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Cow genome map

           
Conread name:
           
Pla1-C0000039_N19
        

               
Conread position:
               
153-331
               

               
Cow position:
               
chr27:16872183-16871996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 74
               

               
Conread position:
               
153-482
               

               
Cow position:
               
chr27:27050137-27049816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
153-502
               

               
Cow position:
               
chr27:29431220-29431573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 175
               

               
Conread position:
               
153-509
               

               
Cow position:
               
chr27:28002055-28001688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
14, 118
               

               
Conread position:
               
153-511
               

               
Cow position:
               
chr27:30764782-30765163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
155-363
               

               
Cow position:
               
chr27:15003228-15002999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
155-408
               

               
Cow position:
               
chr27:6981699-6981939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 8
               

               
Conread position:
               
155-500
               

               
Cow position:
               
chr27:16478572-16478227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
155-502
               

               
Cow position:
               
chr27:27632841-27632497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
61, 16
               

               
Conread position:
               
156-453
               

               
Cow position:
               
chr27:23452216-23452525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
156-507
               

               
Cow position:
               
chr27:11480886-11480506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
60, 261
               

               
Conread position:
               
157-507
               

               
Cow position:
               
chr27:30914759-30915125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
10, 180
               

               
Conread position:
               
160-332
               

               
Cow position:
               
chr27:10394726-10394900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 92
               

               
Conread position:
               
160-494
               

               
Cow position:
               
chr27:13251783-13252113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
160-500
               

               
Cow position:
               
chr27:10992130-10992468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
88, 134
               

               
Conread position:
               
160-502
               

               
Cow position:
               
chr27:26150804-26151136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
161-500
               

               
Cow position:
               
chr27:20354358-20354695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
161-502
               

               
Cow position:
               
chr27:8062594-8062244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
69, 217
               

               
Conread position:
               
161-509
               

               
Cow position:
               
chr27:28164626-28164281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
332, 212
               

               
Conread position:
               
163-286
               

               
Cow position:
               
chr27:21448062-21447929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
163-331
               

               
Cow position:
               
chr27:16047727-16047551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
163-347
               

               
Cow position:
               
chr27:24223715-24223915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
163-351
               

               
Cow position:
               
chr27:20888494-20888687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
163-407
               

               
Cow position:
               
chr27:31210310-31210566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
78, 10
               

               
Conread position:
               
163-408
               

               
Cow position:
               
chr27:20897261-20897004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 158
               

               
Conread position:
               
163-441
               

               
Cow position:
               
chr27:8962482-8962202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
163-449
               

               
Cow position:
               
chr27:20812683-20812967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
163-477
               

               
Cow position:
               
chr27:23918274-23917946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
46, 10
               

               
Conread position:
               
163-493
               

               
Cow position:
               
chr27:22386648-22386976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 10
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr27:7412153-7412495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
72, 213
               

               
Conread position:
               
163-507
               

               
Cow position:
               
chr27:14937651-14937305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 87
               

               
Conread position:
               
165-456
               

               
Cow position:
               
chr27:22225808-22225526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
242, 65
               

               
Conread position:
               
165-482
               

               
Cow position:
               
chr27:15865371-15865700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
70, 225
               

               
Conread position:
               
165-494
               

               
Cow position:
               
chr27:26226527-26226183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
71, 211
               

               
Conread position:
               
166-321
               

               
Cow position:
               
chr27:20325119-20325288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
166-324
               

               
Cow position:
               
chr27:6151076-6151238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 140
               

               
Conread position:
               
166-331
               

               
Cow position:
               
chr27:4398723-4398544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
166-334
               

               
Cow position:
               
chr27:2949554-2949377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
166-341
               

               
Cow position:
               
chr27:19741629-19741451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
166-342
               

               
Cow position:
               
chr27:19576561-19576365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
166-356
               

               
Cow position:
               
chr27:13204227-13204431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
70, 152
               

               
Conread position:
               
166-371
               

               
Cow position:
               
chr27:31556856-31557064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
73, 29
               

               
Conread position:
               
166-423
               

               
Cow position:
               
chr27:26853589-26853321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
48, 149
               

               
Conread position:
               
166-424
               

               
Cow position:
               
chr27:27055058-27055328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
69, 153
               

               
Conread position:
               
166-450
               

               
Cow position:
               
chr27:26984116-26984412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
81, 49
               

               
Conread position:
               
166-460
               

               
Cow position:
               
chr27:4944744-4944445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 219
               

               
Conread position:
               
