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Cow genome map

           
Conread name:
           
Pla1-C0000039_N19
        

               
Conread position:
               
80-502
               

               
Cow position:
               
chr11:29960555-29960129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 44
               

               
Conread position:
               
145-451
               

               
Cow position:
               
chr11:27719140-27719448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
146-339
               

               
Cow position:
               
chr11:63478561-63478361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 158
               

               
Conread position:
               
153-329
               

               
Cow position:
               
chr11:25320357-25320179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
153-342
               

               
Cow position:
               
chr11:58186063-58185865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 186
               

               
Conread position:
               
153-406
               

               
Cow position:
               
chr11:18785706-18785950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
98, 18
               

               
Conread position:
               
153-422
               

               
Cow position:
               
chr11:9368997-9368730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
97, 72
               

               
Conread position:
               
153-449
               

               
Cow position:
               
chr11:57873999-57873706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 111
               

               
Conread position:
               
153-454
               

               
Cow position:
               
chr11:69392719-69392428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
140, 18
               

               
Conread position:
               
153-485
               

               
Cow position:
               
chr11:71390383-71390723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 153
               

               
Conread position:
               
153-500
               

               
Cow position:
               
chr11:12111285-12111640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
84, 142
               

               
Conread position:
               
153-502
               

               
Cow position:
               
chr11:17227460-17227823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 171
               

               
Conread position:
               
153-507
               

               
Cow position:
               
chr11:30708696-30708317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 239
               

               
Conread position:
               
153-507
               

               
Cow position:
               
chr11:42359284-42358939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
112, 40
               

               
Conread position:
               
154-388
               

               
Cow position:
               
chr11:18915200-18914962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 214
               

               
Conread position:
               
154-487
               

               
Cow position:
               
chr11:64905166-64904835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
97, 14
               

               
Conread position:
               
154-503
               

               
Cow position:
               
chr11:866471-866124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 192
               

               
Conread position:
               
155-488
               

               
Cow position:
               
chr11:258985-259335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
155-502
               

               
Cow position:
               
chr11:13061065-13061407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 58
               

               
Conread position:
               
156-336
               

               
Cow position:
               
chr11:51195909-51196096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
156-502
               

               
Cow position:
               
chr11:18699058-18698700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
73, 212
               

               
Conread position:
               
157-483
               

               
Cow position:
               
chr11:55494851-55494522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
157-501
               

               
Cow position:
               
chr11:62490607-62490260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
157-502
               

               
Cow position:
               
chr11:64044403-64044064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
160-502
               

               
Cow position:
               
chr11:17661247-17660917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 35
               

               
Conread position:
               
161-363
               

               
Cow position:
               
chr11:16801795-16801992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
161-441
               

               
Cow position:
               
chr11:8584497-8584205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
161-494
               

               
Cow position:
               
chr11:65607508-65607859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
35, 232
               

               
Conread position:
               
161-502
               

               
Cow position:
               
chr11:33348017-33348363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
161-511
               

               
Cow position:
               
chr11:35212989-35213347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 10
               

               
Conread position:
               
163-340
               

               
Cow position:
               
chr11:48315219-48315414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
163-346
               

               
Cow position:
               
chr11:63165470-63165670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
163-408
               

               
Cow position:
               
chr11:82740672-82740427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
77, 10
               

               
Conread position:
               
163-411
               

               
Cow position:
               
chr11:17721620-17721888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
61, 232
               

               
Conread position:
               
163-416
               

               
Cow position:
               
chr11:19946602-19946345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
163-416
               

               
Cow position:
               
chr11:41603520-41603780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
63, 104
               

               
Conread position:
               
163-436
               

               
Cow position:
               
chr11:31228134-31227858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
73, 21
               

               
Conread position:
               
163-465
               

               
Cow position:
               
chr11:67615072-67615382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr11:41272299-41271964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 61
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr11:47899430-47899102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 9
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr11:49153121-49152774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
61, 222
               

               
Conread position:
               
163-506
               

               
Cow position:
               
chr11:11752355-11752700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
163-507
               

               
Cow position:
               
chr11:39115653-39115308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 17
               

               
Conread position:
               
163-507
               

               
Cow position:
               
chr11:42083634-42083294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 155
               

               
Conread position:
               
163-507
               

               
Cow position:
               
chr11:63470038-63469697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 212
               

               
Conread position:
               
163-507
               

               
Cow position:
               
chr11:83043186-83043546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 235
               

               
Conread position:
               
164-489
               

               
Cow position:
               
chr11:24602138-24601810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
165-291
               

               
Cow position:
               
chr11:75918757-75918626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
165-347
               

               
Cow position:
               
chr11:30842846-30843043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
165-464
               

               
Cow position:
               
chr11:40608414-40608734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 160
               

               
Conread position:
               
165-482
               

               
Cow position:
               
chr11:62573849-62574162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
92, 102
               

               
Conread position:
               
165-486
               

               
Cow position:
               
chr11:61427747-61427446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
91, 23
               

               
Conread position:
               
165-502
               

               
Cow position:
               
chr11:27248667-27248315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 158
               

               
Conread position:
               
165-502
               

               
Cow position:
               
chr11:45631601-45631939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 159
               

               
Conread position:
               
165-507
               

               
Cow position:
               
chr11:11469476-11469819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
165-507
               

               
Cow position:
               
chr11:68904909-68905255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 207
               

               
Conread position:
               
165-509
               

               
Cow position:
               
chr11:77745070-77745442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 251
               

               
Conread position:
               
