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Cow genome map

           
Conread name:
           
Pla1-C0000039_N19
        

               
Conread position:
               
80-488
               

               
Cow position:
               
chr21:12154472-12154056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
80-500
               

               
Cow position:
               
chr21:10633307-10633735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
94, 32
               

               
Conread position:
               
147-362
               

               
Cow position:
               
chr21:24875628-24875394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
93, 24
               

               
Conread position:
               
148-500
               

               
Cow position:
               
chr21:30231420-30231792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
86, 249
               

               
Conread position:
               
153-321
               

               
Cow position:
               
chr21:9710481-9710645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
86, 61
               

               
Conread position:
               
153-441
               

               
Cow position:
               
chr21:734841-734562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
73, 53
               

               
Conread position:
               
153-449
               

               
Cow position:
               
chr21:46599629-46599320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
88, 238
               

               
Conread position:
               
154-510
               

               
Cow position:
               
chr21:2679802-2679454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 85
               

               
Conread position:
               
155-291
               

               
Cow position:
               
chr21:12074910-12075045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 18
               

               
Conread position:
               
155-313
               

               
Cow position:
               
chr21:11678054-11678221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
155-337
               

               
Cow position:
               
chr21:11182817-11182620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
86, 16
               

               
Conread position:
               
155-462
               

               
Cow position:
               
chr21:8349591-8349273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
41, 165
               

               
Conread position:
               
155-469
               

               
Cow position:
               
chr21:8426712-8426379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 220
               

               
Conread position:
               
157-461
               

               
Cow position:
               
chr21:5464997-5464693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
157-493
               

               
Cow position:
               
chr21:23673011-23672665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
157-511
               

               
Cow position:
               
chr21:6834317-6833941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
69, 221
               

               
Conread position:
               
158-494
               

               
Cow position:
               
chr21:20262081-20262420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
158-502
               

               
Cow position:
               
chr21:957935-957576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 171
               

               
Conread position:
               
159-342
               

               
Cow position:
               
chr21:30658126-30657932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
160-346
               

               
Cow position:
               
chr21:8506284-8506488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 13
               

               
Conread position:
               
160-346
               

               
Cow position:
               
chr21:8509172-8509376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 13
               

               
Conread position:
               
160-393
               

               
Cow position:
               
chr21:28907286-28907528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
160-435
               

               
Cow position:
               
chr21:28030542-28030260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
160-502
               

               
Cow position:
               
chr21:42135355-42135716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 214
               

               
Conread position:
               
161-430
               

               
Cow position:
               
chr21:37235631-37235362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 68
               

               
Conread position:
               
161-465
               

               
Cow position:
               
chr21:28919269-28919581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
77, 7
               

               
Conread position:
               
161-483
               

               
Cow position:
               
chr21:46551862-46552182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
39, 49
               

               
Conread position:
               
161-500
               

               
Cow position:
               
chr21:10264297-10263942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
161-500
               

               
Cow position:
               
chr21:38901026-38900684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
77, 130
               

               
Conread position:
               
161-502
               

               
Cow position:
               
chr21:1059332-1058984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
29, 165
               

               
Conread position:
               
161-507
               

               
Cow position:
               
chr21:12461707-12462073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
161-509
               

               
Cow position:
               
chr21:28244729-28244366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
78, 10
               

               
Conread position:
               
163-416
               

               
Cow position:
               
chr21:21616037-21615765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
163-443
               

               
Cow position:
               
chr21:12354441-12354730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
30, 144
               

               
Conread position:
               
163-483
               

               
Cow position:
               
chr21:45356076-45355760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
89, 65
               

               
Conread position:
               
163-484
               

               
Cow position:
               
chr21:5898148-5898476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
163-500
               

               
Cow position:
               
chr21:27810652-27810314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
156, 11
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr21:802063-802391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr21:23587133-23586784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 103
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr21:27229543-27229891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 10
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr21:33982553-33982901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 159
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr21:37480225-37479864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
71, 238
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr21:38449191-38449544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
74, 160
               

               
Conread position:
               
