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Cow genome map

           
Conread name:
           
Pla1-C0000038_D23
        

               
Conread position:
               
1-263
               

               
Cow position:
               
chr5:14538915-14538670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
221, 25
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr5:6086828-6086564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr5:3058404-3058677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 123
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr5:9430740-9430458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
31, 134
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr5:43329959-43329652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr5:29504839-29505149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr5:65593611-65593926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr5:10261508-10261178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr5:45940879-45940554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr5:20974712-20974358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr5:45226095-45225646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr5:41604344-41604835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr5:56523911-56524174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
143, 23
               

               
Conread position:
               
4-473
               

               
Cow position:
               
chr5:40711718-40711240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
4-477
               

               
Cow position:
               
chr5:17027835-17028306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 22
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr5:1398352-1398087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
132, 38
               

               
Conread position:
               
6-444
               

               
Cow position:
               
chr5:25225925-25225467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 126
               

               
Conread position:
               
6-448
               

               
Cow position:
               
chr5:21828595-21829040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
6-461
               

               
Cow position:
               
chr5:1344123-1343662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
9-313
               

               
Cow position:
               
chr5:66831983-66831675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
9-329
               

               
Cow position:
               
chr5:65924959-65924639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
10-271
               

               
Cow position:
               
chr5:58855841-58856100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
10-407
               

               
Cow position:
               
chr5:51999959-52000352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
110, 9
               

               
Conread position:
               
10-469
               

               
Cow position:
               
chr5:46797991-46798445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
13-315
               

               
Cow position:
               
chr5:37714168-37713857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
14-305
               

               
Cow position:
               
chr5:37377620-37377891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
178, 34
               

               
Conread position:
               
14-396
               

               
Cow position:
               
chr5:37646810-37646421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 39
               

               
Conread position:
               
14-402
               

               
Cow position:
               
chr5:55989483-55989869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
14-415
               

               
Cow position:
               
chr5:48144049-48143647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 36
               

               
Conread position:
               
14-462
               

               
Cow position:
               
chr5:30332683-30333146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
15-415
               

               
Cow position:
               
chr5:19905538-19905141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
16-352
               

               
Cow position:
               
chr5:67243668-67243995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
18-396
               

               
Cow position:
               
chr5:68480966-68481345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
19-327
               

               
Cow position:
               
chr5:34115409-34115702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
19-332
               

               
Cow position:
               
chr5:50900653-50900952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
19-411
               

               
Cow position:
               
chr5:72041970-72042342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
19-412
               

               
Cow position:
               
chr5:26046081-26046461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 31
               

               
Conread position:
               
19-415
               

               
Cow position:
               
chr5:41636615-41637006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 106
               

               
Conread position:
               
20-259
               

               
Cow position:
               
chr5:3824845-3825071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
21-262
               

               
Cow position:
               
chr5:33467297-33467055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 106
               

               
Conread position:
               
21-273
               

               
Cow position:
               
chr5:39049206-39049445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
21-328
               

               
Cow position:
               
chr5:58144858-58144551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
21-415
               

               
Cow position:
               
chr5:17869464-17869827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
22-477
               

               
Cow position:
               
chr5:56384977-56385425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
24-280
               

               
Cow position:
               
chr5:35684686-35684940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
24-382
               

               
Cow position:
               
chr5:22839729-22839365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 100
               

               
Conread position:
               
24-476
               

               
Cow position:
               
chr5:40928221-40927785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
47, 26
               

               
Conread position:
               
25-327
               

               
Cow position:
               
chr5:30253496-30253790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
185, 18
               

               
Conread position:
               
26-474
               

               
Cow position:
               
chr5:64398757-64399211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 6
               

               
Conread position:
               
26-476
               

               
Cow position:
               
chr5:27615268-27615722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
29-263
               

               
Cow position:
               
chr5:56753484-56753716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
29-432
               

               
Cow position:
               
chr5:62172172-62172568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
29-477
               

               
Cow position:
               
chr5:23367016-23366558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
30-303
               

               
Cow position:
               
chr5:72150008-72150275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
30-325
               