166-291
               

               
Cow position:
               
chr11:57170432-57170565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
166-311
               

               
Cow position:
               
chr11:62483796-62483950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
166-313
               

               
Cow position:
               
chr11:13684543-13684701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
166-332
               

               
Cow position:
               
chr11:46784641-46784465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
166-335
               

               
Cow position:
               
chr11:22583129-22582962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
166-338
               

               
Cow position:
               
chr11:9699077-9699260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
166-338
               

               
Cow position:
               
chr11:15607811-15607987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
166-376
               

               
Cow position:
               
chr11:48512321-48512111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
85, 66
               

               
Conread position:
               
166-377
               

               
Cow position:
               
chr11:20205680-20205906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
166-389
               

               
Cow position:
               
chr11:25119758-25119995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
71, 181
               

               
Conread position:
               
166-403
               

               
Cow position:
               
chr11:30867355-30867105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
71, 221
               

               
Conread position:
               
166-406
               

               
Cow position:
               
chr11:47725067-47724824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
166-417
               

               
Cow position:
               
chr11:17676197-17676460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
67, 213
               

               
Conread position:
               
166-421
               

               
Cow position:
               
chr11:62812774-62813045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
166-426
               

               
Cow position:
               
chr11:30211063-30210806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
166-428
               

               
Cow position:
               
chr11:46922709-46922999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
166-432
               

               
Cow position:
               
chr11:249327-249591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
86, 52
               

               
Conread position:
               
166-432
               

               
Cow position:
               
chr11:67871445-67871711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
85, 62
               

               
Conread position:
               
166-436
               

               
Cow position:
               
chr11:48086096-48085807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
66, 228
               

               
Conread position:
               
166-441
               

               
Cow position:
               
chr11:39060427-39060716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
166-448
               

               
Cow position:
               
chr11:42067042-42066738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
66, 231
               

               
Conread position:
               
166-451
               

               
Cow position:
               
chr11:83032855-83032558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
71, 217
               

               
Conread position:
               
166-456
               

               
Cow position:
               
chr11:67614747-67615059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 246
               

               
Conread position:
               
166-461
               

               
Cow position:
               
chr11:62789305-62788993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 228
               

               
Conread position:
               
166-473
               

               
Cow position:
               
chr11:49057561-49057255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
64, 139
               

               
Conread position:
               
166-474
               

               
Cow position:
               
chr11:23407638-23407313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 224
               

               
Conread position:
               
166-494
               

               
Cow position:
               
chr11:67600956-67600614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
60, 206
               

               
Conread position:
               
166-494
               

               
Cow position:
               
chr11:75874594-75874920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 211
               

               
Conread position:
               
166-500
               

               
Cow position:
               
chr11:21728111-21728444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
166-500
               

               
Cow position:
               
chr11:30830445-30830791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 27
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:2917415-2917763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 221
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:9270560-9270905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 99
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:15632382-15632734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:16342070-16342416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:19500626-19500957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 162
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:22931819-22932149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
206, 76
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:44032184-44031825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 26
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:49149224-49148860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
73, 203
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:52297045-52297398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 197
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:62239919-62239569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 196
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:74316884-74316536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 207
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:77683330-77682989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
127, 59
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr11:80819847-80820173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
166-503
               

               
Cow position:
               
chr11:51729452-51729113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 214
               

               
Conread position:
               
166-507
               

               
Cow position:
               
chr11:20238854-20238488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
166-507
               

               
Cow position:
               
chr11:27747096-27746743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 216
               

               
Conread position:
               
166-507
               

               
Cow position:
               
chr11:48932411-48932769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
109, 88
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr11:18484023-18484351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
73, 131
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr11:48544614-48544251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 231
               

               
Conread position:
               
167-491
               

               
Cow position:
               
chr11:30934569-30934258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
167-502
               

               
Cow position:
               
chr11:38639276-38638946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 182
               

               
Conread position:
               
168-331
               

               
Cow position:
               
chr11:22884582-22884405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
72, 153
               

               
Conread position:
               
168-342
               

               
Cow position:
               
chr11:56115113-56114919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
168-502
               

               
Cow position:
               
chr11:13042972-13043321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 228
               

               
Conread position:
               
168-509
               

               
Cow position:
               
chr11:22977706-22978051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
169-314
               

               
Cow position:
               
chr11:38194352-38194201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
169-403
               

               
Cow position:
               
chr11:4637000-4637249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
64, 222
               

               
Conread position:
               
169-423
               

               
Cow position:
               
chr11:55911472-55911732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
64, 130
               

               
Conread position:
               
169-432
               

               
Cow position:
               
chr11:17036357-17036636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
65, 220
               

               
Conread position:
               
169-447
               

               
Cow position:
               
chr11:63919892-63920170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 203
               

               
Conread position:
               
169-461
               

               
Cow position:
               
chr11:43360612-43360917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
65, 150
               

               
Conread position:
               
169-484
               

               
Cow position:
               
chr11:64335005-64334699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
169-487
               

               
Cow position:
               
chr11:56821087-56821415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
81, 58
               

               
Conread position:
               
169-489
               

               
Cow position:
               
chr11:48296200-48295869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 37
               

               
Conread position:
               
169-502
               

               
Cow position:
               
chr11:2925133-2925465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
169-511
               

               
Cow position:
               
chr11:14470536-14470181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
70, 161
               

               
Conread position:
               
170-368
               

               
Cow position:
               
chr11:27461937-27462143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
63, 140
               