163-507
               

               
Cow position:
               
chr21:10673371-10673028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
73, 120
               

               
Conread position:
               
163-509
               

               
Cow position:
               
chr21:33996990-33997331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 10
               

               
Conread position:
               
165-465
               

               
Cow position:
               
chr21:298003-297695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 218
               

               
Conread position:
               
165-506
               

               
Cow position:
               
chr21:4400052-4399697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
56, 196
               

               
Conread position:
               
166-288
               

               
Cow position:
               
chr21:11298809-11298685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
166-304
               

               
Cow position:
               
chr21:25536359-25536225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
166-311
               

               
Cow position:
               
chr21:36817170-36817030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
166-332
               

               
Cow position:
               
chr21:46972907-46973078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
166-333
               

               
Cow position:
               
chr21:236147-235976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
166-347
               

               
Cow position:
               
chr21:15012689-15012496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
166-369
               

               
Cow position:
               
chr21:16498773-16498554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 157
               

               
Conread position:
               
166-371
               

               
Cow position:
               
chr21:22851173-22850955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
82, 164
               

               
Conread position:
               
166-375
               

               
Cow position:
               
chr21:46451714-46451923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
85, 69
               

               
Conread position:
               
166-381
               

               
Cow position:
               
chr21:6851423-6851193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
166-406
               

               
Cow position:
               
chr21:19868704-19868954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
73, 200
               

               
Conread position:
               
166-436
               

               
Cow position:
               
chr21:14126530-14126259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 164
               

               
Conread position:
               
166-443
               

               
Cow position:
               
chr21:42209387-42209667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
60, 83
               

               
Conread position:
               
166-444
               

               
Cow position:
               
chr21:17983229-17982939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
95, 14
               

               
Conread position:
               
166-447
               

               
Cow position:
               
chr21:45835132-45835442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 232
               

               
Conread position:
               
166-461
               

               
Cow position:
               
chr21:674926-674638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 210
               

               
Conread position:
               
166-466
               

               
Cow position:
               
chr21:3254391-3254092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
62, 74
               

               
Conread position:
               
166-468
               

               
Cow position:
               
chr21:742532-742224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
66, 161
               

               
Conread position:
               
166-471
               

               
Cow position:
               
chr21:12339875-12339575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
74, 26
               

               
Conread position:
               
166-472
               

               
Cow position:
               
chr21:46607354-46607648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
129, 62
               

               
Conread position:
               
166-474
               

               
Cow position:
               
chr21:15543981-15544285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
166-476
               

               
Cow position:
               
chr21:44214369-44214055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 145
               

               
Conread position:
               
166-477
               

               
Cow position:
               
chr21:33413839-33414155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 178
               

               
Conread position:
               
166-477
               

               
Cow position:
               
chr21:47719047-47719369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
166-487
               

               
Cow position:
               
chr21:18941595-18941910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 62
               

               
Conread position:
               
166-487
               

               
Cow position:
               
chr21:30222600-30222264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 224
               

               
Conread position:
               
166-489
               

               
Cow position:
               
chr21:24598901-24598579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
166-494
               

               
Cow position:
               
chr21:6998199-6997851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
56, 165
               

               
Conread position:
               
166-494
               

               
Cow position:
               
chr21:44658819-44658495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
58, 154
               

               
Conread position:
               
166-500
               

               
Cow position:
               
chr21:21181416-21181082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
127, 59
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr21:641842-641490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 207
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr21:3236761-3236431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
75, 114
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr21:20418448-20418781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
127, 75
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr21:25764874-25764542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 60
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr21:31662705-31662368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
85, 11
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr21:34654328-34653981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 183
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr21:34740084-34739750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr21:39403270-39403631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
75, 353
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr21:48233918-48234255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
166-503
               

               
Cow position:
               
chr21:30592056-30592401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 165
               

               
Conread position:
               
166-506
               

               
Cow position:
               
chr21:25800634-25800296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
85, 24
               

               
Conread position:
               
166-507
               

               
Cow position:
               
chr21:12301272-12301607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
127, 73
               

