Cow genome map
| Conread name: | Pla1-C0000028_H02 |
| Conread position: | 1-226 |
| Cow position: | chr13:6526659-6526881 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-243 |
| Cow position: | chr13:44652877-44652647 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 90 |
| Conread position: | 1-247 |
| Cow position: | chr13:37808173-37807940 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-252 |
| Cow position: | chr13:38646564-38646814 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 62, 28 |
| Conread position: | 1-264 |
| Cow position: | chr13:47229059-47228797 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 62, 75 |
| Conread position: | 1-265 |
| Cow position: | chr13:28290892-28290635 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 56 |
| Conread position: | 1-332 |
| Cow position: | chr13:5625046-5624725 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 1-332 |
| Cow position: | chr13:23002067-23001747 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 1-337 |
| Cow position: | chr13:15923441-15923111 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 1-337 |
| Cow position: | chr13:30239258-30239596 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 133, 110 |
| Conread position: | 1-341 |
| Cow position: | chr13:32546331-32546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 82, 69 |
| Conread position: | 1-353 |
| Cow position: | chr13:44466861-44466507 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 155, 119 |
| Conread position: | 1-459 |
| Cow position: | chr13:3653378-3652922 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 299 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 133, 175 |
| Conread position: | 1-490 |
| Cow position: | chr13:13900809-13901289 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 320 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 1-493 |
| Cow position: | chr13:29517940-29518414 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 52 |
| Conread position: | 1-494 |
| Cow position: | chr13:11738861-11739340 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 1-494 |
| Cow position: | chr13:37835384-37834900 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 312 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 1-494 |
| Cow position: | chr13:49974605-49975092 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 192 |
| Conread position: | 1-497 |
| Cow position: | chr13:4942324-4942815 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 247 |
| Conread position: | 1-497 |
| Cow position: | chr13:13325869-13326355 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 100 |
| Conread position: | 1-497 |
| Cow position: | chr13:14402156-14401678 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 156, 121 |
| Conread position: | 1-497 |
| Cow position: | chr13:15543482-15543970 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 318 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 74, 83 |
| Conread position: | 1-497 |
| Cow position: | chr13:21839253-21838777 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 192, 85 |
| Conread position: | 1-497 |
| Cow position: | chr13:31611369-31610881 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 81 |
| Conread position: | 1-497 |
| Cow position: | chr13:31729954-31729473 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 318 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 411, 247 |
| Conread position: | 1-497 |
| Cow position: | chr13:34041397-34040904 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 249 |
| Conread position: | 1-497 |
| Cow position: | chr13:48358582-48359056 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 309 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 357, 158 |
| Conread position: | 1-497 |
| Cow position: | chr13:50110393-50110883 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 323 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 130, 90 |
| Conread position: | 1-499 |
| Cow position: | chr13:24745301-24744800 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 326 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 2-397 |
| Cow position: | chr13:34019780-34019411 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-474 |
| Cow position: | chr13:12733982-12733524 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 47, 172 |
| Conread position: | 2-494 |
| Cow position: | chr13:6640349-6640815 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 336 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 194, 55 |
| Conread position: | 2-494 |
| Cow position: | chr13:31732947-31732469 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 2-497 |
| Cow position: | chr13:34342847-34343336 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 317 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 413, 78 |
| Conread position: | 2-499 |
| Cow position: | chr13:30276376-30275900 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 98 |
| Conread position: | 3-246 |
| Cow position: | chr13:25885005-25885234 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 6-491 |
| Cow position: | chr13:35758229-35758705 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 315 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 120, 15 |
| Conread position: | 11-199 |
| Cow position: | chr13:47837102-47836918 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 11-259 |
| Cow position: | chr13:48934683-48934932 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 187, 111 |
| Conread position: | 24-198 |
| Cow position: | chr13:47277078-47277245 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 26-499 |
| Cow position: | chr13:11141938-11141483 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 24 |
| Conread position: | 27-498 |
| Cow position: | chr13:50461705-50461223 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 29-303 |
| Cow position: | chr13:30654428-30654159 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 55, 174 |
| Conread position: | 38-497 |
| Cow position: | chr13:5501022-5500569 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 145, 167 |
| Conread position: | 54-337 |
| Cow position: | chr13:25692670-25692941 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 59-499 |
| Cow position: | chr13:36958597-36958171 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 52 |
| Conread position: | 63-459 |
| Cow position: | chr13:21828865-21829233 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 269, 84 |
| Conread position: | 67-499 |
| Cow position: | chr13:46527458-46527883 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 118, 72 |
| Conread position: | 105-494 |
| Cow position: | chr13:42217638-42217255 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 309, 40 |
| Conread position: | 109-499 |
| Cow position: | chr13:34096916-34096536 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 34 |
| Conread position: | 132-467 |
| Cow position: | chr13:19123942-19123631 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 185, 96 |
| Conread position: | 140-348 |
| Cow position: | chr13:61083514-61083713 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 161, 61 |
Show alignments to all cow chromosomes.