Cow genome map

Conread name: Pla1-C0000028_H02

Conread position: 1-242
Cow position: chr3:35964070-35964311 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 156
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-243
Cow position: chr3:63255226-63255467 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 162
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 97, 55

Conread position: 1-245
Cow position: chr3:81532717-81532961 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 1-252
Cow position: chr3:24193183-24192943 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 170
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 1-252
Cow position: chr3:60081836-60081590 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 62, 23

Conread position: 1-260
Cow position: chr3:79315015-79315264 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 178
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 1-261
Cow position: chr3:71230642-71230389 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 173
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 239, 56

Conread position: 1-264
Cow position: chr3:48229388-48229127 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 172
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 194, 78

Conread position: 1-301
Cow position: chr3:33634188-33634487 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 203
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 190, 47

Conread position: 1-332
Cow position: chr3:46017130-46017459 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 222
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 149, 78

Conread position: 1-337
Cow position: chr3:59862465-59862785 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 224
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 121, 153

Conread position: 1-368
Cow position: chr3:64849088-64848739 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 244
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 228, 0

Conread position: 1-377
Cow position: chr3:68302536-68302181 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 262
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 35, 25

Conread position: 1-379
Cow position: chr3:28676406-28676763 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 264
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 213, 47

Conread position: 1-391
Cow position: chr3:45386944-45387332 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 91

Conread position: 1-393
Cow position: chr3:10240747-10241123 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 261
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 343, 145

Conread position: 1-394
Cow position: chr3:6495571-6495959 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 274
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 98, 22

Conread position: 1-394
Cow position: chr3:38867402-38867788 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 261
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 156, 127

Conread position: 1-394
Cow position: chr3:48843338-48843727 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 255
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 209, 195

Conread position: 1-394
Cow position: chr3:72631149-72631533 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 257
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 134, 246

Conread position: 1-397
Cow position: chr3:35192637-35193009 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 251
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 64, 99

Conread position: 1-452
Cow position: chr3:50916427-50916875 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 291
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 120, 183

Conread position: 1-486
Cow position: chr3:74058615-74059090 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 99

Conread position: 1-491
Cow position: chr3:37970130-37970615 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 204

Conread position: 1-491
Cow position: chr3:48058277-48057792 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 247

Conread position: 1-491
Cow position: chr3:56146400-56146873 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 325
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 44, 51

Conread position: 1-494
Cow position: chr3:30617836-30617352 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 333
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 31, 25

Conread position: 1-494
Cow position: chr3:64027051-64026566 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 204

Conread position: 1-494
Cow position: chr3:71687167-71687650 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 331
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 189

Conread position: 1-497
Cow position: chr3:595221-595701 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 310
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 447, 186

Conread position: 1-497
Cow position: chr3:5884619-5885103 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 320
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 14, 51

Conread position: 1-497
Cow position: chr3:5994001-5993513 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 323
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 116, 176

Conread position: 1-497
Cow position: chr3:6783452-6783943 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 148

Conread position: 1-497
Cow position: chr3:7478835-7478340 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 146

Conread position: 1-497
Cow position: chr3:18812585-18813073 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 48

Conread position: 1-497
Cow position: chr3:18860501-18860992 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 319
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 67, 76

Conread position: 1-497
Cow position: chr3:19800088-19799604 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 318
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 192, 204

Conread position: 1-497
Cow position: chr3:19879730-19880219 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 320
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 192, 121

Conread position: 1-497
Cow position: chr3:20382112-20382611 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 204

Conread position: 1-497
Cow position: chr3:23289246-23288760 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 326
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 133, 31

Conread position: 1-497
Cow position: chr3:34029841-34029346 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 314
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 120, 252

Conread position: 1-497
Cow position: chr3:36877572-36877086 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 330
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 115, 251

Conread position: 1-497
Cow position: chr3:40824477-40824966 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 142

Conread position: 1-497
Cow position: chr3:47080326-47079835 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 121

Conread position: 1-497
Cow position: chr3:49136485-49135991 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 325
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 122, 251

Conread position: 1-497
Cow position: chr3:53516688-53517184 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 314
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 73, 68

Conread position: 1-497
Cow position: chr3:57483643-57483151 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 251

Conread position: 1-497
Cow position: chr3:66621267-66621771 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 319
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 199, 121

Conread position: 1-498
Cow position: chr3:4667187-4667670 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 312
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 89, 25

Conread position: 1-498
Cow position: chr3:41209518-41209026 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 204

Conread position: 1-499
Cow position: chr3:82638190-82638666 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 56