               
Conread position:
               
170-378
               

               
Cow position:
               
chr11:18447327-18447548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
170-461
               

               
Cow position:
               
chr11:39462793-39462494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
64, 219
               

               
Conread position:
               
170-502
               

               
Cow position:
               
chr11:17968451-17968754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
242, 64
               

               
Conread position:
               
170-502
               

               
Cow position:
               
chr11:19247031-19247373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
170-502
               

               
Cow position:
               
chr11:25620216-25620574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
60, 211
               

               
Conread position:
               
170-502
               

               
Cow position:
               
chr11:47193668-47193345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
83, 57
               

               
Conread position:
               
171-411
               

               
Cow position:
               
chr11:63866488-63866738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 179
               

               
Conread position:
               
171-502
               

               
Cow position:
               
chr11:8524945-8525288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 202
               

               
Conread position:
               
172-494
               

               
Cow position:
               
chr11:71009279-71008967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
172-500
               

               
Cow position:
               
chr11:28993576-28993904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 106
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr11:10095515-10095169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
66, 207
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr11:60301805-60302136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr11:73353895-73354232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
65, 200
               

               
Conread position:
               
173-310
               

               
Cow position:
               
chr11:53318706-53318568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
173-368
               

               
Cow position:
               
chr11:77013941-77013739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
64, 150
               

               
Conread position:
               
173-429
               

               
Cow position:
               
chr11:17083142-17083414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 218
               

               
Conread position:
               
173-437
               

               
Cow position:
               
chr11:18910713-18910988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
61, 144
               

               
Conread position:
               
173-472
               

               
Cow position:
               
chr11:33824743-33825037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 107
               

               
Conread position:
               
173-488
               

               
Cow position:
               
chr11:42296456-42296780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 198
               

               
Conread position:
               
173-488
               

               
Cow position:
               
chr11:58588498-58588185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
57, 43
               

               
Conread position:
               
173-494
               

               
Cow position:
               
chr11:77319583-77319244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 208
               

               
Conread position:
               
173-500
               

               
Cow position:
               
chr11:16232783-16233111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 55
               

               
Conread position:
               
173-500
               

               
Cow position:
               
chr11:36182862-36182512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
173-502
               

               
Cow position:
               
chr11:62620547-62620206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 221
               

               
Conread position:
               
173-502
               

               
Cow position:
               
chr11:69811052-69810729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
77, 64
               

               
Conread position:
               
173-506
               

               
Cow position:
               
chr11:68909682-68910032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
64, 162
               

               
Conread position:
               
173-511
               

               
Cow position:
               
chr11:77546567-77546229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
174-336
               

               
Cow position:
               
chr11:67948587-67948755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
174-477
               

               
Cow position:
               
chr11:18852073-18851767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 124
               

               
Conread position:
               
174-500
               

               
Cow position:
               
chr11:85723864-85723525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 230
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr11:15285454-15285792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
44, 201
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr11:30355216-30354892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 188
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr11:40818462-40818817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 224
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr11:55762027-55761703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
51, 204
               

               
Conread position:
               
175-308
               

               
Cow position:
               
chr11:48246907-48247047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
175-310
               

               
Cow position:
               
chr11:19508409-19508270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 12
               

               
Conread position:
               
175-459
               

               
Cow position:
               
chr11:70756643-70756348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 163
               

               
Conread position:
               
175-472
               

               
Cow position:
               
chr11:85703858-85703559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
63, 197
               

               
Conread position:
               
175-502
               

               
Cow position:
               
chr11:38236414-38236069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
62, 335
               

               
Conread position:
               
175-507
               

               
Cow position:
               
chr11:18572952-18572618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
62, 153
               

               
Conread position:
               
178-502
               

               
Cow position:
               
chr11:81611914-81611592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
180-475
               

               
Cow position:
               
chr11:62663078-62663370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
49, 15
               

               
Conread position:
               
181-501
               

               
Cow position:
               
chr11:81162284-81162606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 199
               

               
Conread position:
               
182-489
               

               
Cow position:
               
chr11:3393052-3393372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 116
               

               
Conread position:
               
190-502
               

               
Cow position:
               
chr11:10213431-10213739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
191-341
               

               
Cow position:
               
chr11:905241-905401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
191-347
               

               
Cow position:
               
chr11:84764175-84764012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 119
               

               
Conread position:
               
192-461
               

               
Cow position:
               
chr11:80537624-80537351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 186
               

               
Conread position:
               
192-500
               

               
Cow position:
               
chr11:49934591-49934916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
194-500
               

               
Cow position:
               
chr11:65409021-65409330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 61
               

               
Conread position:
               
194-507
               

               
Cow position:
               
chr11:38874266-38874588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
201-497
               

               
Cow position:
               
chr11:33286833-33287124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
92, 172
               

               
Conread position:
               
208-485
               

               
Cow position:
               
chr11:35775454-35775179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
209-430
               

               
Cow position:
               
chr11:63687500-63687717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
25, 154
               

               
Conread position:
               
212-505
               

               
Cow position:
               
chr11:53553327-53553059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
215-467
               

               
Cow position:
               
chr11:49872777-49873029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 94
               

               
Conread position:
               
215-494
               

               
Cow position:
               
chr11:53512195-53511913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
220-397
               

               
Cow position:
               
chr11:10363281-10363458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
73, 144
               

               
Conread position:
               
220-486
               

               
Cow position:
               
chr11:45435185-45434926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
220-491
               

               
Cow position:
               
chr11:56654659-56654382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
69, 16
               

