Cow genome map
| Conread name: | Pla1-C0000039_P16 |
| Conread position: | 1-328 |
| Cow position: | chr23:24535785-24535458 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 1-367 |
| Cow position: | chr23:24522560-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 142 |
| Conread position: | 1-401 |
| Cow position: | chr23:25698480-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 1-453 |
| Cow position: | chr23:24522641-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 1-480 |
| Cow position: | chr23:24522725-24522249 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 123 |
| Conread position: | 1-480 |
| Cow position: | chr23:24535953-24535474 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 237 |
| Conread position: | 1-480 |
| Cow position: | chr23:25626374-25626850 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 2-310 |
| Cow position: | chr23:24522475-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 226, 230 |
| Conread position: | 3-261 |
| Cow position: | chr23:24654127-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 208, 190 |
| Conread position: | 3-336 |
| Cow position: | chr23:25660413-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 186, 208 |
| Conread position: | 3-339 |
| Cow position: | chr23:25724033-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 3-353 |
| Cow position: | chr23:24626402-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 0 |
| Conread position: | 3-409 |
| Cow position: | chr23:25660329-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 3-450 |
| Cow position: | chr23:24560544-24560097 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 229 |
| Conread position: | 3-452 |
| Cow position: | chr23:24547152-24546703 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 230 |
| Conread position: | 3-452 |
| Cow position: | chr23:24547320-24546871 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 3-453 |
| Cow position: | chr23:24535867-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 3-453 |
| Cow position: | chr23:25660245-25660695 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 122 |
| Conread position: | 3-456 |
| Cow position: | chr23:25626460-25626910 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 75 |
| Conread position: | 3-473 |
| Cow position: | chr23:24547236-24546766 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 230 |
| Conread position: | 3-480 |
| Cow position: | chr23:24560628-24560151 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 201 |
| Conread position: | 3-480 |
| Cow position: | chr23:24560796-24560319 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 59 |
| Conread position: | 4-430 |
| Cow position: | chr23:24626319-24626743 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 228 |
| Conread position: | 4-453 |
| Cow position: | chr23:24639395-24639844 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 4-480 |
| Cow position: | chr23:24560879-24560403 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 7-452 |
| Cow position: | chr23:24639482-24639927 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 7-471 |
| Cow position: | chr23:25626128-25626593 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 136 |
| Conread position: | 9-400 |
| Cow position: | chr23:25724111-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-450 |
| Cow position: | chr23:24639316-24639758 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 73 |
| Conread position: | 9-451 |
| Cow position: | chr23:25660167-25660610 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 9-454 |
| Cow position: | chr23:24639652-24640098 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 430, 0 |
| Conread position: | 9-480 |
| Cow position: | chr23:24639568-24640039 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 14-451 |
| Cow position: | chr23:25625967-25626405 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 14-452 |
| Cow position: | chr23:24639237-24639675 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 152 |
| Conread position: | 14-452 |
| Cow position: | chr23:25698635-25698197 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 15-452 |
| Cow position: | chr23:24536023-24535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 125 |
| Conread position: | 15-480 |
| Cow position: | chr23:24560700-24560235 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 218 |
| Conread position: | 17-453 |
| Cow position: | chr23:24626251-24626684 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 18 |
| Conread position: | 64-480 |
| Cow position: | chr23:24560903-24560487 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 182 |
| Conread position: | 72-480 |
| Cow position: | chr23:24536050-24535642 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 151 |
| Conread position: | 73-453 |
| Cow position: | chr23:24547334-24546954 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 133 |
| Conread position: | 76-453 |
| Cow position: | chr23:25698657-25698280 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 295, 317 |
| Conread position: | 99-451 |
| Cow position: | chr23:24639154-24639506 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 123-480 |
| Cow position: | chr23:24626198-24626543 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 118, 42 |
| Conread position: | 141-451 |
| Cow position: | chr23:25698676-25698366 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 71, 62 |
| Conread position: | 141-480 |
| Cow position: | chr23:25626010-25626349 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 87, 97 |
| Conread position: | 157-451 |
| Cow position: | chr23:25724131-25723837 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-442 |
| Cow position: | chr23:24654043-24654314 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 240-453 |
| Cow position: | chr23:25660146-25660359 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 241-480 |
| Cow position: | chr23:24547334-24547095 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 255-453 |
| Cow position: | chr23:24654043-24654241 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 308-452 |
| Cow position: | chr23:25626009-25626153 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.