Cow genome map
| Conread name: | Pla1-C0000028_H02 |
| Conread position: | 1-143 |
| Cow position: | chr16:42054360-42054503 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 60, 50 |
| Conread position: | 1-288 |
| Cow position: | chr16:54727058-54727327 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-296 |
| Cow position: | chr16:28169879-28169586 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 192, 28 |
| Conread position: | 1-334 |
| Cow position: | chr16:38023797-38024121 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 188, 81 |
| Conread position: | 1-337 |
| Cow position: | chr16:23251963-23251625 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 135, 179 |
| Conread position: | 1-377 |
| Cow position: | chr16:37481945-37481590 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 370, 118 |
| Conread position: | 1-394 |
| Cow position: | chr16:4478496-4478110 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 266 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 1-397 |
| Cow position: | chr16:11781918-11781540 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 1-442 |
| Cow position: | chr16:406566-406132 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 127 |
| Conread position: | 1-464 |
| Cow position: | chr16:14665335-14664886 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 84, 93 |
| Conread position: | 1-478 |
| Cow position: | chr16:40295700-40295221 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 63, 181 |
| Conread position: | 1-479 |
| Cow position: | chr16:49279907-49280379 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 51 |
| Conread position: | 1-481 |
| Cow position: | chr16:36087938-36087476 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 1-491 |
| Cow position: | chr16:2726755-2726260 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 121, 235 |
| Conread position: | 1-491 |
| Cow position: | chr16:12537474-12536997 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 1-491 |
| Cow position: | chr16:23983770-23984254 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 150, 97 |
| Conread position: | 1-491 |
| Cow position: | chr16:25342432-25342926 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 318 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 1-491 |
| Cow position: | chr16:25457003-25456526 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 321 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 359, 15 |
| Conread position: | 1-494 |
| Cow position: | chr16:16897932-16898411 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 210, 15 |
| Conread position: | 1-494 |
| Cow position: | chr16:34530777-34531245 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 319 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 388, 69 |
| Conread position: | 1-496 |
| Cow position: | chr16:15048024-15047519 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 362 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 64, 122 |
| Conread position: | 1-497 |
| Cow position: | chr16:837791-838278 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 69 |
| Conread position: | 1-497 |
| Cow position: | chr16:1566981-1566501 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 122, 192 |
| Conread position: | 1-497 |
| Cow position: | chr16:3330412-3330890 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 326 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 1-497 |
| Cow position: | chr16:8815630-8815147 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 156, 137 |
| Conread position: | 1-497 |
| Cow position: | chr16:15185546-15186040 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 249 |
| Conread position: | 1-497 |
| Cow position: | chr16:23671171-23671661 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 320 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 82, 252 |
| Conread position: | 1-497 |
| Cow position: | chr16:25442102-25442590 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 1-497 |
| Cow position: | chr16:43896800-43896301 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 111, 257 |
| Conread position: | 1-499 |
| Cow position: | chr16:9443316-9442847 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 325 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 60, 51 |
| Conread position: | 1-499 |
| Cow position: | chr16:43648593-43649065 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 327 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 171, 42 |
| Conread position: | 2-131 |
| Cow position: | chr16:52475967-52475838 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-243 |
| Cow position: | chr16:9209438-9209669 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 2-391 |
| Cow position: | chr16:38540467-38540096 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 2-455 |
| Cow position: | chr16:28470599-28470152 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 254 |
| Conread position: | 2-497 |
| Cow position: | chr16:25001824-25001333 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 84 |
| Conread position: | 3-317 |
| Cow position: | chr16:46628401-46628708 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 5-497 |
| Cow position: | chr16:5485209-5485684 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 152, 75 |
| Conread position: | 6-312 |
| Cow position: | chr16:51242618-51242308 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 91, 149 |
| Conread position: | 6-494 |
| Cow position: | chr16:51084631-51085115 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 326 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 7-476 |
| Cow position: | chr16:10568142-10568570 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 118, 75 |
| Conread position: | 8-498 |
| Cow position: | chr16:27786520-27787007 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 319 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 217, 104 |
| Conread position: | 8-499 |
| Cow position: | chr16:33009-33488 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 316 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 185, 197 |
| Conread position: | 10-497 |
| Cow position: | chr16:25086100-25086572 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 147, 102 |
| Conread position: | 10-497 |
| Cow position: | chr16:37504246-37504733 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 49 |
| Conread position: | 16-394 |
| Cow position: | chr16:52562459-52562828 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 257 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 45, 41 |
| Conread position: | 20-234 |
| Cow position: | chr16:42863721-42863517 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 211, 37 |
| Conread position: | 26-394 |
| Cow position: | chr16:7306531-7306909 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 27-496 |
| Cow position: | chr16:40557447-40556985 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 299 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 35, 174 |
| Conread position: | 55-330 |
| Cow position: | chr16:23721132-23720870 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 20, 28 |
| Conread position: | 55-389 |
| Cow position: | chr16:36314026-36314360 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 77 |
| Conread position: | 73-499 |
| Cow position: | chr16:35159921-35160327 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 363, 39 |
| Conread position: | 87-405 |
| Cow position: | chr16:12668229-12667912 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 156, 201 |
| Conread position: | 100-497 |
| Cow position: | chr16:6648324-6648716 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 105-494 |
| Cow position: | chr16:41571969-41572351 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 137 |
| Conread position: | 140-496 |
| Cow position: | chr16:29971171-29971517 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 227, 19 |
| Conread position: | 141-499 |
| Cow position: | chr16:52475363-52475025 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 255, 97 |
| Conread position: | 145-497 |
| Cow position: | chr16:39824539-39824881 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 251, 103 |
| Conread position: | 171-493 |
| Cow position: | chr16:24940206-24940524 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 234, 83 |
| Conread position: | 182-499 |
| Cow position: | chr16:52888492-52888802 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 268-498 |
| Cow position: | chr16:42055271-42055488 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 185, 32 |
| Conread position: | 296-494 |
| Cow position: | chr16:32779189-32778992 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 77, 68 |
Show alignments to all cow chromosomes.