Cow genome map

Conread name: Pla1-C0000028_H02

Conread position: 1-191
Cow position: chr11:42522595-42522405 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 117, 102

Conread position: 1-252
Cow position: chr11:80792248-80792007 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 196, 62

Conread position: 1-301
Cow position: chr11:52314672-52314388 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 205
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 29, 93

Conread position: 1-323
Cow position: chr11:44252670-44252984 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 222
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 44, 50

Conread position: 1-327
Cow position: chr11:36304330-36304023 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 225
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 35, 15

Conread position: 1-332
Cow position: chr11:4269529-4269204 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 84, 79

Conread position: 1-337
Cow position: chr11:44156377-44156061 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 229
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 121, 102

Conread position: 1-342
Cow position: chr11:30122970-30122638 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 221
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 192, 111

Conread position: 1-389
Cow position: chr11:1495158-1494778 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 259
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 209, 110

Conread position: 1-392
Cow position: chr11:35504333-35503955 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 1-394
Cow position: chr11:29613121-29612736 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 256
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 35, 20

Conread position: 1-394
Cow position: chr11:32685769-32686140 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 269
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 212, 46

Conread position: 1-394
Cow position: chr11:41190284-41190664 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 265
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 223, 58

Conread position: 1-400
Cow position: chr11:21616150-21616529 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 63

Conread position: 1-441
Cow position: chr11:9975021-9974601 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 299
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 360, 74

Conread position: 1-446
Cow position: chr11:26124057-26123616 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 292
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 261, 127

Conread position: 1-447
Cow position: chr11:66729968-66730391 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 286
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 190, 39

Conread position: 1-457
Cow position: chr11:42311568-42311124 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 289
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 150, 0

Conread position: 1-461
Cow position: chr11:10883179-10883614 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 307
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 218, 56

Conread position: 1-486
Cow position: chr11:14147796-14148282 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 124

Conread position: 1-486
Cow position: chr11:38834562-38834094 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 319
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 45, 101

Conread position: 1-487
Cow position: chr11:40775127-40774661 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 312
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 156, 202

Conread position: 1-489
Cow position: chr11:67154561-67155033 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 312
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 141, 71

Conread position: 1-491
Cow position: chr11:4026737-4026255 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 314
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 122, 38

Conread position: 1-491
Cow position: chr11:29667733-29667241 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 319
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 156, 127

Conread position: 1-491
Cow position: chr11:41169821-41169339 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 319
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 343, 106

Conread position: 1-491
Cow position: chr11:43513758-43513268 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 330
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 32, 25

Conread position: 1-491
Cow position: chr11:80473401-80472933 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 310
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 59, 80

Conread position: 1-493
Cow position: chr11:58135269-58135747 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 322
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 32, 25

Conread position: 1-496
Cow position: chr11:21011462-21010978 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 56

Conread position: 1-497
Cow position: chr11:3493861-3494352 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 245

Conread position: 1-497
Cow position: chr11:9156275-9155794 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 335
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 32, 25

Conread position: 1-497
Cow position: chr11:10848323-10848813 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 71

Conread position: 1-497
Cow position: chr11:11989005-11989492 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 247

Conread position: 1-497
Cow position: chr11:17106810-17106319 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 204

Conread position: 1-497
Cow position: chr11:17547035-17547520 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 327
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 194, 204

Conread position: 1-497
Cow position: chr11:19101614-19101131 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 317
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 413, 109

Conread position: 1-497
Cow position: chr11:24394186-24394675 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 323
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 32, 25

Conread position: 1-497
Cow position: chr11:28228893-28228405 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 326
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 192, 170

Conread position: 1-497
Cow position: chr11:30253105-30253588 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 328
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 102, 219

Conread position: 1-497
Cow position: chr11:44517992-44517503 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 245

Conread position: 1-497
Cow position: chr11:53286295-53285810 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 316
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 230, 189

Conread position: 1-497
Cow position: chr11:67845698-67845209 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 204

Conread position: 1-497
Cow position: chr11:73134162-73134665 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 204