               
Conread position:
               
220-500
               

               
Cow position:
               
chr11:2092445-2092164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
220-502
               

               
Cow position:
               
chr11:11232351-11232632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
220-502
               

               
Cow position:
               
chr11:66188211-66188498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
17, 224
               

               
Conread position:
               
220-502
               

               
Cow position:
               
chr11:75479920-75480204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
29, 6
               

               
Conread position:
               
220-507
               

               
Cow position:
               
chr11:45646491-45646779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 17
               

               
Conread position:
               
220-511
               

               
Cow position:
               
chr11:15017160-15016852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
221-423
               

               
Cow position:
               
chr11:24599284-24599487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
30, 38
               

               
Conread position:
               
221-423
               

               
Cow position:
               
chr11:64406334-64406128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
21, 156
               

               
Conread position:
               
222-502
               

               
Cow position:
               
chr11:44036824-44036541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
16, 77
               

               
Conread position:
               
224-355
               

               
Cow position:
               
chr11:65803769-65803903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
225-367
               

               
Cow position:
               
chr11:897774-897629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
225-502
               

               
Cow position:
               
chr11:33341044-33341323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 151
               

               
Conread position:
               
225-502
               

               
Cow position:
               
chr11:65157308-65157589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
225-502
               

               
Cow position:
               
chr11:80923223-80923501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 84
               

               
Conread position:
               
226-501
               

               
Cow position:
               
chr11:63433960-63434232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
226-502
               

               
Cow position:
               
chr11:31352452-31352747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
227-379
               

               
Cow position:
               
chr11:36328933-36329091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
227-448
               

               
Cow position:
               
chr11:14466388-14466610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
23, 149
               

               
Conread position:
               
227-472
               

               
Cow position:
               
chr11:67246884-67246646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
24, 88
               

               
Conread position:
               
227-483
               

               
Cow position:
               
chr11:46580452-46580198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
36, 42
               

               
Conread position:
               
227-483
               

               
Cow position:
               
chr11:50073036-50072793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
23, 148
               

               
Conread position:
               
227-500
               

               
Cow position:
               
chr11:44642193-44642462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
24, 31
               

               
Conread position:
               
227-500
               

               
Cow position:
               
chr11:85294340-85294072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
227-502
               

               
Cow position:
               
chr11:45897950-45898230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 152
               

               
Conread position:
               
227-502
               

               
Cow position:
               
chr11:70609897-70609609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
10, 189
               

               
Conread position:
               
227-507
               

               
Cow position:
               
chr11:18706726-18706999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
24, 94
               

               
Conread position:
               
228-509
               

               
Cow position:
               
chr11:39118855-39118578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 149
               

               
Conread position:
               
229-480
               

               
Cow position:
               
chr11:44575644-44575887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
30, 152
               

               
Conread position:
               
230-347
               

               
Cow position:
               
chr11:2900625-2900745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
230-408
               

               
Cow position:
               
chr11:28168327-28168505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 134
               

               
Conread position:
               
231-502
               

               
Cow position:
               
chr11:35873908-35874169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 148
               

               
Conread position:
               
232-369
               

               
Cow position:
               
chr11:76821995-76822133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 77
               

               
Conread position:
               
232-477
               

               
Cow position:
               
chr11:52983764-52983525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
232-494
               

               
Cow position:
               
chr11:41175857-41176118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
232-502
               

               
Cow position:
               
chr11:17860066-17860332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
232-502
               

               
Cow position:
               
chr11:43430362-43430628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
233-399
               

               
Cow position:
               
chr11:30484012-30483845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
18, 141
               

               
Conread position:
               
233-459
               

               
Cow position:
               
chr11:35803230-35803002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
10, 81
               

               
Conread position:
               
233-490
               

               
Cow position:
               
chr11:6245407-6245157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
233-490
               

               
Cow position:
               
chr11:39499448-39499194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 142
               

               
Conread position:
               
233-494
               

               
Cow position:
               
chr11:66424787-66425056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
233-502
               

               
Cow position:
               
chr11:32436426-32436154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
233-502
               

               
Cow position:
               
chr11:42016547-42016813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 79
               

               
Conread position:
               
233-502
               

               
Cow position:
               
chr11:64090005-64090261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
18, 9
               

               
Conread position:
               
233-506
               

               
Cow position:
               
chr11:1625132-1625399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
233-506
               

               
Cow position:
               
chr11:22499274-22499536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chr11:68913233-68912951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
17, 141
               

               
Conread position:
               
234-504
               

               
Cow position:
               
chr11:62226078-62225808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 110
               

               
Conread position:
               
235-332
               

               
Cow position:
               
chr11:34238480-34238580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
235-354
               

               
Cow position:
               
chr11:49255489-49255373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
235-355
               

               
Cow position:
               
chr11:30894913-30895036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
235-373
               

               
Cow position:
               
chr11:15382412-15382553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
235-379
               

               
Cow position:
               
chr11:34413249-34413397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
235-407
               

               
Cow position:
               
chr11:31410787-31410963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
235-408
               

               
Cow position:
               
chr11:8437603-8437770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 121
               

               
Conread position:
               
235-443
               

               
Cow position:
               
chr11:63999001-63999207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
16, 100
               

               
Conread position:
               
235-461
               

               
Cow position:
               
chr11:23251503-23251727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 80
               

               
Conread position:
               
235-461
               

               
Cow position:
               
chr11:38334614-38334391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
235-464
               

