Cow genome map
| Conread name: | Pla1-C0000028_H02 |
| Conread position: | 1-215 |
| Cow position: | chr9:28655408-28655618 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 128 |
| Conread position: | 1-229 |
| Cow position: | chr9:26736813-26737040 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 1-252 |
| Cow position: | chr9:10322863-10323112 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-253 |
| Cow position: | chr9:62736728-62736486 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 124 |
| Conread position: | 1-262 |
| Cow position: | chr9:8463714-8463455 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 156, 41 |
| Conread position: | 1-310 |
| Cow position: | chr9:130104-129793 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 209, 140 |
| Conread position: | 1-314 |
| Cow position: | chr9:4836281-4835976 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 103, 196 |
| Conread position: | 1-330 |
| Cow position: | chr9:1995330-1995006 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 134, 248 |
| Conread position: | 1-337 |
| Cow position: | chr9:6250359-6250687 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 136, 56 |
| Conread position: | 1-344 |
| Cow position: | chr9:46859402-46859065 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 245, 0 |
| Conread position: | 1-394 |
| Cow position: | chr9:29027151-29026763 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 1-394 |
| Cow position: | chr9:47003246-47003621 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 1-397 |
| Cow position: | chr9:3727663-3728032 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 1-446 |
| Cow position: | chr9:7061023-7060580 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 130, 109 |
| Conread position: | 1-452 |
| Cow position: | chr9:4649545-4649105 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 1-452 |
| Cow position: | chr9:59481736-59481306 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 300 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 1-464 |
| Cow position: | chr9:221452-221020 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 350, 39 |
| Conread position: | 1-486 |
| Cow position: | chr9:22654636-22655117 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 247 |
| Conread position: | 1-488 |
| Cow position: | chr9:44384320-44384802 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 1-491 |
| Cow position: | chr9:4533554-4534035 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 122, 65 |
| Conread position: | 1-491 |
| Cow position: | chr9:10937655-10938134 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 320 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 156, 109 |
| Conread position: | 1-491 |
| Cow position: | chr9:13474711-13474234 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 147, 56 |
| Conread position: | 1-491 |
| Cow position: | chr9:59537155-59537643 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 134, 109 |
| Conread position: | 1-494 |
| Cow position: | chr9:828048-827565 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 324 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 192, 201 |
| Conread position: | 1-494 |
| Cow position: | chr9:46272181-46272670 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 52 |
| Conread position: | 1-494 |
| Cow position: | chr9:54925608-54926080 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 319 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 96, 25 |
| Conread position: | 1-497 |
| Cow position: | chr9:2212198-2212688 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 148, 129 |
| Conread position: | 1-497 |
| Cow position: | chr9:17063323-17062836 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 317 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 192, 73 |
| Conread position: | 1-497 |
| Cow position: | chr9:18508762-18508278 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 319 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 397, 109 |
| Conread position: | 1-497 |
| Cow position: | chr9:19158479-19157985 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 336 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 156, 109 |
| Conread position: | 1-497 |
| Cow position: | chr9:27783248-27783733 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 156, 164 |
| Conread position: | 1-497 |
| Cow position: | chr9:27935437-27935928 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 325 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 192, 204 |
| Conread position: | 1-497 |
| Cow position: | chr9:28679032-28679513 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 192, 204 |
| Conread position: | 1-497 |
| Cow position: | chr9:32970007-32970490 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 71, 113 |
| Conread position: | 1-497 |
| Cow position: | chr9:37970147-37969661 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 312 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 401, 153 |
| Conread position: | 1-497 |
| Cow position: | chr9:38677204-38677692 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 204 |
| Conread position: | 1-497 |
| Cow position: | chr9:42310738-42311226 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 320 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 1-497 |
| Cow position: | chr9:44819208-44819684 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 280, 9 |
| Conread position: | 1-497 |
| Cow position: | chr9:51181117-51180632 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 121 |
| Conread position: | 1-499 |
| Cow position: | chr9:1250940-1250448 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 204 |
| Conread position: | 1-499 |
| Cow position: | chr9:1981333-1981810 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 14, 79 |
| Conread position: | 1-499 |
| Cow position: | chr9:30827797-30828291 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 317 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 209, 195 |
| Conread position: | 1-499 |
| Cow position: | chr9:46460990-46460519 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 56 |
| Conread position: | 1-499 |
| Cow position: | chr9:47747838-47748305 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 195, 62 |
| Conread position: | 2-155 |
| Cow position: | chr9:41467889-41468041 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 2-337 |
| Cow position: | chr9:60276957-60276631 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 2-446 |
| Cow position: | chr9:7158886-7158447 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 296 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 81, 68 |
| Conread position: | 2-494 |
| Cow position: | chr9:650966-650480 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 315 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 289, 221 |
| Conread position: | 3-243 |
| Cow position: | chr9:46263304-46263066 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 132, 100 |
| Conread position: | 3-332 |
| Cow position: | chr9:25188162-25188479 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 125 |
| Conread position: | 3-334 |
| Cow position: | chr9:16998917-16999244 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 73, 119 |
| Conread position: | 3-394 |
| Cow position: | chr9:39730996-39730622 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 3-494 |
| Cow position: | chr9:9365410-9364957 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 321 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 51, 89 |
| Conread position: | 3-497 |
| Cow position: | chr9:5005031-5005533 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 323 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 119, 239 |
| Conread position: | 3-497 |
| Cow position: | chr9:21410359-21410853 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 307 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 114, 271 |
| Conread position: | 4-499 |
| Cow position: | chr9:38440258-38440736 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 136, 99 |
| Conread position: | 6-491 |
| Cow position: | chr9:28022871-28023342 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 310 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 129, 63 |
| Conread position: | 6-497 |
| Cow position: | chr9:17304912-17304428 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 325 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 151, 116 |
| Conread position: | 6-499 |
| Cow position: | chr9:18497032-18497509 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 332, 90 |
| Conread position: | 7-252 |
| Cow position: | chr9:22089583-22089814 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 8-394 |
| Cow position: | chr9:20176649-20176266 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 45, 247 |
| Conread position: | 9-264 |
| Cow position: | chr9:13510351-13510103 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 11-494 |
| Cow position: | chr9:35595009-35594537 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 102, 169 |
| Conread position: | 11-494 |
| Cow position: | chr9:56807300-56806834 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 423, 35 |
| Conread position: | 31-494 |
| Cow position: | chr9:34724601-34725052 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 140 |
| Conread position: | 55-252 |
| Cow position: | chr9:55317283-55317083 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 57-497 |
| Cow position: | chr9:27036022-27036448 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 86 |
| Conread position: | 63-414 |
| Cow position: | chr9:5141824-5142165 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 335, 49 |
| Conread position: | 74-491 |
| Cow position: | chr9:47740808-47741201 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 133, 92 |
| Conread position: | 80-452 |
| Cow position: | chr9:3224495-3224139 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 318, 79 |
| Conread position: | 87-491 |
| Cow position: | chr9:7003876-7004275 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 23 |
| Conread position: | 88-494 |
| Cow position: | chr9:9562899-9562504 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 119, 102 |
| Conread position: | 92-485 |
| Cow position: | chr9:42979573-42979192 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 49 |
| Conread position: | 96-335 |
| Cow position: | chr9:3544033-3544270 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 116-494 |
| Cow position: | chr9:12912952-12913322 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 164, 17 |
Show alignments to all cow chromosomes.