Conread position: 2-260
Cow position: chr3:72783861-72783594 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 61, 14

Conread position: 2-379
Cow position: chr3:82933875-82934236 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 258
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 55, 0

Conread position: 2-462
Cow position: chr3:64823189-64823643 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 300
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 168, 173

Conread position: 2-493
Cow position: chr3:51939014-51938533 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 322
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 43, 67

Conread position: 2-494
Cow position: chr3:29579713-29580181 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 320
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 103, 77

Conread position: 2-497
Cow position: chr3:27919512-27920002 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 315
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 122, 182

Conread position: 3-263
Cow position: chr3:27979960-27980229 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 9, 118

Conread position: 3-309
Cow position: chr3:74226327-74226030 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 203
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 243, 54

Conread position: 3-396
Cow position: chr3:83946034-83946424 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 3-397
Cow position: chr3:21650064-21650435 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 284
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 154, 45

Conread position: 3-401
Cow position: chr3:46922662-46922287 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 270
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 0

Conread position: 3-497
Cow position: chr3:31416106-31416591 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 322
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 190, 202

Conread position: 3-499
Cow position: chr3:19832830-19832336 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 54

Conread position: 4-499
Cow position: chr3:10095512-10095971 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 48

Conread position: 5-394
Cow position: chr3:25783544-25783166 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 269
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 179, 54

Conread position: 6-318
Cow position: chr3:27691772-27692058 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 40

Conread position: 6-494
Cow position: chr3:56100593-56100118 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 316
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 81, 134

Conread position: 8-221
Cow position: chr3:41039589-41039796 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 175, 75

Conread position: 8-497
Cow position: chr3:2918558-2919039 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 242

Conread position: 9-196
Cow position: chr3:79318791-79318975 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 15, 7

Conread position: 9-452
Cow position: chr3:35476220-35475794 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 283
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 26, 15

Conread position: 10-212
Cow position: chr3:15181450-15181651 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 181, 16

Conread position: 11-260
Cow position: chr3:2214648-2214889 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 43, 35

Conread position: 11-388
Cow position: chr3:68358230-68357877 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 254
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 69, 99

Conread position: 11-393
Cow position: chr3:79117250-79117613 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 21, 12

Conread position: 11-497
Cow position: chr3:52653549-52653088 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 317
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 382, 59

Conread position: 11-499
Cow position: chr3:60263924-60263443 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 46

Conread position: 16-499
Cow position: chr3:23066369-23065912 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 323
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 89, 116

Conread position: 26-341
Cow position: chr3:57979506-57979219 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 10, 55

Conread position: 28-493
Cow position: chr3:63002433-63001991 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 301
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 73, 63

Conread position: 30-393
Cow position: chr3:7313354-7313002 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 245
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 64, 111

Conread position: 32-382
Cow position: chr3:12760095-12760433 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 240
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 279, 164

Conread position: 34-394
Cow position: chr3:29338785-29338433 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 23

Conread position: 42-394
Cow position: chr3:24588332-24588000 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 234
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 115, 38

Conread position: 62-462
Cow position: chr3:62317870-62317483 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 257
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 78, 11

Conread position: 66-499
Cow position: chr3:33706761-33706357 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 79

Conread position: 82-497
Cow position: chr3:23206705-23206299 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 259
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 102, 56

Conread position: 89-499
Cow position: chr3:56910962-56911382 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 269
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 135

Conread position: 101-394
Cow position: chr3:37626165-37626467 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 57, 168

Conread position: 101-494
Cow position: chr3:19720470-19720088 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 264
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 277, 8

Conread position: 103-491
Cow position: chr3:8239885-8240260 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 260
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 295, 60

Conread position: 107-397
Cow position: chr3:64888558-64888826 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 94, 0

Conread position: 119-499
Cow position: chr3:76380856-76380489 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 38

Conread position: 127-493
Cow position: chr3:79122389-79122037 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 250
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 23, 82

Conread position: 140-496
Cow position: chr3:57537734-57538084 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 224
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 67, 5

Conread position: 145-452
Cow position: chr3:57658529-57658822 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 254, 22

Conread position: 164-393
Cow position: chr3:84900940-84900717 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 50, 88

Conread position: 164-492
Cow position: chr3:43481043-43481365 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 172, 36

Conread position: 197-397
Cow position: chr3:71146113-71145917 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 17, 49

Conread position: 212-490
Cow position: chr3:62503420-62503694 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 188
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 97, 42

Show alignments to all cow chromosomes.