166-476
               

               
Cow position:
               
chr27:26643465-26643767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 29
               

               
Conread position:
               
166-477
               

               
Cow position:
               
chr27:27613836-27613546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 83
               

               
Conread position:
               
166-482
               

               
Cow position:
               
chr27:20093051-20092743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 71
               

               
Conread position:
               
166-483
               

               
Cow position:
               
chr27:15453975-15454307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 38
               

               
Conread position:
               
166-483
               

               
Cow position:
               
chr27:18558120-18558456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
59, 150
               

               
Conread position:
               
166-485
               

               
Cow position:
               
chr27:26807786-26807465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 68
               

               
Conread position:
               
166-487
               

               
Cow position:
               
chr27:15669012-15668670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 230
               

               
Conread position:
               
166-487
               

               
Cow position:
               
chr27:26441267-26440960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 67
               

               
Conread position:
               
166-488
               

               
Cow position:
               
chr27:299612-299286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
166-493
               

               
Cow position:
               
chr27:29504868-29504541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 63
               

               
Conread position:
               
166-500
               

               
Cow position:
               
chr27:22547626-22547294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 128
               

               
Conread position:
               
166-500
               

               
Cow position:
               
chr27:30890063-30890400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 101
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr27:426732-427085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 163
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr27:2957179-2957517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
61, 142
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr27:8353257-8353589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 129
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr27:14343673-14343350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr27:14670618-14670268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
56, 209
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr27:20553523-20553833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
85, 63
               

               
Conread position:
               
166-502
               

               
Cow position:
               
chr27:20749240-20748894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 137
               

               
Conread position:
               
166-503
               

               
Cow position:
               
chr27:22171064-22171417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 158
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr27:23929740-23930094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
60, 119
               

               
Conread position:
               
166-511
               

               
Cow position:
               
chr27:15867155-15867523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 163
               

               
Conread position:
               
166-511
               

               
Cow position:
               
chr27:20283406-20283766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 219
               

               
Conread position:
               
166-511
               

               
Cow position:
               
chr27:29494136-29493789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
65, 52
               

               
Conread position:
               
167-464
               

               
Cow position:
               
chr27:23748761-23748483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
167-502
               

               
Cow position:
               
chr27:22330895-22330552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
72, 178
               

               
Conread position:
               
167-506
               

               
Cow position:
               
chr27:26424813-26424468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
74, 145
               

               
Conread position:
               
169-287
               

               
Cow position:
               
chr27:23862656-23862537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
169-369
               

               
Cow position:
               
chr27:22245406-22245611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
62, 39
               

               
Conread position:
               
169-369
               

               
Cow position:
               
chr27:31169340-31169125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
169-374
               

               
Cow position:
               
chr27:21993934-21993727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 122
               

               
Conread position:
               
169-485
               

               
Cow position:
               
chr27:19544136-19543807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 55
               

               
Conread position:
               
169-492
               

               
Cow position:
               
chr27:16705018-16705352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
62, 207
               

               
Conread position:
               
169-500
               

               
Cow position:
               
chr27:15409260-15408929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 203
               

               
Conread position:
               
169-502
               

               
Cow position:
               
chr27:16103576-16103920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 120
               

               
Conread position:
               
169-502
               

               
Cow position:
               
chr27:22035606-22035261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 207
               

               
Conread position:
               
169-502
               

               
Cow position:
               
chr27:26865343-26865004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
62, 141
               

               
Conread position:
               
170-314
               

               
Cow position:
               
chr27:31031233-31031385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
170-491
               

               
Cow position:
               
chr27:4858853-4858542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 81
               

               
Conread position:
               
170-494
               

               
Cow position:
               
chr27:18031304-18030953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 179
               

               
Conread position:
               
170-502
               

               
Cow position:
               
chr27:7615303-7614972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 132
               

               
Conread position:
               
172-485
               

               
Cow position:
               
chr27:20037331-20037028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 91
               

               
Conread position:
               
173-304
               

               
Cow position:
               
chr27:4411922-4411787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
173-369
               

               
Cow position:
               
chr27:26617184-26617391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
173-427
               

               
Cow position:
               
chr27:12459057-12459321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
53, 152
               

               
Conread position:
               
173-449
               

               
Cow position:
               
chr27:23560260-23559969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 218
               

               
Conread position:
               
173-500
               

               
Cow position:
               
chr27:17397682-17397336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 224
               

               
Conread position:
               
