Cow genome map
| Conread name: | Pla1-C0000028_H02 |
| Conread position: | 1-185 |
| Cow position: | chr18:16245925-16245746 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-249 |
| Cow position: | chr18:18842365-18842119 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 1-252 |
| Cow position: | chr18:18495789-18495551 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 1-314 |
| Cow position: | chr18:37754028-37754325 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 280, 158 |
| Conread position: | 1-337 |
| Cow position: | chr18:54170255-54169924 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 182, 203 |
| Conread position: | 1-339 |
| Cow position: | chr18:40479649-40479976 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 120, 172 |
| Conread position: | 1-342 |
| Cow position: | chr18:5656598-5656932 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 61, 49 |
| Conread position: | 1-344 |
| Cow position: | chr18:11273861-11273526 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 1-344 |
| Cow position: | chr18:16079926-16080264 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 67, 246 |
| Conread position: | 1-390 |
| Cow position: | chr18:13139881-13139486 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 89, 256 |
| Conread position: | 1-394 |
| Cow position: | chr18:8101169-8100779 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 1-404 |
| Cow position: | chr18:19405319-19404938 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 397, 58 |
| Conread position: | 1-482 |
| Cow position: | chr18:11927020-11927496 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 1-491 |
| Cow position: | chr18:29865355-29864873 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 134, 109 |
| Conread position: | 1-494 |
| Cow position: | chr18:33142507-33142977 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 60 |
| Conread position: | 1-497 |
| Cow position: | chr18:23798902-23799388 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 320 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 361, 247 |
| Conread position: | 1-497 |
| Cow position: | chr18:51461797-51461307 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 2-240 |
| Cow position: | chr18:32726141-32725905 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 228, 186 |
| Conread position: | 2-247 |
| Cow position: | chr18:42126844-42127078 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 2-337 |
| Cow position: | chr18:52652166-52652495 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 133, 126 |
| Conread position: | 2-392 |
| Cow position: | chr18:25961164-25960782 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 2-495 |
| Cow position: | chr18:54004915-54004439 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 321 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 181, 89 |
| Conread position: | 3-264 |
| Cow position: | chr18:54022873-54022616 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 188, 98 |
| Conread position: | 3-347 |
| Cow position: | chr18:39078574-39078920 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 115, 54 |
| Conread position: | 3-497 |
| Cow position: | chr18:28972630-28972143 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 323 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 154, 119 |
| Conread position: | 3-499 |
| Cow position: | chr18:35313628-35314106 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 187 |
| Conread position: | 4-289 |
| Cow position: | chr18:40081152-40080874 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 194, 43 |
| Conread position: | 4-303 |
| Cow position: | chr18:41211218-41211502 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 208, 22 |
| Conread position: | 7-498 |
| Cow position: | chr18:37351730-37352203 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 321 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 200, 56 |
| Conread position: | 10-497 |
| Cow position: | chr18:27988448-27988929 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 334, 244 |
| Conread position: | 11-414 |
| Cow position: | chr18:12357875-12358261 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 149, 42 |
| Conread position: | 11-498 |
| Cow position: | chr18:20692909-20692430 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 325 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 61, 46 |
| Conread position: | 12-258 |
| Cow position: | chr18:36782412-36782652 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 190, 14 |
| Conread position: | 13-392 |
| Cow position: | chr18:159955-159599 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 196, 33 |
| Conread position: | 27-491 |
| Cow position: | chr18:16089401-16089857 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 302 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 130, 83 |
| Conread position: | 28-391 |
| Cow position: | chr18:29046675-29046320 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 47, 110 |
| Conread position: | 29-491 |
| Cow position: | chr18:36509897-36510354 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 143, 134 |
| Conread position: | 39-499 |
| Cow position: | chr18:17743615-17743187 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 40, 74 |
| Conread position: | 42-499 |
| Cow position: | chr18:45184583-45185024 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 360, 70 |
| Conread position: | 54-373 |
| Cow position: | chr18:18450397-18450091 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 55, 85 |
| Conread position: | 64-404 |
| Cow position: | chr18:15826347-15826676 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 125, 48 |
| Conread position: | 92-485 |
| Cow position: | chr18:43337711-43337332 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 312, 20 |
| Conread position: | 99-494 |
| Cow position: | chr18:33265697-33266095 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 69 |
| Conread position: | 103-498 |
| Cow position: | chr18:19471116-19471515 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 159 |
| Conread position: | 109-382 |
| Cow position: | chr18:50680838-50681105 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 105, 48 |
| Conread position: | 112-476 |
| Cow position: | chr18:42062719-42063070 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 114-499 |
| Cow position: | chr18:51274710-51274335 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 275, 94 |
| Conread position: | 115-494 |
| Cow position: | chr18:19485513-19485883 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 221, 64 |
| Conread position: | 117-498 |
| Cow position: | chr18:14421654-14422020 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 46 |
| Conread position: | 174-494 |
| Cow position: | chr18:37157800-37157485 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 187, 74 |
| Conread position: | 182-494 |
| Cow position: | chr18:17962312-17962009 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 9, 72 |
| Conread position: | 284-468 |
| Cow position: | chr18:15852186-15852369 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 118, 12 |
Show alignments to all cow chromosomes.