Cow genome map
| Conread name: | Pla1-C0000028_H02 |
| Conread position: | 1-202 |
| Cow position: | chr28:22476526-22476724 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 169, 103 |
| Conread position: | 1-211 |
| Cow position: | chr28:28750189-28750399 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 124, 146 |
| Conread position: | 1-226 |
| Cow position: | chr28:25770113-25770334 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 60, 56 |
| Conread position: | 1-261 |
| Cow position: | chr28:25039800-25039558 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-394 |
| Cow position: | chr28:5112935-5112533 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 121, 261 |
| Conread position: | 1-397 |
| Cow position: | chr28:9241935-9241567 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 109, 22 |
| Conread position: | 1-444 |
| Cow position: | chr28:17666098-17665666 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 333, 109 |
| Conread position: | 1-461 |
| Cow position: | chr28:18146529-18146087 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 230, 22 |
| Conread position: | 1-462 |
| Cow position: | chr28:9179821-9180269 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 296 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 350, 245 |
| Conread position: | 1-491 |
| Cow position: | chr28:783865-784346 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 132, 109 |
| Conread position: | 1-491 |
| Cow position: | chr28:7003205-7003685 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 397, 9 |
| Conread position: | 1-491 |
| Cow position: | chr28:15034915-15034422 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 115, 181 |
| Conread position: | 1-491 |
| Cow position: | chr28:18519243-18518758 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 100 |
| Conread position: | 1-494 |
| Cow position: | chr28:7827194-7827672 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 397, 247 |
| Conread position: | 1-496 |
| Cow position: | chr28:3191047-3190558 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 127 |
| Conread position: | 1-497 |
| Cow position: | chr28:1506075-1506561 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 97 |
| Conread position: | 1-497 |
| Cow position: | chr28:2085667-2086160 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 325 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 117, 100 |
| Conread position: | 1-497 |
| Cow position: | chr28:5938692-5939183 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 317 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 345, 247 |
| Conread position: | 1-497 |
| Cow position: | chr28:6778733-6778246 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 320 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 206, 189 |
| Conread position: | 1-497 |
| Cow position: | chr28:7741650-7742128 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 156, 171 |
| Conread position: | 1-497 |
| Cow position: | chr28:12409027-12408532 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 316 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 121, 25 |
| Conread position: | 1-497 |
| Cow position: | chr28:24668818-24669292 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 306 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 415, 50 |
| Conread position: | 1-497 |
| Cow position: | chr28:32791173-32790704 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 323 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 1-497 |
| Cow position: | chr28:33253514-33254009 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 164 |
| Conread position: | 2-244 |
| Cow position: | chr28:12423400-12423162 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 2-376 |
| Cow position: | chr28:7707484-7707108 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 112, 272 |
| Conread position: | 2-491 |
| Cow position: | chr28:22259942-22259465 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 311 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 396, 108 |
| Conread position: | 2-497 |
| Cow position: | chr28:14704178-14703688 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 158 |
| Conread position: | 2-499 |
| Cow position: | chr28:591727-591261 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 397, 74 |
| Conread position: | 3-491 |
| Cow position: | chr28:27958490-27958033 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 4-397 |
| Cow position: | chr28:12179875-12179500 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 53 |
| Conread position: | 6-405 |
| Cow position: | chr28:26451162-26451538 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 203, 45 |
| Conread position: | 14-373 |
| Cow position: | chr28:9337305-9336962 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 193, 120 |
| Conread position: | 18-493 |
| Cow position: | chr28:29539893-29539440 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 155, 92 |
| Conread position: | 27-332 |
| Cow position: | chr28:2117212-2117506 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 103 |
| Conread position: | 27-386 |
| Cow position: | chr28:32269920-32270263 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 30-494 |
| Cow position: | chr28:2365154-2364720 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 422, 13 |
| Conread position: | 31-394 |
| Cow position: | chr28:25713548-25713201 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 32-497 |
| Cow position: | chr28:10580642-10580177 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 144, 90 |
| Conread position: | 43-265 |
| Cow position: | chr28:22479085-22479304 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 180, 27 |
| Conread position: | 55-356 |
| Cow position: | chr28:28228003-28228294 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 55 |
| Conread position: | 63-499 |
| Cow position: | chr28:20896543-20896116 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 286 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 80, 8 |
| Conread position: | 84-494 |
| Cow position: | chr28:10615700-10615311 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 274, 40 |
| Conread position: | 86-497 |
| Cow position: | chr28:34595522-34595927 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 112-497 |
| Cow position: | chr28:8380353-8380732 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 245, 90 |
| Conread position: | 134-498 |
| Cow position: | chr28:919202-918848 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 158-497 |
| Cow position: | chr28:27679506-27679833 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 197-466 |
| Cow position: | chr28:33384496-33384238 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 207, 57 |
| Conread position: | 295-481 |
| Cow position: | chr28:29569173-29569357 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 101, 76 |
Show alignments to all cow chromosomes.