
               
103-286
               

               
Cow position:
               
chr29:19428410-19428585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
139, 26
               

               
Conread position:
               
103-286
               

               
Cow position:
               
chr29:21236858-21237042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
103-286
               

               
Cow position:
               
chr29:21924952-21925136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
103-286
               

               
Cow position:
               
chr29:21933371-21933186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 97
               

               
Conread position:
               
103-286
               

               
Cow position:
               
chr29:26329960-26330135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
103-286
               

               
Cow position:
               
chr29:29547986-29548168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
103-286
               

               
Cow position:
               
chr29:37599462-37599281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
142, 114
               

               
Conread position:
               
103-287
               

               
Cow position:
               
chr29:42364272-42364087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
96, 22
               

               
Conread position:
               
103-288
               

               
Cow position:
               
chr29:3237617-3237427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 122
               

               
Conread position:
               
103-288
               

               
Cow position:
               
chr29:16195594-16195778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
28, 99
               

               
Conread position:
               
104-228
               

               
Cow position:
               
chr29:28674943-28674814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
104-274
               

               
Cow position:
               
chr29:5062875-5063041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
104-281
               

               
Cow position:
               
chr29:26778627-26778807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
27, 168
               

               
Conread position:
               
104-286
               

               
Cow position:
               
chr29:12784212-12784030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
104-286
               

               
Cow position:
               
chr29:29312772-29312594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
105-255
               

               
Cow position:
               
chr29:44236212-44236363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
105-274
               

               
Cow position:
               
chr29:26334645-26334472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
105-276
               

               
Cow position:
               
chr29:8926715-8926541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
26, 152
               

               
Conread position:
               
105-284
               

               
Cow position:
               
chr29:27009162-27009348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
105-286
               

               
Cow position:
               
chr29:17222152-17222339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
105-286
               

               
Cow position:
               
chr29:22613179-22613352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
105-286
               

               
Cow position:
               
chr29:29769602-29769425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
105-288
               

               
Cow position:
               
chr29:22162509-22162325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
105-288
               

               
Cow position:
               
chr29:35738526-35738338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
26, 177
               

               
Conread position:
               
106-278
               

               
Cow position:
               
chr29:36633089-36632924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
136, 68
               

               
Conread position:
               
106-284
               

               
Cow position:
               
chr29:10838695-10838874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
106-288
               

               
Cow position:
               
chr29:18695002-18695183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 161
               

               
Conread position:
               
107-280
               

               
Cow position:
               
chr29:3502807-3502972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
107-286
               

               
Cow position:
               
chr29:13553878-13554061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
107-286
               

               
Cow position:
               
chr29:17135597-17135772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
108-286
               

               
Cow position:
               
chr29:26289339-26289161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
108-286
               

               
Cow position:
               
chr29:27007865-27008042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 125
               

               
Conread position:
               
108-288
               

               
Cow position:
               
chr29:585029-585205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
110-286
               

               
Cow position:
               
chr29:11562363-11562541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
111-280
               

               
Cow position:
               
chr29:25737667-25737498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
111-284
               

               
Cow position:
               
chr29:6925769-6925936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 5
               

               
Conread position:
               
112-286
               

               
Cow position:
               
chr29:20903537-20903359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
19, 141
               

               
Conread position:
               
112-286
               

               
Cow position:
               
chr29:23984213-23984032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
113-286
               

               
Cow position:
               
chr29:18735891-18735715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 105
               

               
Conread position:
               
114-286
               

               
Cow position:
               
chr29:36183029-36183207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 55
               

               
Conread position:
               
114-286
               

               
Cow position:
               
chr29:44378665-44378489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
116-244
               

               
Cow position:
               
chr29:26263606-26263732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 53
               

               
Conread position:
               
116-281
               

               
Cow position:
               
chr29:13458813-13458980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
116-281
               

               
Cow position:
               
chr29:17409084-17409256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
116-281
               

               
Cow position:
               
chr29:41747195-41747365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 97
               

               
Conread position:
               
117-288
               

               
Cow position:
               
chr29:14615500-14615329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
126, 15
               

               
Conread position:
               
117-288
               

               
Cow position:
               
chr29:36586334-36586506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 133
               

               
Conread position:
               
119-286
               

               
Cow position:
               
chr29:27858549-27858720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
120-286
               