               
Cow position:
               
chr5:6045044-6045341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
117, 21
               

               
Conread position:
               
30-327
               

               
Cow position:
               
chr5:41523035-41522751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
30-401
               

               
Cow position:
               
chr5:22934698-22934328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 20
               

               
Conread position:
               
30-415
               

               
Cow position:
               
chr5:26376326-26376686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
30-415
               

               
Cow position:
               
chr5:61488353-61487970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 20
               

               
Conread position:
               
30-470
               

               
Cow position:
               
chr5:72564516-72564963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
165, 94
               

               
Conread position:
               
30-477
               

               
Cow position:
               
chr5:43923391-43922940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
30-479
               

               
Cow position:
               
chr5:14153900-14154355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
31-269
               

               
Cow position:
               
chr5:34922076-34921843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
31-303
               

               
Cow position:
               
chr5:10789918-10789643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
32-327
               

               
Cow position:
               
chr5:26377907-26377620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
33-268
               

               
Cow position:
               
chr5:6986919-6987156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
33-396
               

               
Cow position:
               
chr5:35209713-35209354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
33-483
               

               
Cow position:
               
chr5:59303507-59303076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 15
               

               
Conread position:
               
34-322
               

               
Cow position:
               
chr5:16508854-16509144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
19, 7
               

               
Conread position:
               
34-348
               

               
Cow position:
               
chr5:32378627-32378917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
34-477
               

               
Cow position:
               
chr5:48573999-48573570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
37-270
               

               
Cow position:
               
chr5:45036785-45037016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
153, 14
               

               
Conread position:
               
42-325
               

               
Cow position:
               
chr5:14314287-14314577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
43-475
               

               
Cow position:
               
chr5:69773337-69773751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 82
               

               
Conread position:
               
45-412
               

               
Cow position:
               
chr5:52165413-52165040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
75, 90
               

               
Conread position:
               
49-377
               

               
Cow position:
               
chr5:3439288-3438978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
50-396
               

               
Cow position:
               
chr5:54111692-54112036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
51-437
               

               
Cow position:
               
chr5:48535581-48535963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
19, 75
               

               
Conread position:
               
51-476
               

               
Cow position:
               
chr5:27411615-27411196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
52-270
               

               
Cow position:
               
chr5:65933152-65932933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
52-271
               

               
Cow position:
               
chr5:56433577-56433800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
52-276
               

               
Cow position:
               
chr5:27154798-27155025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
52-278
               

               
Cow position:
               
chr5:27690283-27690057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
14, 73
               

               
Conread position:
               
52-282
               

               
Cow position:
               
chr5:39710615-39710849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
52-305
               

               
Cow position:
               
chr5:1276699-1276436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 71
               

               
Conread position:
               
52-313
               

               
Cow position:
               
chr5:41303315-41303051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
52-327
               

               
Cow position:
               
chr5:26467396-26467675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
52-333
               

               
Cow position:
               
chr5:16894000-16893716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
52-372
               

               
Cow position:
               
chr5:46510092-46509766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
52-396
               

               
Cow position:
               
chr5:23753449-23753099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
85, 73
               

               
Conread position:
               
52-412
               

               
Cow position:
               
chr5:18104375-18104008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
52-414
               

               
Cow position:
               
chr5:4710366-4710011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
153, 53
               

               
Conread position:
               
52-414
               

               
Cow position:
               
chr5:26595327-26594958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
52-414
               

               
Cow position:
               
chr5:34232519-34232892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
52-470
               

               
Cow position:
               
chr5:68082191-68081777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 72
               

               
Conread position:
               
52-476
               

               
Cow position:
               
chr5:328406-327993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
52-476
               

               
Cow position:
               
chr5:51502788-51503202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
52-477
               

               
Cow position:
               
chr5:13044635-13044201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
52-478
               

               
Cow position:
               
chr5:4630904-4631308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 71
               

               
Conread position:
               
52-478
               

               
Cow position:
               
chr5:28946283-28945849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 78
               

               
Conread position:
               
53-232
               

               
Cow position:
               
chr5:50263822-50263647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
53-414
               

