Cow genome map
| Conread name: | Pla1-C0000028_H02 |
| Conread position: | 1-212 |
| Cow position: | chr14:12742252-12742043 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 1-216 |
| Cow position: | chr14:20910477-20910687 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 97, 63 |
| Conread position: | 1-221 |
| Cow position: | chr14:10047016-10046811 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-226 |
| Cow position: | chr14:13620325-13620102 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 1-243 |
| Cow position: | chr14:46637367-46637604 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 1-328 |
| Cow position: | chr14:2951744-2951439 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-341 |
| Cow position: | chr14:40341873-40342210 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 190, 51 |
| Conread position: | 1-349 |
| Cow position: | chr14:50139379-50139722 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 40, 102 |
| Conread position: | 1-363 |
| Cow position: | chr14:30705498-30705134 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 1-376 |
| Cow position: | chr14:44255941-44255576 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 1-387 |
| Cow position: | chr14:44775222-44774857 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-393 |
| Cow position: | chr14:50111610-50112004 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 122, 177 |
| Conread position: | 1-394 |
| Cow position: | chr14:38814665-38814292 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 194, 25 |
| Conread position: | 1-404 |
| Cow position: | chr14:17490643-17490243 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 182, 204 |
| Conread position: | 1-445 |
| Cow position: | chr14:16272479-16272043 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 293 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 32, 110 |
| Conread position: | 1-452 |
| Cow position: | chr14:33689025-33689449 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 309 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 371, 75 |
| Conread position: | 1-461 |
| Cow position: | chr14:16918902-16918447 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 302 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 290, 121 |
| Conread position: | 1-461 |
| Cow position: | chr14:17687320-17687765 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 121, 55 |
| Conread position: | 1-491 |
| Cow position: | chr14:5529877-5530357 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 73, 177 |
| Conread position: | 1-493 |
| Cow position: | chr14:18105262-18105723 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 397, 25 |
| Conread position: | 1-494 |
| Cow position: | chr14:45710908-45710437 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 327 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 190, 111 |
| Conread position: | 1-497 |
| Cow position: | chr14:7473168-7473657 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 321 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 1-497 |
| Cow position: | chr14:13303775-13304258 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 323 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 156, 5 |
| Conread position: | 1-497 |
| Cow position: | chr14:13779764-13780257 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 325 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 122, 46 |
| Conread position: | 1-497 |
| Cow position: | chr14:15275034-15274534 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 257 |
| Conread position: | 1-497 |
| Cow position: | chr14:17000242-16999752 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 69 |
| Conread position: | 1-497 |
| Cow position: | chr14:19327446-19326957 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 322 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 105, 100 |
| Conread position: | 1-497 |
| Cow position: | chr14:20783271-20783773 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 258 |
| Conread position: | 1-497 |
| Cow position: | chr14:23256539-23256056 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 317 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 291, 111 |
| Conread position: | 1-497 |
| Cow position: | chr14:29046869-29046367 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 331 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 192, 255 |
| Conread position: | 1-499 |
| Cow position: | chr14:13833967-13834447 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 56 |
| Conread position: | 2-376 |
| Cow position: | chr14:32043954-32044311 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 57, 101 |
| Conread position: | 2-394 |
| Cow position: | chr14:30762062-30761677 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 104, 37 |
| Conread position: | 2-497 |
| Cow position: | chr14:5513754-5514233 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 3-251 |
| Cow position: | chr14:21744918-21745163 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 179, 119 |
| Conread position: | 3-262 |
| Cow position: | chr14:37984402-37984658 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 167, 107 |
| Conread position: | 3-264 |
| Cow position: | chr14:13462337-13462597 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 197, 131 |
| Conread position: | 3-451 |
| Cow position: | chr14:44552670-44553097 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 297 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 3-490 |
| Cow position: | chr14:33798293-33798772 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 3-491 |
| Cow position: | chr14:43559053-43559537 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 154, 162 |
| Conread position: | 3-499 |
| Cow position: | chr14:24522752-24523244 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 54 |
| Conread position: | 4-497 |
| Cow position: | chr14:190863-191350 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 41, 47 |
| Conread position: | 6-252 |
| Cow position: | chr14:45086062-45086306 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 6-454 |
| Cow position: | chr14:21128477-21128917 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 218, 47 |
| Conread position: | 10-243 |
| Cow position: | chr14:12805415-12805171 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 69, 122 |
| Conread position: | 11-345 |
| Cow position: | chr14:48358745-48358420 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 127, 18 |
| Conread position: | 16-493 |
| Cow position: | chr14:10861775-10861327 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 305, 43 |
| Conread position: | 27-371 |
| Cow position: | chr14:31392470-31392142 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 28-416 |
| Cow position: | chr14:14214225-14213860 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 37-490 |
| Cow position: | chr14:45188942-45188511 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 359, 10 |
| Conread position: | 44-332 |
| Cow position: | chr14:10475243-10474966 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 22, 108 |
| Conread position: | 61-337 |
| Cow position: | chr14:17051022-17050759 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 73-499 |
| Cow position: | chr14:32532105-32531704 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 39 |
| Conread position: | 77-497 |
| Cow position: | chr14:45028119-45027697 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 45, 121 |
| Conread position: | 105-490 |
| Cow position: | chr14:18417425-18417800 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 141 |
| Conread position: | 109-452 |
| Cow position: | chr14:44380259-44380605 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 120-337 |
| Cow position: | chr14:30666406-30666619 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 138 |
| Conread position: | 134-499 |
| Cow position: | chr14:38832324-38831953 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 69, 13 |
Show alignments to all cow chromosomes.