               
Cow position:
               
chr29:25474666-25474846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
121-286
               

               
Cow position:
               
chr29:17668255-17668421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
10, 130
               

               
Conread position:
               
122-286
               

               
Cow position:
               
chr29:13639605-13639444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
122-286
               

               
Cow position:
               
chr29:23697740-23697905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
121, 95
               

               
Conread position:
               
124-286
               

               
Cow position:
               
chr29:3711150-3711316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
118, 89
               

               
Conread position:
               
124-286
               

               
Cow position:
               
chr29:26986705-26986858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
125-257
               

               
Cow position:
               
chr29:16735241-16735105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
125-276
               

               
Cow position:
               
chr29:19949074-19949223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 121
               

               
Conread position:
               
125-276
               

               
Cow position:
               
chr29:24119972-24119816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
125-285
               

               
Cow position:
               
chr29:6286393-6286233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
116, 81
               

               
Conread position:
               
125-286
               

               
Cow position:
               
chr29:4520100-4520261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
125-286
               

               
Cow position:
               
chr29:11704887-11705049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
75, 126
               

               
Conread position:
               
125-286
               

               
Cow position:
               
chr29:22714963-22714798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
125-286
               

               
Cow position:
               
chr29:24103784-24103619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
125-286
               

               
Cow position:
               
chr29:34773963-34773808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
125-288
               

               
Cow position:
               
chr29:24624012-24624178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
76, 115
               

               
Conread position:
               
126-286
               

               
Cow position:
               
chr29:26984993-26985154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
127-286
               

               
Cow position:
               
chr29:19254056-19253894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
128-288
               

               
Cow position:
               
chr29:39642944-39643105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
113, 65
               

               
Conread position:
               
130-276
               

               
Cow position:
               
chr29:43495829-43495970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
130-286
               

               
Cow position:
               
chr29:868542-868701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 86
               

               
Conread position:
               
136-277
               

               
Cow position:
               
chr29:5677560-5677709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
138-276
               

               
Cow position:
               
chr29:2532839-2532981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
138-281
               

               
Cow position:
               
chr29:23155028-23155172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
61, 133
               

               
Conread position:
               
140-276
               

               
Cow position:
               
chr29:463874-463736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
140-288
               

               
Cow position:
               
chr29:5109431-5109276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
143-286
               

               
Cow position:
               
chr29:28446477-28446330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
144-281
               

               
Cow position:
               
chr29:31489103-31489242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
144-286
               

               
Cow position:
               
chr29:36037483-36037628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
145-278
               

               
Cow position:
               
chr29:22778397-22778259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
147-282
               

               
Cow position:
               
chr29:42629952-42630089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
149-284
               

               
Cow position:
               
chr29:6337451-6337585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
92, 63
               

               
Conread position:
               
149-286
               

               
Cow position:
               
chr29:14484757-14484618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
149-286
               

               
Cow position:
               
chr29:35677756-35677621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
96, 61
               

               
Conread position:
               
153-286
               

               
Cow position:
               
chr29:41364902-41365038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
155-277
               

               
Cow position:
               
chr29:36209959-36210078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
155-286
               

               
Cow position:
               
chr29:10818642-10818509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
159-286
               

               
Cow position:
               
chr29:43009286-43009156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 55
               

               
Conread position:
               
160-284
               

               
Cow position:
               
chr29:11433922-11434047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
161-286
               

               
Cow position:
               
chr29:3100461-3100331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
165-286
               

               
Cow position:
               
chr29:28979675-28979555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 52
               

               
Conread position:
               
166-286
               

               
Cow position:
               
chr29:9718967-9718844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 109
               

               
Conread position:
               
167-257
               

               
Cow position:
               
chr29:34430292-34430382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
168-286
               

               
Cow position:
               
chr29:25091917-25092038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 5
               

               
Conread position:
               
169-286
               

               
Cow position:
               
chr29:32211251-32211130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
172-286
               

               
Cow position:
               
chr29:4334539-4334654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
175-286
               

               
Cow position:
               
chr29:28166398-28166287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
187-287
               

               
Cow position:
               
chr29:24252065-24252165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
189-286
               

               
Cow position:
               
chr29:23244051-23243954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-288
               

               
Cow position:
               
chr29:31674467-31674558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.