               
Conread position:
               
166-507
               

               
Cow position:
               
chr21:17428735-17428403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 62
               

               
Conread position:
               
166-507
               

               
Cow position:
               
chr21:22352998-22353330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
91, 62
               

               
Conread position:
               
166-507
               

               
Cow position:
               
chr21:30848690-30849048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
74, 218
               

               
Conread position:
               
166-507
               

               
Cow position:
               
chr21:41590308-41590660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 226
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:27521084-27521438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:38121337-38120998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
168-487
               

               
Cow position:
               
chr21:9939952-9940274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
82, 57
               

               
Conread position:
               
168-502
               

               
Cow position:
               
chr21:31691728-31691386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 27
               

               
Conread position:
               
168-502
               

               
Cow position:
               
chr21:32559115-32559451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 201
               

               
Conread position:
               
168-507
               

               
Cow position:
               
chr21:15911634-15911298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
168-507
               

               
Cow position:
               
chr21:34010140-34010499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
60, 120
               

               
Conread position:
               
169-408
               

               
Cow position:
               
chr21:7169942-7169687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 206
               

               
Conread position:
               
169-425
               

               
Cow position:
               
chr21:12104608-12104350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 210
               

               
Conread position:
               
169-439
               

               
Cow position:
               
chr21:37255812-37256066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
169-462
               

               
Cow position:
               
chr21:33727225-33727520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 59
               

               
Conread position:
               
169-488
               

               
Cow position:
               
chr21:37014170-37014484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
72, 92
               

               
Conread position:
               
169-494
               

               
Cow position:
               
chr21:13755017-13754706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
123, 17
               

               
Conread position:
               
169-500
               

               
Cow position:
               
chr21:82314-81986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 187
               

               
Conread position:
               
169-502
               

               
Cow position:
               
chr21:8207012-8206676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 107
               

               
Conread position:
               
169-507
               

               
Cow position:
               
chr21:643575-643230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
169-511
               

               
Cow position:
               
chr21:11644711-11645076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 232
               

               
Conread position:
               
170-378
               

               
Cow position:
               
chr21:44724122-44724343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
170-464
               

               
Cow position:
               
chr21:23568479-23568165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 309
               

               
Conread position:
               
170-466
               

               
Cow position:
               
chr21:29014663-29014969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
69, 154
               

               
Conread position:
               
170-502
               

               
Cow position:
               
chr21:6909635-6909976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
57, 154
               

               
Conread position:
               
170-502
               

               
Cow position:
               
chr21:17874936-17875288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 212
               

               
Conread position:
               
170-502
               

               
Cow position:
               
chr21:22718529-22718873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 43
               

               
Conread position:
               
170-502
               

               
Cow position:
               
chr21:40134400-40134064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
64, 194
               

               
Conread position:
               
170-511
               

               
Cow position:
               
chr21:7673367-7673025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 133
               

               
Conread position:
               
171-406
               

               
Cow position:
               
chr21:41287543-41287792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 213
               

               
Conread position:
               
171-491
               

               
Cow position:
               
chr21:41107523-41107846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
34, 197
               

               
Conread position:
               
171-507
               

               
Cow position:
               
chr21:7824937-7825279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
63, 167
               

               
Conread position:
               
172-494
               

               
Cow position:
               
chr21:14760809-14760487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 37
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr21:3360764-3361107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
64, 185
               

               
Conread position:
               
172-511
               

               
Cow position:
               
chr21:10561333-10561691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
61, 208
               

               
Conread position:
               
173-430
               

               
Cow position:
               
chr21:71837-71563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
59, 111
               

               
Conread position:
               
173-439
               

               
Cow position:
               
chr21:18064675-18064945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 108
               

               
Conread position:
               
173-454
               

               
Cow position:
               
chr21:21907190-21907476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 131
               

               
Conread position:
               
173-465
               

               
Cow position:
               
chr21:35900067-35899786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
42, 19
               

               
Conread position:
               
173-477
               

               
Cow position:
               
chr21:1511537-1511221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 130
               

               
Conread position:
               