173-500
               

               
Cow position:
               
chr27:31231310-31230979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
67, 104
               

               
Conread position:
               
173-502
               

               
Cow position:
               
chr27:435001-435348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 204
               

               
Conread position:
               
173-502
               

               
Cow position:
               
chr27:12596551-12596881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
80, 140
               

               
Conread position:
               
173-502
               

               
Cow position:
               
chr27:24446369-24446042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
61, 139
               

               
Conread position:
               
173-507
               

               
Cow position:
               
chr27:21393724-21393381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
64, 92
               

               
Conread position:
               
173-509
               

               
Cow position:
               
chr27:27442391-27442045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
71, 203
               

               
Conread position:
               
174-374
               

               
Cow position:
               
chr27:6319693-6319909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr27:16284259-16284585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 209
               

               
Conread position:
               
174-509
               

               
Cow position:
               
chr27:31373202-31372850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 108
               

               
Conread position:
               
175-314
               

               
Cow position:
               
chr27:5780872-5781018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
175-345
               

               
Cow position:
               
chr27:20770745-20770567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
61, 30
               

               
Conread position:
               
175-507
               

               
Cow position:
               
chr27:25411725-25411396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 14
               

               
Conread position:
               
175-511
               

               
Cow position:
               
chr27:21669341-21668997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 197
               

               
Conread position:
               
180-502
               

               
Cow position:
               
chr27:27039042-27038723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
57, 34
               

               
Conread position:
               
183-401
               

               
Cow position:
               
chr27:28478363-28478594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
52, 208
               

               
Conread position:
               
185-449
               

               
Cow position:
               
chr27:17646376-17646111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
41, 187
               

               
Conread position:
               
192-353
               

               
Cow position:
               
chr27:30986507-30986348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
200-455
               

               
Cow position:
               
chr27:26112101-26111841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
200-502
               

               
Cow position:
               
chr27:18593089-18593383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
200-509
               

               
Cow position:
               
chr27:27389210-27388899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 181
               

               
Conread position:
               
217-502
               

               
Cow position:
               
chr27:19648111-19647823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
218-502
               

               
Cow position:
               
chr27:1122866-1123147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
220-485
               

               
Cow position:
               
chr27:26426048-26426303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 100
               

               
Conread position:
               
220-494
               

               
Cow position:
               
chr27:19660766-19661047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
220-502
               

               
Cow position:
               
chr27:28206636-28206910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
220-502
               

               
Cow position:
               
chr27:30354511-30354227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
33, 148
               

               
Conread position:
               
220-507
               

               
Cow position:
               
chr27:24371076-24371354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
221-502
               

               
Cow position:
               
chr27:23472092-23472368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
30, 89
               

               
Conread position:
               
221-507
               

               
Cow position:
               
chr27:23890772-23891061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
225-407
               

               
Cow position:
               
chr27:237108-237288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 158
               

               
Conread position:
               
225-455
               

               
Cow position:
               
chr27:590924-590699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
26, 148
               

               
Conread position:
               
225-502
               

               
Cow position:
               
chr27:19717754-19718038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
225-502
               

               
Cow position:
               
chr27:30389459-30389180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
225-507
               

               
Cow position:
               
chr27:27136681-27136396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 150
               

               
Conread position:
               
226-461
               

               
Cow position:
               
chr27:15215070-15215307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
226-466
               

               
Cow position:
               
chr27:24440383-24440149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 133
               

               
Conread position:
               
226-500
               

               
Cow position:
               
chr27:8630031-8629760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
25, 77
               

               
Conread position:
               
227-500
               

               
Cow position:
               
chr27:19387858-19388128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 90
               

               
Conread position:
               
227-502
               

               
Cow position:
               
chr27:22569625-22569888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 40
               

               
Conread position:
               
227-502
               

               
Cow position:
               
chr27:27204589-27204301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
69, 56
               

               
Conread position:
               
227-509
               

               
Cow position:
               
chr27:25276982-25277266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
10, 83
               

               
Conread position:
               
228-502
               

               
Cow position:
               
chr27:1498156-1498433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
228-502
               

               
Cow position:
               
chr27:4813041-4812764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 145
               

               
Conread position:
               
229-507
               

               
Cow position:
               
chr27:7731415-7731125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 145
               

               
Conread position:
               
230-431
               

               
Cow position:
               
chr27:20628912-20629106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 117
               

               
Conread position:
               
230-453
               

               
Cow position:
               
chr27:26407316-26407099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
230-495
               

