Cow genome map
| Conread name: | Pla1-C0000028_H02 |
| Conread position: | 1-216 |
| Cow position: | chr29:36998212-36998004 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 122, 140 |
| Conread position: | 1-260 |
| Cow position: | chr29:3699128-3699376 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-311 |
| Cow position: | chr29:10822809-10822487 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 134, 49 |
| Conread position: | 1-321 |
| Cow position: | chr29:21518189-21517883 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 117, 25 |
| Conread position: | 1-336 |
| Cow position: | chr29:21425843-21425523 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 1-337 |
| Cow position: | chr29:10647076-10646755 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1-353 |
| Cow position: | chr29:251920-252249 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 1-491 |
| Cow position: | chr29:5236190-5236674 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 46 |
| Conread position: | 1-491 |
| Cow position: | chr29:6264827-6264347 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 79 |
| Conread position: | 1-491 |
| Cow position: | chr29:26163663-26163180 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 109 |
| Conread position: | 1-491 |
| Cow position: | chr29:45460915-45461399 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 130, 189 |
| Conread position: | 1-494 |
| Cow position: | chr29:13583252-13583737 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 1-497 |
| Cow position: | chr29:2840172-2839684 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 359, 131 |
| Conread position: | 1-497 |
| Cow position: | chr29:14587091-14587578 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 321 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 330, 109 |
| Conread position: | 1-497 |
| Cow position: | chr29:15997481-15996993 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 325 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 95, 79 |
| Conread position: | 1-497 |
| Cow position: | chr29:16345380-16345871 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 144 |
| Conread position: | 1-497 |
| Cow position: | chr29:25931357-25930862 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 1-497 |
| Cow position: | chr29:34798636-34798152 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 343, 79 |
| Conread position: | 1-497 |
| Cow position: | chr29:39078534-39078052 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 315 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 359, 109 |
| Conread position: | 1-497 |
| Cow position: | chr29:45205672-45206189 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 328 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 122, 179 |
| Conread position: | 1-498 |
| Cow position: | chr29:27332446-27331974 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 213, 93 |
| Conread position: | 1-499 |
| Cow position: | chr29:19654800-19655279 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 321 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 329, 109 |
| Conread position: | 1-499 |
| Cow position: | chr29:26461069-26460599 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 321 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 342, 109 |
| Conread position: | 3-243 |
| Cow position: | chr29:10849927-10850159 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 197, 67 |
| Conread position: | 3-394 |
| Cow position: | chr29:34525416-34525776 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 83, 11 |
| Conread position: | 3-497 |
| Cow position: | chr29:23977298-23977782 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 327 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 44, 118 |
| Conread position: | 4-393 |
| Cow position: | chr29:16166425-16166052 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 6-349 |
| Cow position: | chr29:42092938-42093275 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 240, 0 |
| Conread position: | 11-373 |
| Cow position: | chr29:33140170-33140535 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 11-385 |
| Cow position: | chr29:18397396-18397750 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 12-493 |
| Cow position: | chr29:24335817-24335347 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 203, 144 |
| Conread position: | 16-392 |
| Cow position: | chr29:34551552-34551918 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 13 |
| Conread position: | 20-334 |
| Cow position: | chr29:3653041-3652735 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 50, 107 |
| Conread position: | 24-499 |
| Cow position: | chr29:19602070-19601623 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 236, 128 |
| Conread position: | 28-308 |
| Cow position: | chr29:26699181-26698899 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 123 |
| Conread position: | 29-497 |
| Cow position: | chr29:2101035-2101498 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 302, 219 |
| Conread position: | 34-494 |
| Cow position: | chr29:19953832-19954276 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 196, 156 |
| Conread position: | 57-378 |
| Cow position: | chr29:12793458-12793763 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 297, 100 |
| Conread position: | 58-497 |
| Cow position: | chr29:16023789-16024222 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 99, 114 |
| Conread position: | 80-490 |
| Cow position: | chr29:16730662-16730255 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 171 |
| Conread position: | 99-499 |
| Cow position: | chr29:36596809-36596413 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 43 |
| Conread position: | 111-491 |
| Cow position: | chr29:409970-409606 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 233, 136 |
| Conread position: | 116-494 |
| Cow position: | chr29:11599611-11599969 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 227, 17 |
| Conread position: | 140-474 |
| Cow position: | chr29:14098052-14098380 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 74, 96 |
| Conread position: | 146-492 |
| Cow position: | chr29:9877194-9876854 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 153, 43 |
| Conread position: | 208-468 |
| Cow position: | chr29:38713045-38713295 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 188, 43 |
| Conread position: | 281-499 |
| Cow position: | chr29:34585726-34585943 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 123, 54 |
Show alignments to all cow chromosomes.