Cow genome map
| Conread name: | Pla1-C0000028_H02 |
| Conread position: | 1-252 |
| Cow position: | chr21:27284800-27285050 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 156, 109 |
| Conread position: | 1-446 |
| Cow position: | chr21:5012373-5011941 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 1-494 |
| Cow position: | chr21:28256757-28257240 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 308 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 199, 111 |
| Conread position: | 1-494 |
| Cow position: | chr21:45300930-45300455 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 346 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 369, 88 |
| Conread position: | 1-497 |
| Cow position: | chr21:2512179-2512670 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 121 |
| Conread position: | 1-497 |
| Cow position: | chr21:3780102-3780594 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 249 |
| Conread position: | 1-497 |
| Cow position: | chr21:5018473-5018961 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 134, 69 |
| Conread position: | 1-497 |
| Cow position: | chr21:10568035-10568519 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 127 |
| Conread position: | 1-497 |
| Cow position: | chr21:10851418-10851898 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 413, 26 |
| Conread position: | 1-497 |
| Cow position: | chr21:27069632-27069143 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 79 |
| Conread position: | 1-497 |
| Cow position: | chr21:31514984-31514495 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 109 |
| Conread position: | 1-497 |
| Cow position: | chr21:33253514-33254002 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 319 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 121, 79 |
| Conread position: | 1-497 |
| Cow position: | chr21:47646661-47647153 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 327 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 125, 251 |
| Conread position: | 1-497 |
| Cow position: | chr21:47942279-47942766 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 326 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 46, 50 |
| Conread position: | 1-499 |
| Cow position: | chr21:598952-598471 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 213, 58 |
| Conread position: | 1-499 |
| Cow position: | chr21:3142324-3141867 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 333 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 56, 119 |
| Conread position: | 2-497 |
| Cow position: | chr21:40270339-40269851 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 325 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 89, 27 |
| Conread position: | 3-494 |
| Cow position: | chr21:1075397-1075877 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 221 |
| Conread position: | 3-494 |
| Cow position: | chr21:28985440-28985913 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 172, 73 |
| Conread position: | 3-494 |
| Cow position: | chr21:35774279-35774739 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 325 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 145, 23 |
| Conread position: | 3-497 |
| Cow position: | chr21:30598146-30597649 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 169 |
| Conread position: | 3-497 |
| Cow position: | chr21:37372572-37373047 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 327 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 204, 95 |
| Conread position: | 4-204 |
| Cow position: | chr21:749409-749213 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 4-334 |
| Cow position: | chr21:12863332-12863644 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 4-382 |
| Cow position: | chr21:45115421-45115769 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 4-394 |
| Cow position: | chr21:38091675-38092036 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 367, 41 |
| Conread position: | 6-382 |
| Cow position: | chr21:4046208-4046558 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 204, 47 |
| Conread position: | 6-499 |
| Cow position: | chr21:43805192-43804715 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 334 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 209, 42 |
| Conread position: | 8-498 |
| Cow position: | chr21:4405082-4405538 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 11-252 |
| Cow position: | chr21:17167899-17168133 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 147, 16 |
| Conread position: | 11-413 |
| Cow position: | chr21:2456972-2457369 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 67, 72 |
| Conread position: | 11-497 |
| Cow position: | chr21:32440463-32440924 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 315 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 251, 46 |
| Conread position: | 27-300 |
| Cow position: | chr21:1778954-1779214 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 27-498 |
| Cow position: | chr21:39590202-39590687 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 322 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 28-496 |
| Cow position: | chr21:45491398-45491862 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 42 |
| Conread position: | 54-499 |
| Cow position: | chr21:41404697-41405139 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 196 |
| Conread position: | 56-486 |
| Cow position: | chr21:6625922-6626344 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 279 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 56, 141 |
| Conread position: | 57-497 |
| Cow position: | chr21:4564862-4565281 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 301, 19 |
| Conread position: | 63-476 |
| Cow position: | chr21:46170760-46171169 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 96 |
| Conread position: | 83-491 |
| Cow position: | chr21:2880407-2880011 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 319, 39 |
| Conread position: | 87-481 |
| Cow position: | chr21:405731-405353 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 312, 25 |
| Conread position: | 92-499 |
| Cow position: | chr21:26836607-26837013 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 103-488 |
| Cow position: | chr21:26566826-26566454 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 159, 17 |
| Conread position: | 134-493 |
| Cow position: | chr21:30163608-30163248 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 160-499 |
| Cow position: | chr21:13088773-13089100 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 286, 91 |
| Conread position: | 277-498 |
| Cow position: | chr21:2903198-2903409 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 119, 30 |
Show alignments to all cow chromosomes.