               
Cow position:
               
chr27:20497049-20497322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
21, 148
               

               
Conread position:
               
230-502
               

               
Cow position:
               
chr27:28496527-28496262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
21, 143
               

               
Conread position:
               
232-504
               

               
Cow position:
               
chr27:4819868-4819590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 53
               

               
Conread position:
               
233-334
               

               
Cow position:
               
chr27:9697499-9697603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
233-438
               

               
Cow position:
               
chr27:18767214-18767013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
233-449
               

               
Cow position:
               
chr27:8405974-8405763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 24
               

               
Conread position:
               
233-477
               

               
Cow position:
               
chr27:29312828-29312583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
17, 151
               

               
Conread position:
               
233-502
               

               
Cow position:
               
chr27:15643021-15643288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 51
               

               
Conread position:
               
233-502
               

               
Cow position:
               
chr27:26509307-26509044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chr27:4835761-4835489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 151
               

               
Conread position:
               
235-343
               

               
Cow position:
               
chr27:27531986-27532099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
235-377
               

               
Cow position:
               
chr27:6106552-6106693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
235-445
               

               
Cow position:
               
chr27:4155847-4156060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
235-449
               

               
Cow position:
               
chr27:6302619-6302401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 204
               

               
Conread position:
               
235-450
               

               
Cow position:
               
chr27:31017977-31017771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
235-451
               

               
Cow position:
               
chr27:22489125-22489342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 171
               

               
Conread position:
               
235-456
               

               
Cow position:
               
chr27:25721101-25720872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
16, 140
               

               
Conread position:
               
235-461
               

               
Cow position:
               
chr27:16088653-16088883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 141
               

               
Conread position:
               
235-468
               

               
Cow position:
               
chr27:24738951-24738710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
235-469
               

               
Cow position:
               
chr27:15378625-15378396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr27:4672860-4673126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr27:8168582-8168313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
14, 140
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr27:19896607-19896869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr27:26490060-26489789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
13, 148
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr27:26999573-26999303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 140
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr27:28922044-28921784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
235-502
               

               
Cow position:
               
chr27:28931953-28931675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
235-506
               

               
Cow position:
               
chr27:26238874-26239147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 144
               

               
Conread position:
               
235-507
               

               
Cow position:
               
chr27:8942841-8942560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 136
               

               
Conread position:
               
235-507
               

               
Cow position:
               
chr27:23483075-23483347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 74
               

               
Conread position:
               
235-507
               

               
Cow position:
               
chr27:26959767-26959495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
16, 126
               

               
Conread position:
               
236-335
               

               
Cow position:
               
chr27:23504112-23504010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
236-351
               

               
Cow position:
               
chr27:26323298-26323415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
236-368
               

               
Cow position:
               
chr27:23942996-23943131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
236-371
               

               
Cow position:
               
chr27:6674130-6674266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
15, 69
               

               
Conread position:
               
236-371
               

               
Cow position:
               
chr27:22348339-22348477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 71
               

               
Conread position:
               
236-371
               

               
Cow position:
               
chr27:30489561-30489423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
236-372
               

               
Cow position:
               
chr27:7343579-7343440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
236-401
               

               
Cow position:
               
chr27:19508862-19509027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
15, 148
               

               
Conread position:
               
236-405
               

               
Cow position:
               
chr27:29597898-29597733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
236-424
               

               
Cow position:
               
chr27:20517513-20517696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
57, 23
               

               
Conread position:
               
236-427
               

               
Cow position:
               
chr27:4720263-4720072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
16, 73
               

               
Conread position:
               
236-430
               

               
Cow position:
               
chr27:29593779-29593585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 73
               

               
Conread position:
               
236-449
               

               
Cow position:
               
chr27:23485062-23485276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
57, 70
               

               
Conread position:
               
236-455
               

               
Cow position:
               
chr27:20514672-20514889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
236-465
               

               
Cow position:
               
chr27:6924934-6925167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
236-474
               

               
Cow position:
               
chr27:31219114-31219339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
236-475
               

               
Cow position:
               
chr27:20828860-20828624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 139
               

               
Conread position:
               
236-483
               

               
Cow position:
               
chr27:30407187-30406941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
15, 10
               

               
Conread position:
               
236-484
               

               
Cow position:
               
chr27:31148611-31148858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
58, 137
               

               
Conread position:
               
236-487
               

               
Cow position:
               
chr27:8263487-8263235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
57, 138
               

               
Conread position:
               
