Cow genome map
| Conread name: | Pla1-C0000048_H07 |
| Conread position: | 88-466 |
| Cow position: | chr22:11640593-11640971 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-393 |
| Cow position: | chr22:12499124-12499413 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 103-424 |
| Cow position: | chr22:12476135-12475814 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 103-441 |
| Cow position: | chr22:12418773-12418435 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 132, 115 |
| Conread position: | 103-447 |
| Cow position: | chr22:12399506-12399162 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 103-464 |
| Cow position: | chr22:12432410-12432049 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 206, 216 |
| Conread position: | 103-466 |
| Cow position: | chr22:12385328-12384965 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 297, 306 |
| Conread position: | 103-466 |
| Cow position: | chr22:12385498-12385133 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 103-466 |
| Cow position: | chr22:12399338-12398975 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 126, 113 |
| Conread position: | 103-466 |
| Cow position: | chr22:12399674-12399311 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 143, 147 |
| Conread position: | 103-466 |
| Cow position: | chr22:12418857-12418494 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 292, 281 |
| Conread position: | 103-466 |
| Cow position: | chr22:12431738-12431375 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-466 |
| Cow position: | chr22:12432158-12431795 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 31 |
| Conread position: | 103-466 |
| Cow position: | chr22:12458606-12458243 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 303, 298 |
| Conread position: | 103-466 |
| Cow position: | chr22:12476303-12475940 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 292, 282 |
| Conread position: | 103-466 |
| Cow position: | chr22:12498956-12499319 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 321, 332 |
| Conread position: | 103-467 |
| Cow position: | chr22:12431234-12430870 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 103-467 |
| Cow position: | chr22:12432326-12431962 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 263, 254 |
| Conread position: | 103-467 |
| Cow position: | chr22:12475967-12475603 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 105-397 |
| Cow position: | chr22:12399084-12398792 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 194, 201 |
| Conread position: | 105-465 |
| Cow position: | chr22:12385409-12385050 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 292, 7 |
| Conread position: | 105-466 |
| Cow position: | chr22:12476217-12475856 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 290, 280 |
| Conread position: | 112-447 |
| Cow position: | chr22:12475622-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 187, 195 |
| Conread position: | 112-447 |
| Cow position: | chr22:12499637-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 187, 194 |
| Conread position: | 114-467 |
| Cow position: | chr22:46654028-46654379 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 116-467 |
| Cow position: | chr22:12458425-12458074 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 117-445 |
| Cow position: | chr22:11640790-11641118 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 117-467 |
| Cow position: | chr22:12399156-12398806 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 117-467 |
| Cow position: | chr22:12431304-12430954 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 122-466 |
| Cow position: | chr22:12418922-12418578 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 285, 263 |
| Conread position: | 122-466 |
| Cow position: | chr22:12475696-12475352 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 122-466 |
| Cow position: | chr22:12499563-12499907 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 122-467 |
| Cow position: | chr22:12498891-12499236 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 123-391 |
| Cow position: | chr22:11701375-11701643 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 123-424 |
| Cow position: | chr22:12419005-12418704 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 253, 249 |
| Conread position: | 123-464 |
| Cow position: | chr22:11640880-11641221 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 286, 258 |
| Conread position: | 123-464 |
| Cow position: | chr22:11701123-11701464 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 121, 93 |
| Conread position: | 123-465 |
| Cow position: | chr22:12399234-12398892 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 123-466 |
| Cow position: | chr22:11641048-11641391 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 105, 93 |
| Conread position: | 123-466 |
| Cow position: | chr22:11666469-11666812 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 121, 93 |
| Conread position: | 124-466 |
| Cow position: | chr22:14429837-14430179 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 117, 97 |
| Conread position: | 148-466 |
| Cow position: | chr22:12399713-12399395 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 154-391 |
| Cow position: | chr22:12432443-12432206 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-391 |
| Cow position: | chr22:11666677-11666905 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-466 |
| Cow position: | chr22:11701331-11701634 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 177-466 |
| Cow position: | chr22:11701261-11701550 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 154, 123 |
| Conread position: | 192-464 |
| Cow position: | chr22:11666622-11666894 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 203, 193 |
Show alignments to all cow chromosomes.