173-488
               

               
Cow position:
               
chr21:45970928-45971254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
74, 154
               

               
Conread position:
               
173-500
               

               
Cow position:
               
chr21:4281632-4281966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
66, 214
               

               
Conread position:
               
173-502
               

               
Cow position:
               
chr21:8351043-8351399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
62, 304
               

               
Conread position:
               
173-502
               

               
Cow position:
               
chr21:27863268-27863612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
64, 215
               

               
Conread position:
               
173-502
               

               
Cow position:
               
chr21:40168393-40168726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
120, 200
               

               
Conread position:
               
173-502
               

               
Cow position:
               
chr21:44565478-44565803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
173-509
               

               
Cow position:
               
chr21:5427178-5426834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
63, 192
               

               
Conread position:
               
174-491
               

               
Cow position:
               
chr21:32339495-32339822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
87, 185
               

               
Conread position:
               
174-500
               

               
Cow position:
               
chr21:29978515-29978850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
175-472
               

               
Cow position:
               
chr21:7394618-7394316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
175-507
               

               
Cow position:
               
chr21:22861241-22860898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 119
               

               
Conread position:
               
176-507
               

               
Cow position:
               
chr21:12801518-12801850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
176-507
               

               
Cow position:
               
chr21:28810027-28810370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
53, 110
               

               
Conread position:
               
177-382
               

               
Cow position:
               
chr21:20163954-20163731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
55, 28
               

               
Conread position:
               
177-500
               

               
Cow position:
               
chr21:28211424-28211107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
185-367
               

               
Cow position:
               
chr21:48083004-48083188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 125
               

               
Conread position:
               
191-422
               

               
Cow position:
               
chr21:13036691-13036915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
193-494
               

               
Cow position:
               
chr21:23800916-23801214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
193-502
               

               
Cow position:
               
chr21:13089260-13089565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
199-486
               

               
Cow position:
               
chr21:10410429-10410139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
200-502
               

               
Cow position:
               
chr21:18041654-18041944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
200-506
               

               
Cow position:
               
chr21:27145785-27146090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
35, 76
               

               
Conread position:
               
202-468
               

               
Cow position:
               
chr21:22014394-22014126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
208-502
               

               
Cow position:
               
chr21:18155368-18155666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
82, 165
               

               
Conread position:
               
218-509
               

               
Cow position:
               
chr21:30606896-30607197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
220-475
               

               
Cow position:
               
chr21:16570085-16569833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
220-502
               

               
Cow position:
               
chr21:3585180-3585456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
17, 156
               

               
Conread position:
               
220-502
               

               
Cow position:
               
chr21:45329762-45330044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
19, 115
               

               
Conread position:
               
220-507
               

               
Cow position:
               
chr21:20153139-20152844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
73, 6
               

               
Conread position:
               
220-507
               

               
Cow position:
               
chr21:29213973-29214252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 145
               

               
Conread position:
               
221-501
               

               
Cow position:
               
chr21:20260135-20260416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 25
               

               
Conread position:
               
221-507
               

               
Cow position:
               
chr21:34151767-34151477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
222-506
               

               
Cow position:
               
chr21:49699856-49700138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
224-502
               

               
Cow position:
               
chr21:45920875-45921155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 150
               

               
Conread position:
               
225-457
               

               
Cow position:
               
chr21:41522234-41522457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
225-502
               

               
Cow position:
               
chr21:36297675-36297394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 152
               

               
Conread position:
               
226-500
               

               
Cow position:
               
chr21:17193568-17193854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
22, 151
               

               
Conread position:
               
227-355
               

               
Cow position:
               
chr21:42465968-42465829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
227-365
               

               
Cow position:
               
chr21:31147754-31147895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
9, 119
               

               
Conread position:
               
227-454
               

               
Cow position:
               
chr21:19514044-19513818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
31, 5
               

               
Conread position:
               
227-461
               

               
Cow position:
               
chr21:47363554-47363792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
24, 149
               

               
Conread position:
               