               
Cow position:
               
chr11:83397996-83397768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 141
               

               
Conread position:
               
235-465
               

               
Cow position:
               
chr11:65767290-65767058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 141
               

               
Conread position:
               
235-465
               

               
Cow position:
               
chr11:69978061-69977838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
16, 139
               

               
Conread position:
               
235-472
               

               
Cow position:
               
chr11:70836286-70836517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
235-477
               

               
Cow position:
               
chr11:70278022-70278260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 119
               

               
Conread position:
               
235-488
               

               
Cow position:
               
chr11:83230310-83230553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
16, 95
               

               
Conread position:
               
235-491
               

               
Cow position:
               
chr11:15772623-15772885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
235-500
               

               
Cow position:
               
chr11:34032108-34032378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
12, 148
               

               
Conread position:
               
235-501
               

               
Cow position:
               
chr11:63482339-63482603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr11:2907438-2907696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 37
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr11:19591904-19592172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 108
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr11:46747770-46748041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
14, 132
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr11:50152723-50152993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr11:55052962-55052708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
16, 122
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr11:67747370-67747107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr11:77758670-77758935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
14, 101
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr11:79728577-79728847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
13, 138
               

               
Conread position:
               
235-507
               

               
Cow position:
               
chr11:65762497-65762782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 148
               

               
Conread position:
               
235-509
               

               
Cow position:
               
chr11:44222976-44222709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
235-511
               

               
Cow position:
               
chr11:20602317-20602046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
236-342
               

               
Cow position:
               
chr11:8107533-8107425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
236-353
               

               
Cow position:
               
chr11:71022090-71021970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
236-360
               

               
Cow position:
               
chr11:3248617-3248746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
236-361
               

               
Cow position:
               
chr11:47882893-47882765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
236-363
               

               
Cow position:
               
chr11:21885922-21885793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
236-369
               

               
Cow position:
               
chr11:54573251-54573117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
236-377
               

               
Cow position:
               
chr11:1932400-1932546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
236-380
               

               
Cow position:
               
chr11:19606667-19606519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
236-382
               

               
Cow position:
               
chr11:48248126-48248275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
236-388
               

               
Cow position:
               
chr11:38211735-38211581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
236-405
               

               
Cow position:
               
chr11:29699610-29699779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
236-406
               

               
Cow position:
               
chr11:22747241-22747408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
236-408
               

               
Cow position:
               
chr11:79018969-79019140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 141
               

               
Conread position:
               
236-420
               

               
Cow position:
               
chr11:80564382-80564198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 142
               

               
Conread position:
               
236-423
               

               
Cow position:
               
chr11:33409172-33409355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
15, 124
               

               
Conread position:
               
236-424
               

               
Cow position:
               
chr11:42159967-42160159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
236-429
               

               
Cow position:
               
chr11:32690881-32691067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
15, 122
               

               
Conread position:
               
236-437
               

               
Cow position:
               
chr11:26845505-26845706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
15, 6
               

               
Conread position:
               
236-445
               

               
Cow position:
               
chr11:375549-375335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 143
               

               
Conread position:
               
236-455
               

               
Cow position:
               
chr11:41293728-41293948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
236-457
               

               
Cow position:
               
chr11:77705840-77705624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
236-461
               

               
Cow position:
               
chr11:70206408-70206188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
236-479
               

               
Cow position:
               
chr11:70251008-70250772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 128
               

               
Conread position:
               
236-483
               

               
Cow position:
               
chr11:13075722-13075948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
236-483
               

               
Cow position:
               
chr11:62150804-62151042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
236-485
               

               
Cow position:
               
chr11:2575814-2576063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
15, 139
               

               
Conread position:
               
236-489
               

               
Cow position:
               
chr11:43898228-43897977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
236-489
               

               
Cow position:
               
chr11:59702580-59702323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 147
               

               
Conread position:
               
236-489
               

               
Cow position:
               
chr11:80556309-80556057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
236-489
               

               
Cow position:
               
chr11:81135078-81135325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
15, 124
               

               
Conread position:
               
236-493
               

               
Cow position:
               
chr11:34113355-34113098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
14, 126
               

               
Conread position:
               
236-494
               

               
Cow position:
               
chr11:1071001-1071261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
17, 140
               

               
Conread position:
               
236-494
               

               
Cow position:
               
chr11:25387158-25386895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 148
               

               
Conread position:
               
236-494
               

               
Cow position:
               
chr11:35153735-35153993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 139
               

               
Conread position:
               
236-500
               

               
Cow position:
               
chr11:48272290-48272022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 147
               

               
Conread position:
               
236-500
               

               
Cow position:
               
chr11:76114732-76114479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:1849086-1849340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:11125752-11125485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
15, 6
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:20761932-20761669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 60
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:21844049-21844310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:23586728-23586460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 143
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:27404985-27405243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:28644177-28643904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:30192268-30191995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 143
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:34121288-34121023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 139
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:34646679-34646414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 140
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:35580350-35580080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:35684411-35684672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 125
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:40573246-40573511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
16, 78
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:44234445-44234176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 130
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:52380782-52381049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 146
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:68206752-68207016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:73924472-73924737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 141
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr11:83066577-83066320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
236-503
               

               
Cow position:
               
chr11:59873018-59872755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
236-506
               

               
Cow position:
               
chr11:30955090-30954817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 138
               

               
Conread position:
               
236-506
               

               
Cow position:
               
chr11:69076000-69075729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
236-507
               

               
Cow position:
               
chr11:29946824-29947112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
15, 244
               

