Cow genome map
| Conread name: | Pla1-C0000028_H02 |
| Conread position: | 1-184 |
| Cow position: | chr15:12028886-12029069 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 74 |
| Conread position: | 1-200 |
| Cow position: | chr15:5207707-5207904 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 28 |
| Conread position: | 1-235 |
| Cow position: | chr15:21802831-21803062 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 1-250 |
| Cow position: | chr15:4813418-4813663 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 1-252 |
| Cow position: | chr15:3777859-3777613 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 1-337 |
| Cow position: | chr15:7235065-7235397 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 98, 123 |
| Conread position: | 1-342 |
| Cow position: | chr15:50056847-50057173 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 257, 156 |
| Conread position: | 1-350 |
| Cow position: | chr15:1783054-1783398 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 68, 205 |
| Conread position: | 1-370 |
| Cow position: | chr15:6553004-6552641 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 1-397 |
| Cow position: | chr15:7849987-7849613 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 75 |
| Conread position: | 1-446 |
| Cow position: | chr15:4766001-4766442 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 104, 98 |
| Conread position: | 1-446 |
| Cow position: | chr15:29866905-29866468 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 118, 56 |
| Conread position: | 1-457 |
| Cow position: | chr15:1299741-1299285 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 289 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 184, 253 |
| Conread position: | 1-491 |
| Cow position: | chr15:3260503-3260025 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 351, 19 |
| Conread position: | 1-491 |
| Cow position: | chr15:11293617-11293148 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 134, 163 |
| Conread position: | 1-491 |
| Cow position: | chr15:18332010-18331536 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 122, 64 |
| Conread position: | 1-494 |
| Cow position: | chr15:1765121-1765616 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 111, 74 |
| Conread position: | 1-494 |
| Cow position: | chr15:4679076-4679577 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 47 |
| Conread position: | 1-494 |
| Cow position: | chr15:6383355-6382861 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 339 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 176, 263 |
| Conread position: | 1-494 |
| Cow position: | chr15:51675534-51676022 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 1-496 |
| Cow position: | chr15:32493057-32492582 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 321 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 156, 109 |
| Conread position: | 1-497 |
| Cow position: | chr15:3182248-3181764 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 174, 25 |
| Conread position: | 1-497 |
| Cow position: | chr15:4672255-4672736 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 329 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 121, 171 |
| Conread position: | 1-497 |
| Cow position: | chr15:5981167-5981660 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 315 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 190, 98 |
| Conread position: | 1-497 |
| Cow position: | chr15:6079570-6080046 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 320 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 411, 44 |
| Conread position: | 1-497 |
| Cow position: | chr15:6155127-6154623 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 121, 217 |
| Conread position: | 1-497 |
| Cow position: | chr15:19737240-19736754 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 316 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 395, 42 |
| Conread position: | 1-497 |
| Cow position: | chr15:21664925-21664438 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 164 |
| Conread position: | 1-497 |
| Cow position: | chr15:24295903-24296390 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 324 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 134, 172 |
| Conread position: | 1-497 |
| Cow position: | chr15:32712042-32712540 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 1-497 |
| Cow position: | chr15:35752501-35752002 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 146 |
| Conread position: | 1-497 |
| Cow position: | chr15:42530729-42531218 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 325 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 1-497 |
| Cow position: | chr15:53409731-53410209 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 100, 104 |
| Conread position: | 1-498 |
| Cow position: | chr15:45790741-45791207 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 51 |
| Conread position: | 1-499 |
| Cow position: | chr15:5010818-5010326 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 144 |
| Conread position: | 1-499 |
| Cow position: | chr15:18257972-18257505 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 334 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 2-254 |
| Cow position: | chr15:2828235-2828481 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 248, 109 |
| Conread position: | 2-256 |
| Cow position: | chr15:46052502-46052755 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 248, 199 |
| Conread position: | 2-387 |
| Cow position: | chr15:33494440-33494805 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 50, 80 |
| Conread position: | 2-394 |
| Cow position: | chr15:21450501-21450886 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 2-474 |
| Cow position: | chr15:10862969-10862535 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 306 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 2-485 |
| Cow position: | chr15:580249-580710 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 207, 45 |
| Conread position: | 2-493 |
| Cow position: | chr15:21914813-21915301 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 173, 109 |
| Conread position: | 2-497 |
| Cow position: | chr15:4922964-4923447 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 323 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 332, 25 |
| Conread position: | 2-499 |
| Cow position: | chr15:1318256-1318723 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 336 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 44, 71 |
| Conread position: | 3-464 |
| Cow position: | chr15:50123114-50122661 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 200 |
| Conread position: | 3-498 |
| Cow position: | chr15:48284511-48285010 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 54 |
| Conread position: | 4-382 |
| Cow position: | chr15:12021221-12021598 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 6-321 |
| Cow position: | chr15:6459723-6460025 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 53, 125 |
| Conread position: | 6-394 |
| Cow position: | chr15:47772962-47773337 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 221, 86 |
| Conread position: | 6-497 |
| Cow position: | chr15:14581541-14581060 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 309 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 78, 73 |
| Conread position: | 9-356 |
| Cow position: | chr15:35870746-35871084 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 230, 99 |
| Conread position: | 9-493 |
| Cow position: | chr15:25106373-25105900 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 11-393 |
| Cow position: | chr15:41788250-41787893 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 101, 60 |
| Conread position: | 11-499 |
| Cow position: | chr15:12268408-12268899 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 327 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 151, 99 |
| Conread position: | 12-349 |
| Cow position: | chr15:12027000-12027331 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 5 |
| Conread position: | 14-499 |
| Cow position: | chr15:15781925-15782382 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 17-493 |
| Cow position: | chr15:13074838-13075298 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 301 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 93, 173 |
| Conread position: | 20-497 |
| Cow position: | chr15:16287111-16286636 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 211, 37 |
| Conread position: | 28-416 |
| Cow position: | chr15:40386744-40387113 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 117, 28 |
| Conread position: | 42-252 |
| Cow position: | chr15:33725833-33726038 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 55-498 |
| Cow position: | chr15:33642972-33642530 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 40 |
| Conread position: | 57-497 |
| Cow position: | chr15:4726076-4726505 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 100, 115 |
| Conread position: | 57-497 |
| Cow position: | chr15:20411468-20411899 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 289 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 303, 137 |
| Conread position: | 88-397 |
| Cow position: | chr15:22240082-22239788 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 8 |
| Conread position: | 113-497 |
| Cow position: | chr15:51218649-51219027 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 118-343 |
| Cow position: | chr15:3710369-3710596 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 158, 68 |
| Conread position: | 134-494 |
| Cow position: | chr15:32067660-32067309 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 264, 22 |
| Conread position: | 204-498 |
| Cow position: | chr15:29333776-29333497 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 135, 28 |
| Conread position: | 209-499 |
| Cow position: | chr15:48007383-48007663 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 187, 37 |
| Conread position: | 245-499 |
| Cow position: | chr15:21803793-21804044 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 248-476 |
| Cow position: | chr15:9533121-9532891 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 258-498 |
| Cow position: | chr15:46553580-46553343 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 141, 24 |
| Conread position: | 316-499 |
| Cow position: | chr15:33494774-33494956 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 13, 20 |
Show alignments to all cow chromosomes.