Cow genome map
| Conread name: | Pla1-C0000028_H02 |
| Conread position: | 1-168 |
| Cow position: | chr6:54415502-54415671 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-195 |
| Cow position: | chr6:13310226-13310031 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 1-228 |
| Cow position: | chr6:69391390-69391168 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 122, 90 |
| Conread position: | 1-252 |
| Cow position: | chr6:46573908-46574159 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-265 |
| Cow position: | chr6:13105191-13105453 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 192, 204 |
| Conread position: | 1-319 |
| Cow position: | chr6:3784898-3785210 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 245, 0 |
| Conread position: | 1-352 |
| Cow position: | chr6:64717153-64717494 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 247, 0 |
| Conread position: | 1-391 |
| Cow position: | chr6:60375438-60375064 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 120, 86 |
| Conread position: | 1-461 |
| Cow position: | chr6:5948652-5948198 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 303 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 359, 261 |
| Conread position: | 1-490 |
| Cow position: | chr6:52694152-52694638 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 1-491 |
| Cow position: | chr6:50475-49993 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 318 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 156, 137 |
| Conread position: | 1-491 |
| Cow position: | chr6:8760164-8759685 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 319 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 333, 79 |
| Conread position: | 1-491 |
| Cow position: | chr6:34890992-34890514 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 444, 129 |
| Conread position: | 1-491 |
| Cow position: | chr6:40866193-40865713 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 313 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 134, 127 |
| Conread position: | 1-493 |
| Cow position: | chr6:33108326-33107840 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 110 |
| Conread position: | 1-494 |
| Cow position: | chr6:7140212-7139725 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 147, 205 |
| Conread position: | 1-494 |
| Cow position: | chr6:39954996-39955462 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 171, 45 |
| Conread position: | 1-494 |
| Cow position: | chr6:43618852-43619339 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 327 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 1-496 |
| Cow position: | chr6:40553443-40552963 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 316 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 156, 64 |
| Conread position: | 1-497 |
| Cow position: | chr6:1821482-1821010 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 73, 69 |
| Conread position: | 1-497 |
| Cow position: | chr6:3888375-3887899 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 322 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 413, 178 |
| Conread position: | 1-497 |
| Cow position: | chr6:13945040-13945529 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 204 |
| Conread position: | 1-497 |
| Cow position: | chr6:15140046-15139555 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 322 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 38, 101 |
| Conread position: | 1-497 |
| Cow position: | chr6:17597177-17596677 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 192, 78 |
| Conread position: | 1-497 |
| Cow position: | chr6:21973801-21974288 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 109 |
| Conread position: | 1-497 |
| Cow position: | chr6:25792627-25792138 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 1-497 |
| Cow position: | chr6:35875581-35875092 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 323 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 125, 175 |
| Conread position: | 1-497 |
| Cow position: | chr6:39333738-39333253 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 330 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 58, 110 |
| Conread position: | 1-497 |
| Cow position: | chr6:39910465-39910950 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 205 |
| Conread position: | 1-497 |
| Cow position: | chr6:40276217-40276701 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 325 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 389, 46 |
| Conread position: | 1-497 |
| Cow position: | chr6:40316713-40317211 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 315 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 251, 121 |
| Conread position: | 1-497 |
| Cow position: | chr6:41228575-41229062 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 97 |
| Conread position: | 1-497 |
| Cow position: | chr6:47042086-47041591 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 322 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 182, 121 |
| Conread position: | 1-497 |
| Cow position: | chr6:51715658-51716151 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 325 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 122, 25 |
| Conread position: | 1-497 |
| Cow position: | chr6:58601613-58602098 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 1-497 |
| Cow position: | chr6:65842746-65843234 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 323 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 138, 25 |
| Conread position: | 1-497 |
| Cow position: | chr6:66232939-66233418 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 152, 116 |
| Conread position: | 1-497 |
| Cow position: | chr6:66745127-66745611 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 319 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 214, 25 |
| Conread position: | 1-497 |
| Cow position: | chr6:67265018-67265502 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 316 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 214, 25 |
| Conread position: | 1-499 |
| Cow position: | chr6:65573187-65572713 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 104 |
| Conread position: | 2-337 |
| Cow position: | chr6:27471711-27472032 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 183, 77 |
| Conread position: | 2-497 |
| Cow position: | chr6:55542132-55541637 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 3-307 |
| Cow position: | chr6:6156681-6156976 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 3-394 |
| Cow position: | chr6:44524329-44523924 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 3-482 |
| Cow position: | chr6:28134045-28134512 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 309, 44 |
| Conread position: | 4-446 |
| Cow position: | chr6:1535442-1535012 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 141, 161 |
| Conread position: | 5-394 |
| Cow position: | chr6:17047188-17047574 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 107, 70 |
| Conread position: | 5-491 |
| Cow position: | chr6:3487293-3486812 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 315 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 346, 243 |
| Conread position: | 5-491 |
| Cow position: | chr6:25215339-25215830 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 96, 234 |
| Conread position: | 5-497 |
| Cow position: | chr6:20559968-20559492 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 75, 79 |
| Conread position: | 5-497 |
| Cow position: | chr6:30273760-30273275 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 322 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 152, 105 |
| Conread position: | 6-336 |
| Cow position: | chr6:64814871-64814554 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 112, 51 |
| Conread position: | 8-497 |
| Cow position: | chr6:65820835-65820352 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 313 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 406, 240 |
| Conread position: | 9-323 |
| Cow position: | chr6:34196515-34196822 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 7, 115 |
| Conread position: | 9-340 |
| Cow position: | chr6:27333135-27333453 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 61 |
| Conread position: | 10-180 |
| Cow position: | chr6:8553984-8553812 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 7 |
| Conread position: | 10-499 |
| Cow position: | chr6:65946132-65945670 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 103 |
| Conread position: | 11-499 |
| Cow position: | chr6:19492433-19492885 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 172, 44 |
| Conread position: | 27-497 |
| Cow position: | chr6:21836017-21835578 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 308 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 341, 85 |
| Conread position: | 27-499 |
| Cow position: | chr6:4508756-4509207 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 328 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 196, 24 |
| Conread position: | 59-345 |
| Cow position: | chr6:64790515-64790795 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 66-330 |
| Cow position: | chr6:39019626-39019376 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 80-499 |
| Cow position: | chr6:31301519-31301933 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 113, 62 |
| Conread position: | 83-497 |
| Cow position: | chr6:476755-477157 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 277, 60 |
| Conread position: | 112-497 |
| Cow position: | chr6:13863300-13862916 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 35, 136 |
| Conread position: | 113-474 |
| Cow position: | chr6:58004483-58004831 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 94, 52 |
| Conread position: | 116-493 |
| Cow position: | chr6:15891950-15891587 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 282, 57 |
| Conread position: | 120-476 |
| Cow position: | chr6:49523435-49523784 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 121-452 |
| Cow position: | chr6:30836343-30836010 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 86, 42 |
| Conread position: | 174-497 |
| Cow position: | chr6:24240711-24241023 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 224, 20 |
| Conread position: | 210-491 |
| Cow position: | chr6:7761161-7760885 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 139, 44 |
Show alignments to all cow chromosomes.