               
Conread position:
               
236-509
               

               
Cow position:
               
chr11:46746727-46746443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 212
               

               
Conread position:
               
236-511
               

               
Cow position:
               
chr11:11558261-11557979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
236-511
               

               
Cow position:
               
chr11:15339152-15338885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
237-357
               

               
Cow position:
               
chr11:3896612-3896733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
237-389
               

               
Cow position:
               
chr11:11533843-11533993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
237-465
               

               
Cow position:
               
chr11:47772301-47772531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 139
               

               
Conread position:
               
237-488
               

               
Cow position:
               
chr11:17493571-17493316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
56, 141
               

               
Conread position:
               
237-488
               

               
Cow position:
               
chr11:56187697-56187457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
237-500
               

               
Cow position:
               
chr11:34829697-34829955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
237-502
               

               
Cow position:
               
chr11:7590277-7590016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
237-502
               

               
Cow position:
               
chr11:16842899-16843180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 5
               

               
Conread position:
               
237-502
               

               
Cow position:
               
chr11:44636665-44636935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 147
               

               
Conread position:
               
237-502
               

               
Cow position:
               
chr11:69119382-69119125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 147
               

               
Conread position:
               
237-511
               

               
Cow position:
               
chr11:48496504-48496774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 134
               

               
Conread position:
               
238-378
               

               
Cow position:
               
chr11:82730910-82731054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
238-383
               

               
Cow position:
               
chr11:72884509-72884654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
238-418
               

               
Cow position:
               
chr11:67312868-67312680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
238-435
               

               
Cow position:
               
chr11:30494081-30493889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
238-449
               

               
Cow position:
               
chr11:33345533-33345320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
238-451
               

               
Cow position:
               
chr11:47837407-47837188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
13, 95
               

               
Conread position:
               
238-461
               

               
Cow position:
               
chr11:7460527-7460750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 147
               

               
Conread position:
               
238-462
               

               
Cow position:
               
chr11:261180-261399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
238-462
               

               
Cow position:
               
chr11:52690434-52690659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 137
               

               
Conread position:
               
238-464
               

               
Cow position:
               
chr11:69307601-69307362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 128
               

               
Conread position:
               
238-475
               

               
Cow position:
               
chr11:86720330-86720561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
238-481
               

               
Cow position:
               
chr11:6633798-6633556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
12, 195
               

               
Conread position:
               
238-487
               

               
Cow position:
               
chr11:66572410-66572663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
238-489
               

               
Cow position:
               
chr11:63917389-63917628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
238-490
               

               
Cow position:
               
chr11:13500103-13499848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
238-490
               

               
Cow position:
               
chr11:16906963-16907207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
13, 71
               

               
Conread position:
               
238-490
               

               
Cow position:
               
chr11:26144008-26144263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
11, 123
               

               
Conread position:
               
238-491
               

               
Cow position:
               
chr11:8544930-8545178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
10, 84
               

               
Conread position:
               
238-491
               

               
Cow position:
               
chr11:40478765-40479020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 129
               

               
Conread position:
               
238-491
               

               
Cow position:
               
chr11:84385551-84385803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr11:6233792-6234048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 139
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr11:30209735-30209989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr11:37804466-37804723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 141
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr11:70086420-70086156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
238-500
               

               
Cow position:
               
chr11:3833276-3833528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
238-500
               

               
Cow position:
               
chr11:7924506-7924761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 59
               

               
Conread position:
               
238-500
               

               
Cow position:
               
chr11:23137966-23138237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
13, 95
               

               
Conread position:
               
238-500
               

               
Cow position:
               
chr11:23232432-23232686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
238-500
               

               
Cow position:
               
chr11:33753824-33754080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
238-501
               

               
Cow position:
               
chr11:34144837-34145090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:377554-377823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 138
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:1362380-1362655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:3234163-3233906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
12, 120
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:33311065-33310792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 141
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:33414324-33414059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
11, 136
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:36238865-36238606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:36987037-36986787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
13, 118
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:42043909-42044165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:55333997-55333734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
11, 138
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:61454429-61454709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:71492774-71493035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:77750685-77750946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:80530446-80530188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr11:80761290-80761558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 105
               

               
Conread position:
               
238-503
               

               
Cow position:
               
chr11:1157731-1157466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
238-503
               

               
Cow position:
               
chr11:61958657-61958925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
55, 136
               

               
Conread position:
               
238-506
               

               
Cow position:
               
chr11:36799220-36799483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
238-507
               

               
Cow position:
               
chr11:4207398-4207128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
55, 145
               

               
Conread position:
               
238-507
               

               
Cow position:
               
chr11:4662960-4663224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
59, 100
               

               
Conread position:
               
238-507
               

               
Cow position:
               
chr11:71501045-71501317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
55, 138
               

               
Conread position:
               
238-507
               

               
Cow position:
               
chr11:71868515-71868789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
11, 136
               

               
Conread position:
               
238-507
               

               
Cow position:
               
chr11:82107814-82108074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
238-509
               

               
Cow position:
               
chr11:48474791-48474516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
13, 136
               

               
Conread position:
               
238-509
               

               
Cow position:
               
chr11:64638438-64638715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
238-509
               

               
Cow position:
               
chr11:73512356-73512615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
238-511
               

               
Cow position:
               
chr11:2084231-2083954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
238-511
               

               
Cow position:
               
chr11:8988144-8988414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
55, 127
               

               
Conread position:
               