227-500
               

               
Cow position:
               
chr21:19258999-19258735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
227-502
               

               
Cow position:
               
chr21:13584881-13585165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 105
               

               
Conread position:
               
227-502
               

               
Cow position:
               
chr21:22121683-22121426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
15, 5
               

               
Conread position:
               
227-502
               

               
Cow position:
               
chr21:42022455-42022194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 136
               

               
Conread position:
               
227-506
               

               
Cow position:
               
chr21:37344921-37345200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 116
               

               
Conread position:
               
228-502
               

               
Cow position:
               
chr21:11360219-11359945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
9, 152
               

               
Conread position:
               
228-502
               

               
Cow position:
               
chr21:30990108-30990366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
23, 88
               

               
Conread position:
               
230-502
               

               
Cow position:
               
chr21:39401771-39401498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
230-503
               

               
Cow position:
               
chr21:1591731-1591453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
12, 153
               

               
Conread position:
               
231-501
               

               
Cow position:
               
chr21:47215019-47215275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
10, 78
               

               
Conread position:
               
231-503
               

               
Cow position:
               
chr21:45915542-45915804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 84
               

               
Conread position:
               
232-501
               

               
Cow position:
               
chr21:18828128-18828401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
232-502
               

               
Cow position:
               
chr21:24642699-24642422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 145
               

               
Conread position:
               
232-507
               

               
Cow position:
               
chr21:12617337-12617036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
233-502
               

               
Cow position:
               
chr21:28989787-28989518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
18, 145
               

               
Conread position:
               
233-502
               

               
Cow position:
               
chr21:37299636-37299373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 146
               

               
Conread position:
               
233-507
               

               
Cow position:
               
chr21:35569190-35569480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
18, 162
               

               
Conread position:
               
234-379
               

               
Cow position:
               
chr21:17252806-17252952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
17, 82
               

               
Conread position:
               
235-368
               

               
Cow position:
               
chr21:5341922-5342058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
235-398
               

               
Cow position:
               
chr21:36682497-36682332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
16, 141
               

               
Conread position:
               
235-444
               

               
Cow position:
               
chr21:29014387-29014597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
16, 139
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr21:23980010-23980278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 149
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr21:42384680-42384413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 143
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr21:48176991-48176734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 7
               

               
Conread position:
               
235-507
               

               
Cow position:
               
chr21:3763571-3763840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 46
               

               
Conread position:
               
235-507
               

               
Cow position:
               
chr21:46264342-46264071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 100
               

               
Conread position:
               
236-366
               

               
Cow position:
               
chr21:39393920-39393786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
236-368
               

               
Cow position:
               
chr21:11057710-11057843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
236-399
               

               
Cow position:
               
chr21:19360005-19360167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
236-408
               

               
Cow position:
               
chr21:7394118-7394284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 68
               

               
Conread position:
               
236-408
               

               
Cow position:
               
chr21:9027486-9027313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 141
               

               
Conread position:
               
236-415
               

               
Cow position:
               
chr21:41046977-41046796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
236-416
               

               
Cow position:
               
chr21:30980407-30980587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
236-422
               

               
Cow position:
               
chr21:9256493-9256672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
236-462
               

               
Cow position:
               
chr21:829039-829257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
236-477
               

               
Cow position:
               
chr21:40266292-40266051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
236-491
               

               
Cow position:
               
chr21:45850536-45850795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
236-494
               

               
Cow position:
               
chr21:18800363-18800616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
16, 148
               

               
Conread position:
               
236-494
               

               
Cow position:
               
chr21:31090264-31090507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
236-500
               

               
Cow position:
               
chr21:29001986-29002252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
236-500
               

               
Cow position:
               
chr21:44825715-44825979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 143
               

               
Conread position:
               
