Cow genome map
| Conread name: | Pla1-C0000028_H02 |
| Conread position: | 1-155 |
| Cow position: | chr4:7783706-7783859 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 1-329 |
| Cow position: | chr4:19005416-19005103 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 290, 55 |
| Conread position: | 1-334 |
| Cow position: | chr4:69521430-69521738 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-378 |
| Cow position: | chr4:37546-37176 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 1-484 |
| Cow position: | chr4:17925073-17924596 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 74 |
| Conread position: | 1-491 |
| Cow position: | chr4:6567279-6567751 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 192, 66 |
| Conread position: | 1-491 |
| Cow position: | chr4:16639505-16639982 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 321 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 359, 126 |
| Conread position: | 1-493 |
| Cow position: | chr4:32393162-32393645 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 155 |
| Conread position: | 1-494 |
| Cow position: | chr4:99323-98843 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 325 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 192, 94 |
| Conread position: | 1-494 |
| Cow position: | chr4:530297-530793 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 328 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 192, 110 |
| Conread position: | 1-494 |
| Cow position: | chr4:1929748-1929267 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 204 |
| Conread position: | 1-494 |
| Cow position: | chr4:5443939-5443450 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 205 |
| Conread position: | 1-494 |
| Cow position: | chr4:41959788-41960274 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 156 |
| Conread position: | 1-495 |
| Cow position: | chr4:43881997-43882481 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 322 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 1-497 |
| Cow position: | chr4:160055-160535 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 1-497 |
| Cow position: | chr4:356801-357283 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 156, 97 |
| Conread position: | 1-497 |
| Cow position: | chr4:3126697-3127189 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 245 |
| Conread position: | 1-497 |
| Cow position: | chr4:10882444-10882926 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 318 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 156, 25 |
| Conread position: | 1-497 |
| Cow position: | chr4:13494223-13494710 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 325 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 171, 109 |
| Conread position: | 1-497 |
| Cow position: | chr4:14755773-14755293 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 324 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 1-497 |
| Cow position: | chr4:18423630-18423143 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 190 |
| Conread position: | 1-497 |
| Cow position: | chr4:25598604-25598107 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 328 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 29, 177 |
| Conread position: | 1-497 |
| Cow position: | chr4:50975522-50975983 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 113, 39 |
| Conread position: | 1-497 |
| Cow position: | chr4:57984880-57985369 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 317 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 156, 49 |
| Conread position: | 1-497 |
| Cow position: | chr4:67682086-67682575 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 315 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 10, 110 |
| Conread position: | 1-499 |
| Cow position: | chr4:4416952-4417432 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 106 |
| Conread position: | 1-499 |
| Cow position: | chr4:6615230-6614745 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 156 |
| Conread position: | 1-499 |
| Cow position: | chr4:12240325-12239844 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 324 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 343, 69 |
| Conread position: | 1-499 |
| Cow position: | chr4:14199072-14199549 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 23 |
| Conread position: | 2-177 |
| Cow position: | chr4:67683736-67683564 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 2-394 |
| Cow position: | chr4:50981374-50981763 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 2-485 |
| Cow position: | chr4:5925949-5925485 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 2-491 |
| Cow position: | chr4:36897268-36897748 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 170 |
| Conread position: | 2-491 |
| Cow position: | chr4:45407867-45408340 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 12 |
| Conread position: | 3-181 |
| Cow position: | chr4:69462630-69462452 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 3-252 |
| Cow position: | chr4:67351453-67351711 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 3-349 |
| Cow position: | chr4:14514036-14513702 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 3-370 |
| Cow position: | chr4:28064019-28064378 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 54 |
| Conread position: | 3-371 |
| Cow position: | chr4:66101635-66101282 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 7 |
| Conread position: | 3-394 |
| Cow position: | chr4:13125907-13125533 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 115, 54 |
| Conread position: | 3-446 |
| Cow position: | chr4:31564409-31563957 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 107, 260 |
| Conread position: | 3-474 |
| Cow position: | chr4:12609506-12609971 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 3-494 |
| Cow position: | chr4:182736-183224 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 250 |
| Conread position: | 3-497 |
| Cow position: | chr4:12588226-12588705 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 310 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 393, 107 |
| Conread position: | 3-497 |
| Cow position: | chr4:32213059-32213550 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 314 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 387, 187 |
| Conread position: | 3-499 |
| Cow position: | chr4:47462711-47463199 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 320 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 88, 61 |
| Conread position: | 5-497 |
| Cow position: | chr4:42405504-42405993 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 152, 162 |
| Conread position: | 6-192 |
| Cow position: | chr4:64985210-64985397 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 178, 53 |
| Conread position: | 6-488 |
| Cow position: | chr4:18337750-18338223 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 305 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 406, 74 |
| Conread position: | 6-497 |
| Cow position: | chr4:34178338-34177871 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 96 |
| Conread position: | 7-394 |
| Cow position: | chr4:4178155-4178521 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 332, 73 |
| Conread position: | 7-424 |
| Cow position: | chr4:27974456-27974851 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 12 |
| Conread position: | 9-497 |
| Cow position: | chr4:26628065-26627557 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 337 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 9-499 |
| Cow position: | chr4:5881057-5881535 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 314 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 122, 211 |
| Conread position: | 13-394 |
| Cow position: | chr4:41108241-41107900 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 16-497 |
| Cow position: | chr4:50806427-50806872 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 389, 10 |
| Conread position: | 18-286 |
| Cow position: | chr4:31756556-31756814 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 177, 39 |
| Conread position: | 20-493 |
| Cow position: | chr4:23356822-23356374 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 78, 88 |
| Conread position: | 26-452 |
| Cow position: | chr4:51826063-51825656 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 27-465 |
| Cow position: | chr4:66637599-66637168 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 230 |
| Conread position: | 28-351 |
| Cow position: | chr4:49702669-49702990 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 125 |
| Conread position: | 40-344 |
| Cow position: | chr4:13321522-13321236 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 88, 17 |
| Conread position: | 50-356 |
| Cow position: | chr4:42926100-42925802 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 266, 204 |
| Conread position: | 54-485 |
| Cow position: | chr4:47486258-47486678 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 285 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 294, 78 |
| Conread position: | 57-497 |
| Cow position: | chr4:33494494-33494933 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 66, 156 |
| Conread position: | 80-377 |
| Cow position: | chr4:1404180-1403882 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 140, 72 |
| Conread position: | 94-487 |
| Cow position: | chr4:67717277-67717666 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 49, 105 |
| Conread position: | 118-492 |
| Cow position: | chr4:1952565-1952194 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 8, 91 |
| Conread position: | 140-394 |
| Cow position: | chr4:39931973-39932219 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 178, 62 |
| Conread position: | 140-462 |
| Cow position: | chr4:33322847-33322528 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 27, 104 |
| Conread position: | 143-494 |
| Cow position: | chr4:47701463-47701813 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 108 |
| Conread position: | 148-499 |
| Cow position: | chr4:67651258-67650904 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 174-497 |
| Cow position: | chr4:3356873-3356555 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 186, 80 |
| Conread position: | 250-499 |
| Cow position: | chr4:44644624-44644374 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 163, 195 |
| Conread position: | 252-392 |
| Cow position: | chr4:33173665-33173800 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 258-499 |
| Cow position: | chr4:54194441-54194675 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 150, 33 |
| Conread position: | 289-495 |
| Cow position: | chr4:67351955-67352150 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 11 |
Show alignments to all cow chromosomes.