Cow genome map
| Conread name: | Pla1-C0000028_H02 |
| Conread position: | 1-199 |
| Cow position: | chr5:29670148-29670343 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 117, 51 |
| Conread position: | 1-332 |
| Cow position: | chr5:12642754-12642430 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 105, 100 |
| Conread position: | 1-332 |
| Cow position: | chr5:62361670-62361982 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-335 |
| Cow position: | chr5:60716624-60716301 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-336 |
| Cow position: | chr5:7143056-7142746 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 156, 36 |
| Conread position: | 1-339 |
| Cow position: | chr5:72686342-72686029 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 79, 84 |
| Conread position: | 1-344 |
| Cow position: | chr5:20403713-20404039 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 1-351 |
| Cow position: | chr5:23669138-23668803 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 233, 57 |
| Conread position: | 1-351 |
| Cow position: | chr5:46645930-46646287 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 1-389 |
| Cow position: | chr5:4386231-4386610 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 359, 65 |
| Conread position: | 1-394 |
| Cow position: | chr5:30580330-30580721 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 122, 26 |
| Conread position: | 1-446 |
| Cow position: | chr5:4018204-4017769 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 130, 68 |
| Conread position: | 1-446 |
| Cow position: | chr5:27908278-27907842 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 288 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 182, 134 |
| Conread position: | 1-461 |
| Cow position: | chr5:49519551-49519992 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 359, 109 |
| Conread position: | 1-491 |
| Cow position: | chr5:5104213-5104690 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 411, 156 |
| Conread position: | 1-491 |
| Cow position: | chr5:37733337-37733824 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 315 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 35, 123 |
| Conread position: | 1-494 |
| Cow position: | chr5:10775278-10774785 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 123, 13 |
| Conread position: | 1-494 |
| Cow position: | chr5:41527805-41527318 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 142, 188 |
| Conread position: | 1-494 |
| Cow position: | chr5:47830087-47829599 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 204 |
| Conread position: | 1-496 |
| Cow position: | chr5:59283307-59283796 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 359, 121 |
| Conread position: | 1-497 |
| Cow position: | chr5:3503118-3502626 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 320 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 1-497 |
| Cow position: | chr5:3965437-3965934 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 25 |
| Conread position: | 1-497 |
| Cow position: | chr5:10813760-10813269 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 245 |
| Conread position: | 1-497 |
| Cow position: | chr5:12731719-12731234 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 1-497 |
| Cow position: | chr5:18560415-18559924 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 324 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 117, 65 |
| Conread position: | 1-497 |
| Cow position: | chr5:31707553-31708044 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 72 |
| Conread position: | 1-497 |
| Cow position: | chr5:34287231-34286752 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 48 |
| Conread position: | 1-497 |
| Cow position: | chr5:59061627-59062117 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 22 |
| Conread position: | 1-497 |
| Cow position: | chr5:64781025-64780533 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 1-498 |
| Cow position: | chr5:49156255-49155783 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 340 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 39, 25 |
| Conread position: | 2-378 |
| Cow position: | chr5:56331148-56330789 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 71 |
| Conread position: | 2-394 |
| Cow position: | chr5:34697593-34697974 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 363, 126 |
| Conread position: | 2-394 |
| Cow position: | chr5:54791641-54791256 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 2-494 |
| Cow position: | chr5:25636830-25637302 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 64 |
| Conread position: | 2-494 |
| Cow position: | chr5:26980459-26980905 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 335 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 407, 24 |
| Conread position: | 2-497 |
| Cow position: | chr5:6153911-6153417 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 322 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 120, 249 |
| Conread position: | 2-497 |
| Cow position: | chr5:18121491-18121001 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 188 |
| Conread position: | 2-497 |
| Cow position: | chr5:48807747-48807252 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 323 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 120, 170 |
| Conread position: | 3-252 |
| Cow position: | chr5:74736811-74737055 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 109, 43 |
| Conread position: | 3-333 |
| Cow position: | chr5:21145289-21144976 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 96, 109 |
| Conread position: | 3-337 |
| Cow position: | chr5:48544440-48544772 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 247, 198 |
| Conread position: | 3-389 |
| Cow position: | chr5:70950991-70950621 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 172, 109 |
| Conread position: | 3-397 |
| Cow position: | chr5:62413967-62414351 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 196 |
| Conread position: | 3-494 |
| Cow position: | chr5:5305583-5306036 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 36 |
| Conread position: | 3-499 |
| Cow position: | chr5:73974889-73974418 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 320 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 204, 23 |
| Conread position: | 4-176 |
| Cow position: | chr5:43423251-43423080 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 4-499 |
| Cow position: | chr5:21116745-21117237 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 67 |
| Conread position: | 6-141 |
| Cow position: | chr5:63319269-63319135 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 7-391 |
| Cow position: | chr5:59077375-59077762 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 263 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 170, 132 |
| Conread position: | 11-499 |
| Cow position: | chr5:62771966-62771490 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 160 |
| Conread position: | 13-391 |
| Cow position: | chr5:64794572-64794935 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 183, 44 |
| Conread position: | 16-488 |
| Cow position: | chr5:34952896-34953331 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 228, 50 |
| Conread position: | 16-497 |
| Cow position: | chr5:4070225-4070697 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 31-462 |
| Cow position: | chr5:30051709-30051298 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 78 |
| Conread position: | 34-499 |
| Cow position: | chr5:51313104-51312637 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 57-260 |
| Cow position: | chr5:41554285-41554085 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 193, 121 |
| Conread position: | 103-497 |
| Cow position: | chr5:24295710-24296092 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 259, 83 |
| Conread position: | 104-491 |
| Cow position: | chr5:69622682-69623065 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 235, 41 |
| Conread position: | 108-499 |
| Cow position: | chr5:74027233-74026847 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 153, 65 |
| Conread position: | 128-497 |
| Cow position: | chr5:10919957-10920316 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 216, 108 |
| Conread position: | 140-498 |
| Cow position: | chr5:18887426-18887072 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 148-498 |
| Cow position: | chr5:76053398-76053067 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 49 |
Show alignments to all cow chromosomes.