236-501
               

               
Cow position:
               
chr21:6051674-6051415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
15, 125
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:6713352-6713622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
15, 130
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:9990681-9990420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 122
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:11739949-11740212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:21077480-21077230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:22465361-22465101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 117
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:24858486-24858219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 133
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:27569002-27569256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:27624869-27624613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
14, 125
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:28191203-28190936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:29069155-29069425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 133
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:32297348-32297603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
15, 139
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:33350912-33350650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
15, 122
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:42348525-42348770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:45473587-45473853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 122
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr21:47464948-47465214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
236-506
               

               
Cow position:
               
chr21:7581734-7582006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
15, 129
               

               
Conread position:
               
236-506
               

               
Cow position:
               
chr21:28733742-28734014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
236-506
               

               
Cow position:
               
chr21:45262639-45262910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 139
               

               
Conread position:
               
236-506
               

               
Cow position:
               
chr21:45906452-45906721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
236-507
               

               
Cow position:
               
chr21:29485149-29484880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
236-507
               

               
Cow position:
               
chr21:47763947-47764214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
236-509
               

               
Cow position:
               
chr21:13365513-13365235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 86
               

               
Conread position:
               
237-494
               

               
Cow position:
               
chr21:35354703-35354446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 125
               

               
Conread position:
               
237-502
               

               
Cow position:
               
chr21:30250035-30250286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
237-509
               

               
Cow position:
               
chr21:44515442-44515165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 145
               

               
Conread position:
               
238-432
               

               
Cow position:
               
chr21:38720417-38720227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
54, 43
               

               
Conread position:
               
238-461
               

               
Cow position:
               
chr21:868755-868979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
13, 138
               

               
Conread position:
               
238-461
               

               
Cow position:
               
chr21:47713841-47714057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
238-486
               

               
Cow position:
               
chr21:42841428-42841677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
13, 138
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr21:17009149-17008894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
55, 136
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr21:22210077-22210331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 141
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr21:33563172-33562926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
238-500
               

               
Cow position:
               
chr21:13127930-13128188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
238-500
               

               
Cow position:
               
chr21:28924278-28924022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 136
               

               
Conread position:
               
238-500
               

               
Cow position:
               
chr21:42413928-42414195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 131
               

               
Conread position:
               
238-501
               

               
Cow position:
               
chr21:17184086-17183825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
14, 105
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr21:33888-33625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 127
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr21:10004717-10004978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
11, 136
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr21:10118735-10118461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 116
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr21:12723320-12723064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr21:20160845-20160587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
13, 122
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr21:21169327-21169587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr21:26245083-26244827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
13, 130
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr21:26647847-26648103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
217, 56
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr21:40589313-40589575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 145
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr21:41974209-41974471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
238-503
               

               
Cow position:
               
chr21:25628743-25629005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
238-506
               

               
Cow position:
               
chr21:10151974-10151696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 150
               

               
Conread position:
               
238-507
               

               
Cow position:
               
chr21:10001244-10000976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
11, 137
               

               
Conread position:
               
238-507
               

               
Cow position:
               
chr21:15584250-15584517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
10, 137
               

               
Conread position:
               
238-507
               

               
Cow position:
               
chr21:25383195-25382908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
238-507
               

               
Cow position:
               
chr21:31253702-31253440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
238-507
               

               
Cow position:
               
chr21:36795772-36795500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
13, 137
               

               
Conread position:
               
238-509
               

               
Cow position:
               
chr21:8235393-8235654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
13, 71
               

               
Conread position:
               
238-509
               

               
Cow position:
               
chr21:42007293-42007569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 94
               

               
Conread position:
               
238-509
               

               
Cow position:
               
chr21:44251674-44251935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 153
               

               
Conread position:
               
239-425
               

               
Cow position:
               
chr21:47160386-47160199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
12, 137
               

               
Conread position:
               
239-483
               

               
Cow position:
               
chr21:36910099-36909858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 121
               

               
Conread position:
               
239-489
               

               
Cow position:
               
chr21:28442900-28442664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
10, 128
               

               
Conread position:
               
239-492
               

               
Cow position:
               
chr21:724712-724971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
239-502
               

               
Cow position:
               
chr21:17511945-17511682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
55, 130
               

               
Conread position:
               
239-502
               

               
Cow position:
               
chr21:23321910-23322176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
12, 126
               