               
Cow position:
               
chr5:23535946-23536321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
14, 72
               

               
Conread position:
               
54-311
               

               
Cow position:
               
chr5:41229490-41229741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 64
               

               
Conread position:
               
54-476
               

               
Cow position:
               
chr5:1950282-1949848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
54-479
               

               
Cow position:
               
chr5:24175152-24175583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
55-325
               

               
Cow position:
               
chr5:65752635-65752907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
55-333
               

               
Cow position:
               
chr5:27492257-27492538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
65, 20
               

               
Conread position:
               
55-388
               

               
Cow position:
               
chr5:38805565-38805230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 138
               

               
Conread position:
               
55-419
               

               
Cow position:
               
chr5:34183996-34184369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
55-477
               

               
Cow position:
               
chr5:48757723-48758151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
55-478
               

               
Cow position:
               
chr5:50425699-50425276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
56-272
               

               
Cow position:
               
chr5:72891971-72891759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 70
               

               
Conread position:
               
56-352
               

               
Cow position:
               
chr5:64137031-64137334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
10, 69
               

               
Conread position:
               
56-473
               

               
Cow position:
               
chr5:40233913-40234317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
57-476
               

               
Cow position:
               
chr5:39442073-39442506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr5:65941472-65941203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 67
               

               
Conread position:
               
61-275
               

               
Cow position:
               
chr5:62027161-62026946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
131, 62
               

               
Conread position:
               
62-328
               

               
Cow position:
               
chr5:35235923-35235659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
63-270
               

               
Cow position:
               
chr5:51315058-51314851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
63-313
               

               
Cow position:
               
chr5:44049490-44049737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
146, 60
               

               
Conread position:
               
65-413
               

               
Cow position:
               
chr5:6504090-6503742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
144, 58
               

               
Conread position:
               
66-415
               

               
Cow position:
               
chr5:504119-503781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
311, 57
               

               
Conread position:
               
66-415
               

               
Cow position:
               
chr5:72344351-72344011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
67-477
               

               
Cow position:
               
chr5:58320670-58320260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 56
               

               
Conread position:
               
69-414
               

               
Cow position:
               
chr5:1688319-1687974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
54, 98
               

               
Conread position:
               
72-327
               

               
Cow position:
               
chr5:23169022-23168777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
73-276
               

               
Cow position:
               
chr5:45409123-45409323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
76-415
               

               
Cow position:
               
chr5:32282131-32282475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 47
               

               
Conread position:
               
78-475
               

               
Cow position:
               
chr5:3649658-3649255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 188
               

               
Conread position:
               
81-475
               

               
Cow position:
               
chr5:31561341-31561733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 42
               

               
Conread position:
               
89-305
               

               
Cow position:
               
chr5:17644842-17644627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
102, 35
               

               
Conread position:
               
94-387
               

               
Cow position:
               
chr5:55928761-55929058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
105, 30
               

               
Conread position:
               
96-302
               

               
Cow position:
               
chr5:53146066-53145859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
96-479
               

               
Cow position:
               
chr5:23529458-23529070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
100-382
               

               
Cow position:
               
chr5:36486310-36486602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 187
               

               
Conread position:
               
100-415
               

               
Cow position:
               
chr5:43110387-43110691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
101-332
               

               
Cow position:
               
chr5:29980160-29979928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
101-391
               

               
Cow position:
               
chr5:34167786-34168081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
103-292
               

               
Cow position:
               
chr5:41452839-41452651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 21
               

               
Conread position:
               
107-415
               

               
Cow position:
               
chr5:73526207-73526508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
108-415
               

               
Cow position:
               
chr5:30978191-30978495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
108-416
               

               
Cow position:
               
chr5:33265617-33265324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
119-270
               

               
Cow position:
               
chr5:59356828-59356986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
121-266
               

               
Cow position:
               
chr5:10248539-10248689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
21, 80
               

               
Conread position:
               
121-468
               

               
Cow position:
               
chr5:37068735-37069083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
121-475
               

               
Cow position:
               
chr5:38629131-38629495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
121-477
               

