Cow genome map
| Conread name: | Pla1-C0000039_P16 |
| Conread position: | 1-288 |
| Cow position: | chr25:34769529-34769242 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 227, 233 |
| Conread position: | 1-323 |
| Cow position: | chr25:366732-367054 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 15 |
| Conread position: | 1-366 |
| Cow position: | chr25:23420474-23420840 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 124 |
| Conread position: | 1-420 |
| Cow position: | chr25:346455-346873 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 132, 147 |
| Conread position: | 1-435 |
| Cow position: | chr25:34447449-34447876 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 38 |
| Conread position: | 1-451 |
| Cow position: | chr25:33157298-33156848 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 237 |
| Conread position: | 1-453 |
| Cow position: | chr25:34447029-34447481 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 232 |
| Conread position: | 1-453 |
| Cow position: | chr25:34769949-34769497 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 237 |
| Conread position: | 1-465 |
| Cow position: | chr25:33305312-33304853 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 195 |
| Conread position: | 1-479 |
| Cow position: | chr25:33298654-33299132 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 47 |
| Conread position: | 1-479 |
| Cow position: | chr25:36800722-36801200 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 383 |
| Conread position: | 1-480 |
| Cow position: | chr25:34713873-34714352 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 298 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 2-430 |
| Cow position: | chr25:36801059-36801475 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 3-367 |
| Cow position: | chr25:34769611-34769247 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-433 |
| Cow position: | chr25:33127811-33128241 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 229 |
| Conread position: | 3-443 |
| Cow position: | chr25:33157380-33156940 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 235 |
| Conread position: | 3-443 |
| Cow position: | chr25:34447367-34447800 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 232 |
| Conread position: | 3-445 |
| Cow position: | chr25:33298824-33299266 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 140 |
| Conread position: | 3-446 |
| Cow position: | chr25:33299160-33299603 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 201 |
| Conread position: | 3-446 |
| Cow position: | chr25:33299328-33299771 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 372 |
| Conread position: | 3-446 |
| Cow position: | chr25:36801468-36801911 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 203 |
| Conread position: | 3-450 |
| Cow position: | chr25:23420392-23420840 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 138 |
| Conread position: | 3-450 |
| Cow position: | chr25:33299412-33299855 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 202 |
| Conread position: | 3-451 |
| Cow position: | chr25:34447115-34447563 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 230 |
| Conread position: | 3-451 |
| Cow position: | chr25:34769779-34769331 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-452 |
| Cow position: | chr25:326590-327047 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 282 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 3-452 |
| Cow position: | chr25:33298740-33299189 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 231 |
| Conread position: | 3-452 |
| Cow position: | chr25:33299076-33299525 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 3-453 |
| Cow position: | chr25:34714043-34714493 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 282 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 225, 234 |
| Conread position: | 3-453 |
| Cow position: | chr25:34769863-34769413 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 230 |
| Conread position: | 3-453 |
| Cow position: | chr25:34770031-34769581 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-453 |
| Cow position: | chr25:36800808-36801258 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 375 |
| Conread position: | 3-456 |
| Cow position: | chr25:36800892-36801344 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 213 |
| Conread position: | 3-464 |
| Cow position: | chr25:36800556-36801017 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-471 |
| Cow position: | chr25:33298572-33299040 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 129 |
| Conread position: | 3-473 |
| Cow position: | chr25:36801552-36802015 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 204 |
| Conread position: | 3-479 |
| Cow position: | chr25:33299244-33299720 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 3-479 |
| Cow position: | chr25:36801384-36801860 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 372 |
| Conread position: | 5-472 |
| Cow position: | chr25:36800642-36801109 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 130 |
| Conread position: | 6-452 |
| Cow position: | chr25:33306286-33305842 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 298 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 6-478 |
| Cow position: | chr25:36801315-36801775 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 21 |
| Conread position: | 7-193 |
| Cow position: | chr25:33305621-33305434 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 9-430 |
| Cow position: | chr25:33298998-33299419 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 365 |
| Conread position: | 9-480 |
| Cow position: | chr25:34433539-34434004 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 232, 68 |
| Conread position: | 9-480 |
| Cow position: | chr25:34446953-34447424 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 223 |
| Conread position: | 11-453 |
| Cow position: | chr25:23420316-23420758 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 13-419 |
| Cow position: | chr25:33145033-33145439 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 108, 118 |
| Conread position: | 14-453 |
| Cow position: | chr25:33157453-33157014 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 14-474 |
| Cow position: | chr25:33305944-33305490 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 122 |
| Conread position: | 15-478 |
| Cow position: | chr25:33298500-33298963 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 202 |
| Conread position: | 15-480 |
| Cow position: | chr25:33127739-33128204 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 218 |
| Conread position: | 17-465 |
| Cow position: | chr25:34713973-34714421 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 103, 91 |
| Conread position: | 18-451 |
| Cow position: | chr25:34732416-34731982 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 174, 197 |
| Conread position: | 18-452 |
| Cow position: | chr25:326353-326787 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 148, 155 |
| Conread position: | 42-480 |
| Cow position: | chr25:34713830-34714268 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 275 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-480 |
| Cow position: | chr25:33298307-33298713 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 310, 81 |
| Conread position: | 63-453 |
| Cow position: | chr25:34447259-34447649 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 175 |
| Conread position: | 63-471 |
| Cow position: | chr25:36800532-36800940 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 173 |
| Conread position: | 65-480 |
| Cow position: | chr25:23420218-23420617 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 276 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 163, 5 |
| Conread position: | 68-453 |
| Cow position: | chr25:34446928-34447313 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 69-451 |
| Cow position: | chr25:33298470-33298852 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 139 |
| Conread position: | 72-480 |
| Cow position: | chr25:33305408-33305004 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 90 |
| Conread position: | 73-416 |
| Cow position: | chr25:346443-346786 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 75-448 |
| Cow position: | chr25:326494-326867 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 120, 133 |
| Conread position: | 75-478 |
| Cow position: | chr25:33157476-33157073 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 153, 163 |
| Conread position: | 75-480 |
| Cow position: | chr25:36800382-36800781 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 247, 51 |
| Conread position: | 77-407 |
| Cow position: | chr25:366724-367054 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 103, 108 |
| Conread position: | 78-461 |
| Cow position: | chr25:36800463-36800846 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 81-452 |
| Cow position: | chr25:34446857-34447228 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 81-453 |
| Cow position: | chr25:34770121-34769749 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 152 |
| Conread position: | 92-478 |
| Cow position: | chr25:33127732-33128118 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 146 |
| Conread position: | 133-453 |
| Cow position: | chr25:33157502-33157182 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 62, 75 |
| Conread position: | 141-420 |
| Cow position: | chr25:326986-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 141-453 |
| Cow position: | chr25:18642192-18641877 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 85 |
| Conread position: | 142-453 |
| Cow position: | chr25:34732124-34731813 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 160, 151 |
| Conread position: | 144-431 |
| Cow position: | chr25:36844638-36844351 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 146-453 |
| Cow position: | chr25:33127703-33128009 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 153-473 |
| Cow position: | chr25:33298470-33298790 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 231 |
| Conread position: | 156-451 |
| Cow position: | chr25:34732614-34732318 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 161-460 |
| Cow position: | chr25:366724-367023 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 231-430 |
| Cow position: | chr25:34433005-34433204 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 260-480 |
| Cow position: | chr25:33127732-33127952 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.