Cow genome map

Conread name: Pla1-C0000038_D23

Conread position: 1-203
Cow position: chr26:4396999-4397192 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 68, 49

Conread position: 1-256
Cow position: chr26:7961357-7961604 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 209, 49

Conread position: 1-300
Cow position: chr26:5685162-5685463 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 222
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 29, 53

Conread position: 1-304
Cow position: chr26:6323390-6323684 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 25

Conread position: 1-415
Cow position: chr26:23272511-23272906 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 28

Conread position: 1-458
Cow position: chr26:27491777-27491323 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 305
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 123, 25

Conread position: 1-462
Cow position: chr26:3755966-3756403 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 26

Conread position: 1-470
Cow position: chr26:21859543-21860015 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 19

Conread position: 5-190
Cow position: chr26:1627912-1628091 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 63, 44

Conread position: 5-268
Cow position: chr26:8277843-8277582 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 206
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 67, 22

Conread position: 5-474
Cow position: chr26:2196867-2196393 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 46

Conread position: 6-281
Cow position: chr26:818741-818468 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 191
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 9, 46

Conread position: 17-444
Cow position: chr26:17288936-17289363 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 110

Conread position: 18-470
Cow position: chr26:14080456-14080897 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 17

Conread position: 19-275
Cow position: chr26:9867376-9867124 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 186, 33

Conread position: 19-479
Cow position: chr26:2770104-2769638 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 53

Conread position: 20-270
Cow position: chr26:5552738-5552988 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 37, 33

Conread position: 21-269
Cow position: chr26:19769345-19769099 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 29

Conread position: 21-277
Cow position: chr26:1673794-1674048 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 113, 29

Conread position: 21-416
Cow position: chr26:4748121-4747727 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 102

Conread position: 21-419
Cow position: chr26:2408972-2408594 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 91

Conread position: 21-478
Cow position: chr26:14924239-14924684 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 29

Conread position: 25-396
Cow position: chr26:34031843-34032208 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 267
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 47, 18

Conread position: 27-355
Cow position: chr26:10768153-10767843 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 178, 14

Conread position: 29-393
Cow position: chr26:7103289-7102935 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 21

Conread position: 29-409
Cow position: chr26:33227552-33227918 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 270
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 22

Conread position: 30-279
Cow position: chr26:16549729-16549980 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 46, 20

Conread position: 30-325
Cow position: chr26:13021400-13021107 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 218
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 42, 20

Conread position: 30-328
Cow position: chr26:33567292-33567003 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 206
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 165, 23

Conread position: 30-355
Cow position: chr26:33745662-33745989 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 23

Conread position: 30-380
Cow position: chr26:11134947-11134591 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 42, 20

Conread position: 30-386
Cow position: chr26:26466969-26466628 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 234
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 221, 20

Conread position: 33-410
Cow position: chr26:2610048-2609677 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 267
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 10, 21

Conread position: 33-462
Cow position: chr26:18718985-18719440 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 17

Conread position: 39-343
Cow position: chr26:8746077-8745766 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 219
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 18, 14

Conread position: 52-259
Cow position: chr26:1587371-1587568 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 144, 29

Conread position: 52-266
Cow position: chr26:32955857-32955650 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 75

Conread position: 52-270
Cow position: chr26:9099985-9099776 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 73

Conread position: 52-270
Cow position: chr26:10813981-10814186 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 21, 0

Conread position: 52-302
Cow position: chr26:34738381-34738132 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 82

Conread position: 52-332
Cow position: chr26:8700283-8700002 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 20, 75

Conread position: 52-372
Cow position: chr26:22162101-22161774 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 231
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 159, 71

Conread position: 52-403
Cow position: chr26:3921980-3921650 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 239
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 73

Conread position: 52-419
Cow position: chr26:2389284-2388932 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 253
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 72, 164

Conread position: 52-474
Cow position: chr26:12668967-12669396 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 22

Conread position: 52-476
Cow position: chr26:9064114-9064534 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 72

Conread position: 52-479
Cow position: chr26:9632602-9632160 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 28

