Cow genome map
| Conread name: | Pla1-C0000048_H07 |
| Conread position: | 103-391 |
| Cow position: | chr14:25836050-25836338 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 134, 147 |
| Conread position: | 103-392 |
| Cow position: | chr14:25876658-25876947 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 103-431 |
| Cow position: | chr14:3127599-3127271 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 133, 115 |
| Conread position: | 103-431 |
| Cow position: | chr14:3156153-3156481 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 273, 269 |
| Conread position: | 103-463 |
| Cow position: | chr14:3080339-3079977 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 303, 297 |
| Conread position: | 103-466 |
| Cow position: | chr14:680226-680589 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 119, 113 |
| Conread position: | 103-466 |
| Cow position: | chr14:680898-681261 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 273, 269 |
| Conread position: | 103-466 |
| Cow position: | chr14:3061318-3060955 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 103-466 |
| Cow position: | chr14:3061486-3061123 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 112, 96 |
| Conread position: | 103-466 |
| Cow position: | chr14:3080423-3080060 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 132, 113 |
| Conread position: | 103-466 |
| Cow position: | chr14:3080843-3080480 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 307, 298 |
| Conread position: | 103-466 |
| Cow position: | chr14:3127851-3127488 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 196, 203 |
| Conread position: | 103-466 |
| Cow position: | chr14:3155412-3155775 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 292, 282 |
| Conread position: | 103-466 |
| Cow position: | chr14:3155985-3156348 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 103-466 |
| Cow position: | chr14:25860195-25860558 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 221, 195 |
| Conread position: | 103-466 |
| Cow position: | chr14:25877246-25877609 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 221, 207 |
| Conread position: | 103-466 |
| Cow position: | chr14:25895285-25895648 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-467 |
| Cow position: | chr14:3101165-3100806 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 152, 102 |
| Conread position: | 104-466 |
| Cow position: | chr14:25795010-25794648 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 137, 114 |
| Conread position: | 112-466 |
| Cow position: | chr14:3061645-3061291 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 271, 260 |
| Conread position: | 113-466 |
| Cow position: | chr14:3156079-3156432 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 211, 198 |
| Conread position: | 115-450 |
| Cow position: | chr14:3061390-3061055 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 128, 135 |
| Conread position: | 115-466 |
| Cow position: | chr14:3080663-3080312 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 261, 257 |
| Conread position: | 116-350 |
| Cow position: | chr14:3156250-3156484 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 116-432 |
| Cow position: | chr14:434078-434394 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 119, 100 |
| Conread position: | 116-454 |
| Cow position: | chr14:680743-681081 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 292, 286 |
| Conread position: | 116-454 |
| Cow position: | chr14:3061725-3061387 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 99, 83 |
| Conread position: | 116-454 |
| Cow position: | chr14:3080578-3080240 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 111, 100 |
| Conread position: | 116-463 |
| Cow position: | chr14:3127754-3127407 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 260, 256 |
| Conread position: | 116-466 |
| Cow position: | chr14:447605-447955 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 260, 256 |
| Conread position: | 116-466 |
| Cow position: | chr14:447857-448207 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 116-466 |
| Cow position: | chr14:680407-680757 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 116-466 |
| Cow position: | chr14:680491-680841 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 106, 97 |
| Conread position: | 116-466 |
| Cow position: | chr14:680575-680925 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 116-466 |
| Cow position: | chr14:680659-681009 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 106, 97 |
| Conread position: | 116-466 |
| Cow position: | chr14:3061557-3061207 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 113, 100 |
| Conread position: | 116-466 |
| Cow position: | chr14:3080158-3079808 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 292, 284 |
| Conread position: | 117-445 |
| Cow position: | chr14:25895971-25896299 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 116, 132 |
| Conread position: | 117-465 |
| Cow position: | chr14:3128005-3127657 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 117-466 |
| Cow position: | chr14:433911-434260 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 259, 255 |
| Conread position: | 117-466 |
| Cow position: | chr14:3080745-3080396 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 278, 267 |
| Conread position: | 117-467 |
| Cow position: | chr14:3080073-3079723 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 259, 255 |
| Conread position: | 121-466 |
| Cow position: | chr14:447778-448123 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 288, 277 |
| Conread position: | 122-454 |
| Cow position: | chr14:3061131-3060799 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 107, 94 |
| Conread position: | 122-466 |
| Cow position: | chr14:3127664-3127320 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 273, 263 |
| Conread position: | 123-356 |
| Cow position: | chr14:3079899-3079666 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-360 |
| Cow position: | chr14:3155600-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-391 |
| Cow position: | chr14:25836910-25837178 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 123-391 |
| Cow position: | chr14:25860383-25860651 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-391 |
| Cow position: | chr14:25877434-25877702 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-422 |
| Cow position: | chr14:447948-448247 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-454 |
| Cow position: | chr14:680834-681165 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-466 |
| Cow position: | chr14:447696-448039 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 98, 90 |
| Conread position: | 123-466 |
| Cow position: | chr14:3061214-3060871 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 253, 249 |
| Conread position: | 123-466 |
| Cow position: | chr14:3080907-3080564 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 123-466 |
| Cow position: | chr14:25895137-25895480 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 32 |
| Conread position: | 123-467 |
| Cow position: | chr14:3080487-3080143 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 265, 249 |
| Conread position: | 125-465 |
| Cow position: | chr14:25860049-25860389 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 112, 121 |
| Conread position: | 126-447 |
| Cow position: | chr14:3079980-3079657 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 302, 0 |
| Conread position: | 126-447 |
| Cow position: | chr14:3128164-3127843 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 250, 246 |
| Conread position: | 126-455 |
| Cow position: | chr14:434004-434333 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 285, 258 |
| Conread position: | 126-466 |
| Cow position: | chr14:447531-447871 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 263, 255 |
| Conread position: | 126-466 |
| Cow position: | chr14:25895812-25896152 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 116, 104 |
| Conread position: | 137-466 |
| Cow position: | chr14:3080221-3079892 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 273, 247 |
| Conread position: | 137-466 |
| Cow position: | chr14:3128069-3127740 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 91, 81 |
| Conread position: | 156-466 |
| Cow position: | chr14:3100865-3100555 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 153, 168 |
| Conread position: | 156-466 |
| Cow position: | chr14:3127882-3127572 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 156-467 |
| Cow position: | chr14:3155954-3156265 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 220, 216 |
| Conread position: | 183-463 |
| Cow position: | chr14:3061742-3061462 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 183-466 |
| Cow position: | chr14:3155408-3155691 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 267-467 |
| Cow position: | chr14:3061742-3061542 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 116, 105 |
Show alignments to all cow chromosomes.