Cow genome map
| Conread name: | Pla1-C0000048_H07 |
| Conread position: | 75-446 |
| Cow position: | chr25:4657491-4657121 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 336, 16 |
| Conread position: | 102-448 |
| Cow position: | chr25:33305402-33305061 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 208, 84 |
| Conread position: | 103-298 |
| Cow position: | chr25:414695-414500 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-355 |
| Cow position: | chr25:427330-427582 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-381 |
| Cow position: | chr25:34769535-34769257 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-382 |
| Cow position: | chr25:366726-367005 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 112, 120 |
| Conread position: | 103-431 |
| Cow position: | chr25:33127887-33128215 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 303, 279 |
| Conread position: | 103-444 |
| Cow position: | chr25:36800716-36801057 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-447 |
| Cow position: | chr25:25652189-25652533 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 292, 282 |
| Conread position: | 103-455 |
| Cow position: | chr25:33299068-33299420 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 292, 282 |
| Conread position: | 103-465 |
| Cow position: | chr25:23420384-23420746 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-465 |
| Cow position: | chr25:33305797-33305438 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 201, 70 |
| Conread position: | 103-466 |
| Cow position: | chr25:25652357-25652720 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 286, 278 |
| Conread position: | 103-466 |
| Cow position: | chr25:25652441-25652804 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 286, 278 |
| Conread position: | 103-466 |
| Cow position: | chr25:25652609-25652972 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 103-466 |
| Cow position: | chr25:33144934-33145294 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 103-466 |
| Cow position: | chr25:33298648-33299011 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 103-466 |
| Cow position: | chr25:34447023-34447386 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 292, 279 |
| Conread position: | 103-466 |
| Cow position: | chr25:34763331-34763691 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 304, 114 |
| Conread position: | 103-466 |
| Cow position: | chr25:34769955-34769592 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 103-466 |
| Cow position: | chr25:34770039-34769676 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 304, 286 |
| Conread position: | 103-466 |
| Cow position: | chr25:36800800-36801163 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-466 |
| Cow position: | chr25:36801052-36801403 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 126, 114 |
| Conread position: | 103-466 |
| Cow position: | chr25:36801544-36801907 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-467 |
| Cow position: | chr25:33157304-33156940 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 283 |
| Conread position: | 103-467 |
| Cow position: | chr25:33298480-33298844 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-467 |
| Cow position: | chr25:34732607-34732243 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 137, 128 |
| Conread position: | 104-466 |
| Cow position: | chr25:33298985-33299347 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 205, 211 |
| Conread position: | 104-467 |
| Cow position: | chr25:33298565-33298928 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 105-399 |
| Cow position: | chr25:23420470-23420764 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-444 |
| Cow position: | chr25:326506-326839 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 297, 279 |
| Conread position: | 111-466 |
| Cow position: | chr25:33157464-33157109 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-467 |
| Cow position: | chr25:33127729-33128083 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 284, 11 |
| Conread position: | 113-278 |
| Cow position: | chr25:24398976-24398811 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 126, 115 |
| Conread position: | 116-466 |
| Cow position: | chr25:25652874-25653224 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 105, 100 |
| Conread position: | 116-466 |
| Cow position: | chr25:25652958-25653308 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 105, 97 |
| Conread position: | 116-466 |
| Cow position: | chr25:34762927-34763274 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 289, 187 |
| Conread position: | 116-466 |
| Cow position: | chr25:34763260-34763607 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 273, 192 |
| Conread position: | 116-466 |
| Cow position: | chr25:34770110-34769760 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 209, 189 |
| Conread position: | 117-466 |
| Cow position: | chr25:25652287-25652636 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 104, 99 |
| Conread position: | 117-466 |
| Cow position: | chr25:25652791-25653140 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 112, 96 |
| Conread position: | 117-466 |
| Cow position: | chr25:33299250-33299599 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 117-466 |
| Cow position: | chr25:36800646-36800995 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 117-467 |
| Cow position: | chr25:33298914-33299264 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-466 |
| Cow position: | chr25:33298750-33299095 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 122-430 |
| Cow position: | chr25:34769600-34769292 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 122-466 |
| Cow position: | chr25:36801395-36801739 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 109, 96 |
| Conread position: | 122-467 |
| Cow position: | chr25:34446874-34447219 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 56 |
| Conread position: | 122-467 |
| Cow position: | chr25:36800903-36801248 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 254, 250 |
| Conread position: | 123-442 |
| Cow position: | chr25:33299508-33299827 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 283, 279 |
| Conread position: | 123-442 |
| Cow position: | chr25:36801648-36801967 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-455 |
| Cow position: | chr25:33157116-33156785 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 127 |
| Conread position: | 123-463 |
| Cow position: | chr25:34763183-34763520 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 262, 0 |
| Conread position: | 123-466 |
| Cow position: | chr25:33157200-33156857 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 261, 268 |
| Conread position: | 123-466 |
| Cow position: | chr25:33157368-33157025 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 284, 274 |
| Conread position: | 123-466 |
| Cow position: | chr25:36800988-36801331 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 194, 181 |
| Conread position: | 123-467 |
| Cow position: | chr25:33299340-33299684 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 284, 280 |
| Conread position: | 125-466 |
| Cow position: | chr25:33299426-33299767 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-442 |
| Cow position: | chr25:326947-327263 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 188, 177 |
| Conread position: | 126-463 |
| Cow position: | chr25:34762853-34763187 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 254, 0 |
| Conread position: | 126-466 |
| Cow position: | chr25:33145038-33145378 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 189, 194 |
| Conread position: | 126-466 |
| Cow position: | chr25:33298839-33299179 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 271, 259 |
| Conread position: | 135-466 |
| Cow position: | chr25:33157524-33157193 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 137-466 |
| Cow position: | chr25:25652559-25652888 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 84, 79 |
| Conread position: | 137-466 |
| Cow position: | chr25:36800582-36800911 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 140-466 |
| Cow position: | chr25:34763116-34763442 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 81, 73 |
| Conread position: | 156-465 |
| Cow position: | chr25:34769734-34769425 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 250, 243 |
| Conread position: | 160-431 |
| Cow position: | chr25:34763469-34763740 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 53 |
| Conread position: | 165-466 |
| Cow position: | chr25:22235976-22236277 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 243, 225 |
| Conread position: | 171-466 |
| Cow position: | chr25:36801528-36801823 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 180-447 |
| Cow position: | chr25:36844626-36844359 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 37 |
| Conread position: | 183-466 |
| Cow position: | chr25:33144846-33145126 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 171, 166 |
Show alignments to all cow chromosomes.