Cow genome map
| Conread name: | Pla1-C0000039_P16 |
| Conread position: | 1-254 |
| Cow position: | chr28:7758583-7758835 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 213, 195 |
| Conread position: | 1-265 |
| Cow position: | chr28:7810682-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-451 |
| Cow position: | chr28:7758011-7758445 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 274 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 129, 144 |
| Conread position: | 1-453 |
| Cow position: | chr28:9290179-9290625 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 1-479 |
| Cow position: | chr28:11334130-11333652 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 300 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 110, 144 |
| Conread position: | 1-480 |
| Cow position: | chr28:7810439-7810909 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 99 |
| Conread position: | 1-480 |
| Cow position: | chr28:9252776-9253253 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 115 |
| Conread position: | 1-480 |
| Cow position: | chr28:9252942-9253421 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 232 |
| Conread position: | 1-480 |
| Cow position: | chr28:9298908-9299371 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 39 |
| Conread position: | 3-370 |
| Cow position: | chr28:9253280-9253648 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 233 |
| Conread position: | 3-404 |
| Cow position: | chr28:9299314-9299712 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 3-406 |
| Cow position: | chr28:7757929-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-417 |
| Cow position: | chr28:9253196-9253610 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-446 |
| Cow position: | chr28:9298743-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 75 |
| Conread position: | 3-451 |
| Cow position: | chr28:7757593-7758042 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 203 |
| Conread position: | 3-454 |
| Cow position: | chr28:7758417-7758868 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 230 |
| Conread position: | 3-459 |
| Cow position: | chr28:9299076-9299520 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 110 |
| Conread position: | 3-460 |
| Cow position: | chr28:7757761-7758219 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 229 |
| Conread position: | 3-465 |
| Cow position: | chr28:7757677-7758139 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 229 |
| Conread position: | 3-466 |
| Cow position: | chr28:34673364-34673828 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 290 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 120, 128 |
| Conread position: | 3-478 |
| Cow position: | chr28:11334212-11333737 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 3-480 |
| Cow position: | chr28:7810357-7810825 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 171 |
| Conread position: | 3-480 |
| Cow position: | chr28:9253112-9253589 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 229 |
| Conread position: | 3-480 |
| Cow position: | chr28:9299230-9299704 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 202 |
| Conread position: | 4-436 |
| Cow position: | chr28:7758334-7758766 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 313 |
| Conread position: | 5-452 |
| Cow position: | chr28:7757343-7757790 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 58 |
| Conread position: | 5-452 |
| Cow position: | chr28:7757427-7757874 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 369 |
| Conread position: | 5-452 |
| Cow position: | chr28:9298328-9298772 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 289 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 186, 173 |
| Conread position: | 5-471 |
| Cow position: | chr28:7757847-7758313 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 228 |
| Conread position: | 7-452 |
| Cow position: | chr28:34679547-34679110 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 297 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 7-471 |
| Cow position: | chr28:7757513-7757977 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 226 |
| Conread position: | 13-452 |
| Cow position: | chr28:9253038-9253477 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 219 |
| Conread position: | 14-430 |
| Cow position: | chr28:7810527-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 14-471 |
| Cow position: | chr28:7810284-7810732 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 253 |
| Conread position: | 14-480 |
| Cow position: | chr28:9298421-9298883 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 307 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 16-480 |
| Cow position: | chr28:9290112-9290568 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 11 |
| Conread position: | 20-449 |
| Cow position: | chr28:9289782-9290207 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 104 |
| Conread position: | 53-472 |
| Cow position: | chr28:11334246-11333827 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 175, 185 |
| Conread position: | 57-395 |
| Cow position: | chr28:7809811-7810143 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 171, 159 |
| Conread position: | 63-480 |
| Cow position: | chr28:9252921-9253337 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 18 |
| Conread position: | 66-480 |
| Cow position: | chr28:7758313-7758726 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 7 |
| Conread position: | 72-478 |
| Cow position: | chr28:9298561-9298965 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 106 |
| Conread position: | 75-420 |
| Cow position: | chr28:9299218-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 158 |
| Conread position: | 76-479 |
| Cow position: | chr28:34673353-34673756 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 134, 139 |
| Conread position: | 78-445 |
| Cow position: | chr28:33210228-33210596 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 118, 128 |
| Conread position: | 80-480 |
| Cow position: | chr28:7757334-7757734 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 157 |
| Conread position: | 84-429 |
| Cow position: | chr28:9252526-9252868 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 141, 149 |
| Conread position: | 243-451 |
| Cow position: | chr28:34679561-34679357 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 142, 15 |
Show alignments to all cow chromosomes.