               
Conread position:
               
239-502
               

               
Cow position:
               
chr21:33264012-33263753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 129
               

               
Conread position:
               
239-503
               

               
Cow position:
               
chr21:28626405-28626144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
239-507
               

               
Cow position:
               
chr21:30835531-30835261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 82
               

               
Conread position:
               
240-371
               

               
Cow position:
               
chr21:8625340-8625211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
240-374
               

               
Cow position:
               
chr21:9417991-9418125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
12, 69
               

               
Conread position:
               
240-413
               

               
Cow position:
               
chr21:19240706-19240881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
240-472
               

               
Cow position:
               
chr21:2809995-2810227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
240-502
               

               
Cow position:
               
chr21:5392368-5392635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 137
               

               
Conread position:
               
240-502
               

               
Cow position:
               
chr21:33210355-33210106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
11, 127
               

               
Conread position:
               
240-507
               

               
Cow position:
               
chr21:14452401-14452133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
9, 135
               

               
Conread position:
               
241-502
               

               
Cow position:
               
chr21:396032-395774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
52, 80
               

               
Conread position:
               
241-506
               

               
Cow position:
               
chr21:25127769-25127502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 142
               

               
Conread position:
               
242-347
               

               
Cow position:
               
chr21:14228115-14228223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
242-355
               

               
Cow position:
               
chr21:30243517-30243632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
242-436
               

               
Cow position:
               
chr21:40192139-40192330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 103
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr21:41140554-41140783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
242-482
               

               
Cow position:
               
chr21:4280511-4280747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
242-488
               

               
Cow position:
               
chr21:47204-46956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 132
               

               
Conread position:
               
242-502
               

               
Cow position:
               
chr21:9416415-9416150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
51, 133
               

               
Conread position:
               
242-502
               

               
Cow position:
               
chr21:18790401-18790656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
242-502
               

               
Cow position:
               
chr21:41579921-41579655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 133
               

               
Conread position:
               
242-509
               

               
Cow position:
               
chr21:713108-712825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 103
               

               
Conread position:
               
243-509
               

               
Cow position:
               
chr21:20193059-20192793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
244-456
               

               
Cow position:
               
chr21:19059931-19060136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
245-412
               

               
Cow position:
               
chr21:20183233-20183068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
6, 127
               

               
Conread position:
               
249-366
               

               
Cow position:
               
chr21:7088757-7088638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
249-501
               

               
Cow position:
               
chr21:18842080-18842329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
43, 133
               

               
Conread position:
               
249-502
               

               
Cow position:
               
chr21:18844855-18845111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
45, 124
               

               
Conread position:
               
249-511
               

               
Cow position:
               
chr21:18850067-18850330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
45, 128
               

               
Conread position:
               
250-502
               

               
Cow position:
               
chr21:19363304-19363556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
251-502
               

               
Cow position:
               
chr21:45330452-45330700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
41, 63
               

               
Conread position:
               
254-502
               

               
Cow position:
               
chr21:15611292-15611055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
36, 63
               

               
Conread position:
               
254-502
               

               
Cow position:
               
chr21:42540070-42540313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
255-509
               

               
Cow position:
               
chr21:41878620-41878366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
158, 117
               

               
Conread position:
               
256-505
               

               
Cow position:
               
chr21:16187657-16187907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 117
               

               
Conread position:
               
257-500
               

               
Cow position:
               
chr21:40432594-40432355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
37, 117
               

               
Conread position:
               
257-507
               

               
Cow position:
               
chr21:34390826-34391074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
36, 114
               

               
Conread position:
               
259-460
               

               
Cow position:
               
chr21:46144106-46143905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 110
               

               
Conread position:
               
259-491
               

               
Cow position:
               
chr21:9036448-9036211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
261-472
               

               
Cow position:
               
chr21:10514952-10514739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 114
               

               
Conread position:
               
264-502
               

               
Cow position:
               
chr21:4795362-4795131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
150, 32
               

               
Conread position:
               