238-511
               

               
Cow position:
               
chr11:23271916-23272189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
239-368
               

               
Cow position:
               
chr11:17321737-17321602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
239-408
               

               
Cow position:
               
chr11:53279628-53279795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
12, 70
               

               
Conread position:
               
239-472
               

               
Cow position:
               
chr11:63435607-63435371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
12, 73
               

               
Conread position:
               
239-487
               

               
Cow position:
               
chr11:56518225-56518471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
239-491
               

               
Cow position:
               
chr11:87155606-87155352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 84
               

               
Conread position:
               
239-501
               

               
Cow position:
               
chr11:8428598-8428321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
20, 122
               

               
Conread position:
               
239-502
               

               
Cow position:
               
chr11:27913371-27913096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
239-502
               

               
Cow position:
               
chr11:34963156-34962883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 65
               

               
Conread position:
               
239-502
               

               
Cow position:
               
chr11:50778454-50778196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 108
               

               
Conread position:
               
239-502
               

               
Cow position:
               
chr11:62155725-62155447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
239-503
               

               
Cow position:
               
chr11:70483765-70484037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
239-507
               

               
Cow position:
               
chr11:23128453-23128725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 135
               

               
Conread position:
               
240-477
               

               
Cow position:
               
chr11:5201566-5201801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
11, 136
               

               
Conread position:
               
240-494
               

               
Cow position:
               
chr11:5549-5299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
11, 125
               

               
Conread position:
               
240-502
               

               
Cow position:
               
chr11:9221646-9221901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
241-439
               

               
Cow position:
               
chr11:31875176-31874979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 132
               

               
Conread position:
               
241-507
               

               
Cow position:
               
chr11:70620129-70619869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
10, 142
               

               
Conread position:
               
242-406
               

               
Cow position:
               
chr11:72292636-72292464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
242-449
               

               
Cow position:
               
chr11:36658739-36658944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
9, 72
               

               
Conread position:
               
242-491
               

               
Cow position:
               
chr11:32693401-32693637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
218, 46
               

               
Conread position:
               
242-500
               

               
Cow position:
               
chr11:63909583-63909833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
242-500
               

               
Cow position:
               
chr11:82940541-82940797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
9, 73
               

               
Conread position:
               
242-502
               

               
Cow position:
               
chr11:27932364-27932091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
54, 175
               

               
Conread position:
               
242-502
               

               
Cow position:
               
chr11:47545214-47544953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 63
               

               
Conread position:
               
242-502
               

               
Cow position:
               
chr11:63847930-63847675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 131
               

               
Conread position:
               
242-506
               

               
Cow position:
               
chr11:21894079-21894334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
220, 51
               

               
Conread position:
               
243-502
               

               
Cow position:
               
chr11:952351-952094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
8, 115
               

               
Conread position:
               
249-446
               

               
Cow position:
               
chr11:84490424-84490610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
44, 69
               

               
Conread position:
               
249-502
               

               
Cow position:
               
chr11:5031700-5031952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
250-502
               

               
Cow position:
               
chr11:72375606-72375863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 7
               

               
Conread position:
               
251-450
               

               
Cow position:
               
chr11:6194279-6194081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
42, 116
               

               
Conread position:
               
253-501
               

               
Cow position:
               
chr11:82796217-82796462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 112
               

               
Conread position:
               
254-485
               

               
Cow position:
               
chr11:65444772-65445007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
254-503
               

               
Cow position:
               
chr11:30911933-30912168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
236, 109
               

               
Conread position:
               
255-432
               

               
Cow position:
               
chr11:75965582-75965756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
256-502
               

               
Cow position:
               
chr11:10620259-10620500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
37, 121
               

               
Conread position:
               
256-502
               

               
Cow position:
               
chr11:60143233-60143476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 134
               

               
Conread position:
               
256-502
               

               
Cow position:
               
chr11:70273375-70273126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 116
               

               
Conread position:
               
256-509
               

               
Cow position:
               
chr11:67550309-67550556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
37, 101
               

               
Conread position:
               
257-374
               

               
Cow position:
               
chr11:36914659-36914778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
257-431
               

               
Cow position:
               
chr11:11044965-11045139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 59
               

               
Conread position:
               
257-488
               

               
Cow position:
               
chr11:36286763-36286534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
257-509
               

               
Cow position:
               
chr11:40258344-40258593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
258-491
               

               
Cow position:
               
chr11:57724758-57724991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 109
               

               
Conread position:
               
258-502
               

               
Cow position:
               
chr11:24937732-24937487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
258-502
               

               
Cow position:
               
chr11:45872244-45872497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
35, 95
               

               
Conread position:
               
259-494
               

               
Cow position:
               
chr11:2788459-2788210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
260-502
               

               
Cow position:
               
chr11:38670747-38670505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 60
               

               
Conread position:
               
264-502
               

               
Cow position:
               
chr11:83323624-83323398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 99
               

               
Conread position:
               
265-488
               

               
Cow position:
               
chr11:11647132-11646907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 87
               

               
Conread position:
               
267-413
               

               
Cow position:
               
chr11:54218772-54218631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
26, 105
               

               
Conread position:
               
267-461
               

               
Cow position:
               
chr11:31337445-31337247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 126
               

               
Conread position:
               
267-494
               

               
Cow position:
               
chr11:20684514-20684745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
25, 106
               

               
Conread position:
               
267-494
               

               
Cow position:
               
chr11:31525936-31525698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
27, 131
               

               
Conread position:
               