236-489
               

               
Cow position:
               
chr27:23594171-23594418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
15, 136
               

               
Conread position:
               
236-500
               

               
Cow position:
               
chr27:27460721-27460461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr27:17331352-17331615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
15, 22
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr27:22220403-22220666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr27:23882518-23882261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
15, 57
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr27:24321039-24321302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr27:27856182-27856446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 131
               

               
Conread position:
               
236-506
               

               
Cow position:
               
chr27:20068125-20067858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 72
               

               
Conread position:
               
236-506
               

               
Cow position:
               
chr27:20795642-20795907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
236-507
               

               
Cow position:
               
chr27:19685864-19685591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 139
               

               
Conread position:
               
237-407
               

               
Cow position:
               
chr27:24305288-24305456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 71
               

               
Conread position:
               
237-488
               

               
Cow position:
               
chr27:20481508-20481276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
237-494
               

               
Cow position:
               
chr27:27694918-27694665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
175, 58
               

               
Conread position:
               
237-502
               

               
Cow position:
               
chr27:22418916-22418652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
237-509
               

               
Cow position:
               
chr27:1768773-1768504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 90
               

               
Conread position:
               
238-429
               

               
Cow position:
               
chr27:17918462-17918273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 113
               

               
Conread position:
               
238-430
               

               
Cow position:
               
chr27:23108049-23107858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
238-449
               

               
Cow position:
               
chr27:28260684-28260477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
10, 84
               

               
Conread position:
               
238-466
               

               
Cow position:
               
chr27:28467597-28467371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
238-483
               

               
Cow position:
               
chr27:7935306-7935059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 138
               

               
Conread position:
               
238-483
               

               
Cow position:
               
chr27:22559972-22559725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 58
               

               
Conread position:
               
238-486
               

               
Cow position:
               
chr27:26413403-26413154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 150
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr27:29380706-29380965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
13, 82
               

               
Conread position:
               
238-500
               

               
Cow position:
               
chr27:12246505-12246769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
238-500
               

               
Cow position:
               
chr27:30359258-30359518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
13, 139
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr27:1353434-1353706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr27:2592393-2592663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
11, 262
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr27:6541483-6541745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr27:10979714-10979976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 132
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr27:24477268-24477529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
13, 120
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr27:27020246-27019986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr27:27064588-27064327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
13, 135
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr27:27438654-27438388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 137
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr27:27641159-27640879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
238-503
               

               
Cow position:
               
chr27:30988649-30988911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 133
               

               
Conread position:
               
238-506
               

               
Cow position:
               
chr27:20641482-20641221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
238-507
               

               
Cow position:
               
chr27:4386210-4385943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 137
               

               
Conread position:
               
238-509
               

               
Cow position:
               
chr27:6550315-6550580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
238-509
               

               
Cow position:
               
chr27:23545479-23545199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 173
               

               
Conread position:
               
238-510
               

               
Cow position:
               
chr27:26581585-26581313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 131
               

               
Conread position:
               
238-511
               

               
Cow position:
               
chr27:10307446-10307172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
238-511
               

               
Cow position:
               
chr27:24227948-24227666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
239-452
               

               
Cow position:
               
chr27:29164626-29164830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
12, 46
               

               
Conread position:
               
239-476
               

               
Cow position:
               
chr27:20758177-20757963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
239-500
               

               
Cow position:
               
chr27:28245655-28245915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
12, 99
               

               
Conread position:
               
239-502
               

               
Cow position:
               
chr27:16589850-16589600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 137
               

               
Conread position:
               
239-507
               

               
Cow position:
               
chr27:30582588-30582861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 255
               

               
Conread position:
               
240-363
               

               
Cow position:
               
chr27:22179913-22179790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
240-475
               

               
Cow position:
               
chr27:16780722-16780956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
240-500
               

               
Cow position:
               
chr27:24014886-24014626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 139
               

               
Conread position:
               
240-502
               

               
Cow position:
               
chr27:26920057-26919786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 170
               

               
Conread position:
               
240-502
               

               
Cow position:
               
chr27:27270689-27270426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 116
               

               
Conread position:
               
240-509
               

               
Cow position:
               
chr27:22454923-22454652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 128
               

               
Conread position:
               
240-509
               

               
Cow position:
               
chr27:30814268-30814534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
241-487
               

               
Cow position:
               
chr27:20549857-20549608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
241-488
               

               
Cow position:
               
chr27:17995088-17994841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 127
               

               
Conread position:
               