265-502
               

               
Cow position:
               
chr21:43357115-43357357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
28, 55
               

               
Conread position:
               
267-494
               

               
Cow position:
               
chr21:6017764-6017529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
267-494
               

               
Cow position:
               
chr21:41198260-41198494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
26, 126
               

               
Conread position:
               
268-477
               

               
Cow position:
               
chr21:7564169-7564390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
269-494
               

               
Cow position:
               
chr21:37789862-37790089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 105
               

               
Conread position:
               
269-507
               

               
Cow position:
               
chr21:46912682-46912438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
272-502
               

               
Cow position:
               
chr21:10601241-10601470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 162
               

               
Conread position:
               
274-461
               

               
Cow position:
               
chr21:41598247-41598064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
131, 9
               

               
Conread position:
               
276-490
               

               
Cow position:
               
chr21:13840456-13840239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
276-502
               

               
Cow position:
               
chr21:13488657-13488427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
17, 100
               

               
Conread position:
               
280-502
               

               
Cow position:
               
chr21:17856670-17856451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
280-509
               

               
Cow position:
               
chr21:38664765-38664535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
282-509
               

               
Cow position:
               
chr21:2367456-2367231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
284-502
               

               
Cow position:
               
chr21:47802136-47802356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
290-502
               

               
Cow position:
               
chr21:23192395-23192610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
290-507
               

               
Cow position:
               
chr21:10727391-10727177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
117, 82
               

               
Conread position:
               
291-495
               

               
Cow position:
               
chr21:24131182-24130992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
291-502
               

               
Cow position:
               
chr21:23149908-23150117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
116, 50
               

               
Conread position:
               
291-502
               

               
Cow position:
               
chr21:42024241-42024028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 111
               

               
Conread position:
               
296-502
               

               
Cow position:
               
chr21:2904370-2904569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
200, 53
               

               
Conread position:
               
297-510
               

               
Cow position:
               
chr21:36756707-36756499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
111, 68
               

               
Conread position:
               
298-502
               

               
Cow position:
               
chr21:9360541-9360349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
197, 14
               

               
Conread position:
               
299-502
               

               
Cow position:
               
chr21:32536082-32535880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
114, 73
               

               
Conread position:
               
301-488
               

               
Cow position:
               
chr21:3380975-3381166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
306-502
               

               
Cow position:
               
chr21:39888651-39888844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
102, 67
               

               
Conread position:
               
307-502
               

               
Cow position:
               
chr21:6102164-6102352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
95, 50
               

               
Conread position:
               
314-509
               

               
Cow position:
               
chr21:16612717-16612520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 61
               

               
Conread position:
               
318-502
               

               
Cow position:
               
chr21:12960811-12960995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
8, 58
               

               
Conread position:
               
318-502
               

               
Cow position:
               
chr21:28443290-28443470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
180, 8
               

               
Conread position:
               
319-500
               

               
Cow position:
               
chr21:13898273-13898090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
319-502
               

               
Cow position:
               
chr21:39450076-39450261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
45, 54
               

               
Conread position:
               
320-475
               

               
Cow position:
               
chr21:27079752-27079907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
320-509
               

               
Cow position:
               
chr21:47066814-47067002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
87, 13
               

               
Conread position:
               
327-500
               

               
Cow position:
               
chr21:2785699-2785870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
81, 44
               

               
Conread position:
               
327-502
               

               
Cow position:
               
chr21:27743826-27743649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 46
               

               
Conread position:
               
334-502
               

               
Cow position:
               
chr21:911896-912063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
359-502
               

               
Cow position:
               
chr21:48250976-48251122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
7, 103
               

               
Conread position:
               
364-502
               

               
Cow position:
               
chr21:18495014-18494873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
367-502
               

               
Cow position:
               
chr21:7132426-7132555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
376-489
               

               
Cow position:
               
chr21:14515884-14515769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
384-503
               

               
Cow position:
               
chr21:5636693-5636815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
397-509
               

               
Cow position:
               
chr21:23683560-23683445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               
Show alignments to all cow chromosomes.