267-494
               

               
Cow position:
               
chr11:33349643-33349867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 107
               

               
Conread position:
               
267-506
               

               
Cow position:
               
chr11:29916599-29916353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 176
               

               
Conread position:
               
268-408
               

               
Cow position:
               
chr11:37369732-37369600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
268-500
               

               
Cow position:
               
chr11:18340984-18341211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
268-511
               

               
Cow position:
               
chr11:4732399-4732153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
25, 106
               

               
Conread position:
               
269-466
               

               
Cow position:
               
chr11:21497578-21497381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
24, 103
               

               
Conread position:
               
269-491
               

               
Cow position:
               
chr11:33293723-33293953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 135
               

               
Conread position:
               
269-494
               

               
Cow position:
               
chr11:9463891-9463663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
269-494
               

               
Cow position:
               
chr11:66733885-66733670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 105
               

               
Conread position:
               
272-507
               

               
Cow position:
               
chr11:30120609-30120847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 55
               

               
Conread position:
               
275-502
               

               
Cow position:
               
chr11:30597043-30596808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
276-494
               

               
Cow position:
               
chr11:3726337-3726117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
276-494
               

               
Cow position:
               
chr11:15504161-15503935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
276-502
               

               
Cow position:
               
chr11:4323407-4323178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 98
               

               
Conread position:
               
276-511
               

               
Cow position:
               
chr11:26483760-26483525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
279-502
               

               
Cow position:
               
chr11:6154451-6154237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
214, 11
               

               
Conread position:
               
279-511
               

               
Cow position:
               
chr11:29004479-29004246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
290-500
               

               
Cow position:
               
chr11:8936462-8936660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
203, 16
               

               
Conread position:
               
291-501
               

               
Cow position:
               
chr11:14094388-14094597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
72, 83
               

               
Conread position:
               
291-502
               

               
Cow position:
               
chr11:18591402-18591609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
121, 80
               

               
Conread position:
               
291-502
               

               
Cow position:
               
chr11:48042001-48042217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
291-503
               

               
Cow position:
               
chr11:18210316-18210524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
107, 64
               

               
Conread position:
               
291-503
               

               
Cow position:
               
chr11:57170798-57171005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
117, 75
               

               
Conread position:
               
291-507
               

               
Cow position:
               
chr11:8339374-8339590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
117, 74
               

               
Conread position:
               
291-507
               

               
Cow position:
               
chr11:65431086-65430876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
121, 48
               

               
Conread position:
               
291-509
               

               
Cow position:
               
chr11:2811698-2811915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
120, 93
               

               
Conread position:
               
294-494
               

               
Cow position:
               
chr11:85986143-85986339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
113, 72
               

               
Conread position:
               
295-488
               

               
Cow position:
               
chr11:27386311-27386508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
113, 78
               

               
Conread position:
               
295-489
               

               
Cow position:
               
chr11:42792945-42793136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
115, 75
               

               
Conread position:
               
295-500
               

               
Cow position:
               
chr11:67136403-67136615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
113, 11
               

               
Conread position:
               
295-502
               

               
Cow position:
               
chr11:75355648-75355432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
296-500
               

               
Cow position:
               
chr11:955394-955190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
111, 76
               

               
Conread position:
               
298-507
               

               
Cow position:
               
chr11:81174909-81174704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
110, 20
               

               
Conread position:
               
303-500
               

               
Cow position:
               
chr11:50197413-50197611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 71
               

               
Conread position:
               
303-502
               

               
Cow position:
               
chr11:16251224-16251423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
105, 73
               

               
Conread position:
               
304-502
               

               
Cow position:
               
chr11:33468729-33468535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 71
               

               
Conread position:
               
311-502
               

               
Cow position:
               
chr11:4412010-4412192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 46
               

               
Conread position:
               
315-502
               

               
Cow position:
               
chr11:25320063-25319876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
319-502
               

               
Cow position:
               
chr11:15525971-15525776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
319-509
               

               
Cow position:
               
chr11:59155873-59156063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
83, 60
               

               
Conread position:
               
324-477
               

               
Cow position:
               
chr11:70740978-70741127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 34
               

               
Conread position:
               
324-502
               

               
Cow position:
               
chr11:21830349-21830527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
78, 168
               

               
Conread position:
               
327-494
               

               
Cow position:
               
chr11:63516823-63516658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
327-502
               

               
Cow position:
               
chr11:8105781-8105604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
327-502
               

               
Cow position:
               
chr11:47586354-47586523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 32
               

               
Conread position:
               
327-502
               

               
Cow position:
               
chr11:71455788-71455613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
138, 24
               

               
Conread position:
               
328-500
               

               
Cow position:
               
chr11:81614645-81614814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
124, 27
               

               
Conread position:
               
337-501
               

               
Cow position:
               
chr11:30753492-30753648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
339-502
               

               
Cow position:
               
chr11:47851011-47850849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
341-507
               

               
Cow position:
               
chr11:43914197-43914032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
353-489
               

               
Cow position:
               
chr11:35258128-35258264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
360-502
               

               
Cow position:
               
chr11:63520741-63520598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
362-502
               

               
Cow position:
               
chr11:74929749-74929605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
374-502
               

               
Cow position:
               
chr11:19508248-19508118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
376-502
               

               
Cow position:
               
chr11:25165392-25165265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 6
               

               
Conread position:
               
379-477
               

               
Cow position:
               
chr11:75918291-75918191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
381-502
               

               
Cow position:
               
chr11:32609949-32609825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               
Show alignments to all cow chromosomes.