241-489
               

               
Cow position:
               
chr27:23554471-23554222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
48, 66
               

               
Conread position:
               
242-347
               

               
Cow position:
               
chr27:11466610-11466502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
242-457
               

               
Cow position:
               
chr27:26433951-26433740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
51, 136
               

               
Conread position:
               
242-477
               

               
Cow position:
               
chr27:23510838-23511080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 138
               

               
Conread position:
               
242-502
               

               
Cow position:
               
chr27:19546656-19546391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 53
               

               
Conread position:
               
242-502
               

               
Cow position:
               
chr27:26428276-26428016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 141
               

               
Conread position:
               
243-369
               

               
Cow position:
               
chr27:788941-788812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
243-489
               

               
Cow position:
               
chr27:20656763-20656532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
7, 116
               

               
Conread position:
               
243-502
               

               
Cow position:
               
chr27:27844146-27843880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 137
               

               
Conread position:
               
244-506
               

               
Cow position:
               
chr27:27245497-27245232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
7, 111
               

               
Conread position:
               
245-502
               

               
Cow position:
               
chr27:4806042-4805796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
246-494
               

               
Cow position:
               
chr27:28271290-28271039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
47, 107
               

               
Conread position:
               
247-502
               

               
Cow position:
               
chr27:30550851-30551112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
37, 133
               

               
Conread position:
               
248-502
               

               
Cow position:
               
chr27:815227-815482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
248-505
               

               
Cow position:
               
chr27:4829946-4829682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
46, 6
               

               
Conread position:
               
249-373
               

               
Cow position:
               
chr27:12710111-12710238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
249-502
               

               
Cow position:
               
chr27:7212850-7212601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
44, 126
               

               
Conread position:
               
255-500
               

               
Cow position:
               
chr27:16625769-16626010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
38, 54
               

               
Conread position:
               
264-449
               

               
Cow position:
               
chr27:21975931-21976111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
30, 101
               

               
Conread position:
               
264-502
               

               
Cow position:
               
chr27:25379866-25380107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
27, 105
               

               
Conread position:
               
265-494
               

               
Cow position:
               
chr27:6499940-6500168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 110
               

               
Conread position:
               
265-501
               

               
Cow position:
               
chr27:706832-707066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
139, 44
               

               
Conread position:
               
265-502
               

               
Cow position:
               
chr27:22513798-22513562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 110
               

               
Conread position:
               
267-422
               

               
Cow position:
               
chr27:21130187-21130344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 130
               

               
Conread position:
               
267-494
               

               
Cow position:
               
chr27:18739258-18739495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 130
               

               
Conread position:
               
267-502
               

               
Cow position:
               
chr27:15871042-15871279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 125
               

               
Conread position:
               
267-509
               

               
Cow position:
               
chr27:20078749-20078988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
26, 43
               

               
Conread position:
               
271-494
               

               
Cow position:
               
chr27:12429292-12429510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 93
               

               
Conread position:
               
273-489
               

               
Cow position:
               
chr27:3784-3986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
280-494
               

               
Cow position:
               
chr27:30804237-30804447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
281-507
               

               
Cow position:
               
chr27:20789484-20789256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
307-507
               

               
Cow position:
               
chr27:2683222-2683020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 74
               

               
Conread position:
               
312-502
               

               
Cow position:
               
chr27:154291-154481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
100, 61
               

               
Conread position:
               
319-491
               

               
Cow position:
               
chr27:20570054-20570226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 40
               

               
Conread position:
               
319-502
               

               
Cow position:
               
chr27:14902718-14902536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
320-502
               

               
Cow position:
               
chr27:27259550-27259725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
140, 50
               

               
Conread position:
               
320-502
               

               
Cow position:
               
chr27:27449498-27449317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
87, 14
               

               
Conread position:
               
320-503
               

               
Cow position:
               
chr27:28061825-28061647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
174, 52
               

               
Conread position:
               
325-507
               

               
Cow position:
               
chr27:16871975-16871792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
85, 46
               

               
Conread position:
               
327-464
               

               
Cow position:
               
chr27:23961855-23961987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
331-502
               

               
Cow position:
               
chr27:10395312-10395145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 46
               

               
Conread position:
               
352-502
               

               
Cow position:
               
chr27:20591947-20592100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
60, 19
               

               
Conread position:
               
378-502
               

               
Cow position:
               
chr27:27055563-27055690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
383-502
               

               
Cow position:
               
chr27:22268495-22268617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               
Show alignments to all cow chromosomes.