Conread position: 1-497
Cow position: chr11:85392953-85392471 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 310
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 397, 98

Conread position: 1-499
Cow position: chr11:15943473-15943014 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 341
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 392, 119

Conread position: 1-499
Cow position: chr11:35264748-35265220 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 337
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 77, 17

Conread position: 1-499
Cow position: chr11:73462269-73461775 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 56

Conread position: 2-260
Cow position: chr11:21898968-21898712 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 169
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 189, 60

Conread position: 2-324
Cow position: chr11:50016133-50015818 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 221
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 91, 204

Conread position: 2-394
Cow position: chr11:50026874-50026486 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 251
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 143, 260

Conread position: 2-442
Cow position: chr11:23880903-23881334 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 288
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 72, 68

Conread position: 2-476
Cow position: chr11:26469542-26469086 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 51

Conread position: 2-497
Cow position: chr11:67451368-67451855 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 24

Conread position: 2-499
Cow position: chr11:37285478-37285956 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 22

Conread position: 3-491
Cow position: chr11:26548400-26548885 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 318
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 154, 107

Conread position: 3-497
Cow position: chr11:19063198-19062714 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 318
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 33, 18

Conread position: 3-497
Cow position: chr11:63654459-63653971 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 72

Conread position: 4-271
Cow position: chr11:5262653-5262402 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 17

Conread position: 4-352
Cow position: chr11:36324270-36324593 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 233
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 22

Conread position: 5-424
Cow position: chr11:54254327-54254733 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 276
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 11

Conread position: 7-342
Cow position: chr11:2727615-2727928 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 224
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 7-497
Cow position: chr11:20733360-20732872 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 198

Conread position: 9-394
Cow position: chr11:21849631-21849267 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 256
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 52, 7

Conread position: 10-448
Cow position: chr11:30278477-30278905 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 301
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 165, 47

Conread position: 11-393
Cow position: chr11:6682735-6683105 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 123

Conread position: 11-397
Cow position: chr11:2882539-2882160 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 261
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 281, 183

Conread position: 18-394
Cow position: chr11:12537270-12537628 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 255
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 61, 39

Conread position: 18-499
Cow position: chr11:42339403-42338944 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 327
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 19, 9

Conread position: 22-491
Cow position: chr11:49039481-49039024 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 306
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 57, 74

Conread position: 25-334
Cow position: chr11:15535365-15535662 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 209
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 277, 22

Conread position: 27-242
Cow position: chr11:21890091-21889882 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 146
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 28-497
Cow position: chr11:44582439-44581980 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 303
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 332, 100

Conread position: 31-450
Cow position: chr11:59038879-59038455 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 275
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 71, 127

Conread position: 44-288
Cow position: chr11:64962620-64962859 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 13

Conread position: 57-394
Cow position: chr11:54484349-54484026 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 221
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 134, 145

Conread position: 58-394
Cow position: chr11:25865906-25865586 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 217
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 314, 37

Conread position: 59-394
Cow position: chr11:76373063-76372746 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 220
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 53, 21

Conread position: 59-493
Cow position: chr11:28740371-28739956 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 293
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 292, 48

Conread position: 80-252
Cow position: chr11:85210766-85210593 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 133, 0

Conread position: 92-494
Cow position: chr11:1489205-1488812 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 255
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 99, 110

Conread position: 105-499
Cow position: chr11:46723512-46723142 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 48

Conread position: 111-499
Cow position: chr11:33189122-33188745 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 258
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 49, 17

Conread position: 116-358
Cow position: chr11:71526854-71527087 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 175
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 45, 136

Conread position: 145-497
Cow position: chr11:21475140-21475483 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 231
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 15, 103

Conread position: 145-499
Cow position: chr11:5908518-5908169 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 244
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 35, 12

Conread position: 146-494
Cow position: chr11:43007109-43007450 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 234
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 17

Conread position: 213-499
Cow position: chr11:57784712-57784427 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 198
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 186, 31

Conread position: 254-499
Cow position: chr11:85210479-85210234 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 136, 162

Show alignments to all cow chromosomes.