               
Cow position:
               
chr5:54089882-54090243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
121-479
               

               
Cow position:
               
chr5:3752709-3753062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
296, 50
               

               
Conread position:
               
122-305
               

               
Cow position:
               
chr5:71579018-71579203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 155
               

               
Conread position:
               
125-325
               

               
Cow position:
               
chr5:45397426-45397620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
125-327
               

               
Cow position:
               
chr5:44028454-44028254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 96
               

               
Conread position:
               
126-354
               

               
Cow position:
               
chr5:39182063-39181836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 106
               

               
Conread position:
               
126-475
               

               
Cow position:
               
chr5:58748611-58748976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
127-432
               

               
Cow position:
               
chr5:55955760-55956074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
64, 5
               

               
Conread position:
               
132-276
               

               
Cow position:
               
chr5:70952021-70951875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
132-475
               

               
Cow position:
               
chr5:48405319-48404987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
90, 29
               

               
Conread position:
               
134-477
               

               
Cow position:
               
chr5:73556329-73555990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
140-275
               

               
Cow position:
               
chr5:42795011-42794881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
140-302
               

               
Cow position:
               
chr5:7921537-7921372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 129
               

               
Conread position:
               
145-475
               

               
Cow position:
               
chr5:29844147-29844489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 130
               

               
Conread position:
               
146-396
               

               
Cow position:
               
chr5:34483666-34483410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
76, 46
               

               
Conread position:
               
147-332
               

               
Cow position:
               
chr5:24485565-24485379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
65, 11
               

               
Conread position:
               
147-471
               

               
Cow position:
               
chr5:63188454-63188127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 28
               

               
Conread position:
               
150-458
               

               
Cow position:
               
chr5:60747403-60747096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
153-415
               

               
Cow position:
               
chr5:36407034-36407293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
69, 118
               

               
Conread position:
               
153-416
               

               
Cow position:
               
chr5:13906743-13906996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
160-415
               

               
Cow position:
               
chr5:18553785-18554034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
160-424
               

               
Cow position:
               
chr5:6891135-6890873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 161
               

               
Conread position:
               
163-414
               

               
Cow position:
               
chr5:49474659-49474405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 57
               

               
Conread position:
               
164-414
               

               
Cow position:
               
chr5:4927680-4927426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
58, 116
               

               
Conread position:
               
164-474
               

               
Cow position:
               
chr5:47681115-47680809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 30
               

               
Conread position:
               
166-476
               

               
Cow position:
               
chr5:49567317-49567631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
7, 60
               

               
Conread position:
               
170-401
               

               
Cow position:
               
chr5:21535221-21534983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
185-477
               

               
Cow position:
               
chr5:59449666-59449369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
22, 206
               

               
Conread position:
               
189-414
               

               
Cow position:
               
chr5:17267983-17267751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
189-478
               

               
Cow position:
               
chr5:41945768-41946058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
191-477
               

               
Cow position:
               
chr5:57381454-57381756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
210-477
               

               
Cow position:
               
chr5:66189924-66190195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
121, 5
               

               
Conread position:
               
216-476
               

               
Cow position:
               
chr5:47836487-47836761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
107, 56
               

               
Conread position:
               
224-475
               

               
Cow position:
               
chr5:67150062-67149809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
193, 60
               

               
Conread position:
               
226-480
               

               
Cow position:
               
chr5:34279650-34279399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
195, 53
               

               
Conread position:
               
231-476
               

               
Cow position:
               
chr5:34914598-34914347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 7
               

               
Conread position:
               
233-477
               

               
Cow position:
               
chr5:36487738-36487484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
101, 44
               

               
Conread position:
               
236-475
               

               
Cow position:
               
chr5:45396450-45396204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
240-445
               

               
Cow position:
               
chr5:49656057-49655849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
177, 37
               

               
Conread position:
               
244-475
               

               
Cow position:
               
chr5:21195145-21194914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
173, 53
               

               
Conread position:
               
260-476
               

               
Cow position:
               
chr5:58343841-58344068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 7
               
Show alignments to all cow chromosomes.