Conread position: 53-406
Cow position: chr26:29353744-29353388 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 72

Conread position: 54-282
Cow position: chr26:28760317-28760096 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 37

Conread position: 54-416
Cow position: chr26:19774534-19774165 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 255
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 104, 71

Conread position: 54-477
Cow position: chr26:9666638-9666215 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 55

Conread position: 55-378
Cow position: chr26:20129905-20129581 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 71

Conread position: 55-397
Cow position: chr26:34314447-34314805 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 244
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 82, 68

Conread position: 56-229
Cow position: chr26:11370705-11370875 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 16, 53

Conread position: 56-474
Cow position: chr26:17204367-17203945 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 64

Conread position: 58-354
Cow position: chr26:21991885-21992173 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 209
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 14, 67

Conread position: 61-375
Cow position: chr26:31605184-31605499 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 210
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 157, 63

Conread position: 64-417
Cow position: chr26:15211594-15211938 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 234
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 8, 62

Conread position: 65-477
Cow position: chr26:21637256-21636832 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 286
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 76, 59

Conread position: 66-386
Cow position: chr26:6006264-6005953 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 221
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 89, 155

Conread position: 69-470
Cow position: chr26:16604065-16604486 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 159

Conread position: 72-476
Cow position: chr26:32866100-32865691 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 14

Conread position: 74-281
Cow position: chr26:30128229-30128025 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 73, 50

Conread position: 85-332
Cow position: chr26:20013280-20013523 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 170
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 108, 39

Conread position: 94-332
Cow position: chr26:32672630-32672392 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 51, 30

Conread position: 94-471
Cow position: chr26:19110712-19111107 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 29

Conread position: 99-290
Cow position: chr26:12652384-12652210 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 82, 24

Conread position: 116-352
Cow position: chr26:22249653-22249408 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 7, 152

Conread position: 117-327
Cow position: chr26:23315596-23315813 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 6, 0

Conread position: 117-443
Cow position: chr26:35448893-35449225 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 226
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 6, 21

Conread position: 121-412
Cow position: chr26:30605528-30605237 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 160

Conread position: 122-448
Cow position: chr26:19178456-19178768 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 295, 15

Conread position: 123-449
Cow position: chr26:33253483-33253153 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 222
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 72, 31

Conread position: 138-477
Cow position: chr26:12519870-12520229 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 140-475
Cow position: chr26:27585628-27585971 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 17

Conread position: 141-396
Cow position: chr26:8642801-8643055 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 176
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 17

Conread position: 145-310
Cow position: chr26:19445986-19446149 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 73, 68

Conread position: 160-473
Cow position: chr26:33194521-33194823 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 53, 34

Conread position: 180-476
Cow position: chr26:6470379-6470075 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 201
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 9, 95

Conread position: 186-413
Cow position: chr26:17155424-17155199 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 36, 94

Conread position: 200-467
Cow position: chr26:8651691-8651420 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 197
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 25, 108

Conread position: 201-477
Cow position: chr26:32215359-32215647 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 197
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 18, 84

Conread position: 204-412
Cow position: chr26:12125124-12124925 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 210-338
Cow position: chr26:6299063-6299191 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 217-415
Cow position: chr26:19903312-19903512 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 111, 163

Conread position: 221-412
Cow position: chr26:34521505-34521701 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 71, 53

Conread position: 222-475
Cow position: chr26:11568033-11567779 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 49, 56

Conread position: 228-478
Cow position: chr26:7955796-7956050 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 198
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 101, 32

Conread position: 236-412
Cow position: chr26:34119086-34118905 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 95, 133

Conread position: 264-474
Cow position: chr26:24183066-24182855 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 12, 119

Conread position: 274-444
Cow position: chr26:19935368-19935193 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 143, 13

Conread position: 280-402
Cow position: chr26:8823712-8823834 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 283-470
Cow position: chr26:10523450-10523259 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 130, 68

Conread position: 289-474
Cow position: chr26:10137738-10137544 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 113

Show alignments to all cow chromosomes.