Cow genome map
| Conread name: | Pla1-C0000048_H07 |
| Conread position: | 89-465 |
| Cow position: | chr28:9298552-9298928 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 13, 115 |
| Conread position: | 103-325 |
| Cow position: | chr28:34696333-34696555 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-362 |
| Cow position: | chr28:33210397-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 103-431 |
| Cow position: | chr28:11333800-11333472 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 103-445 |
| Cow position: | chr28:11333884-11333542 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 303, 299 |
| Conread position: | 103-445 |
| Cow position: | chr28:34695997-34696339 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 303, 297 |
| Conread position: | 103-460 |
| Cow position: | chr28:9253272-9253630 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 325, 340 |
| Conread position: | 103-466 |
| Cow position: | chr28:7757585-7757948 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 103-466 |
| Cow position: | chr28:7757669-7758032 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 211, 201 |
| Conread position: | 103-466 |
| Cow position: | chr28:9253104-9253467 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 303, 299 |
| Conread position: | 103-466 |
| Cow position: | chr28:34696081-34696444 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 303, 297 |
| Conread position: | 104-431 |
| Cow position: | chr28:7758006-7758333 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 304, 299 |
| Conread position: | 104-466 |
| Cow position: | chr28:7810348-7810703 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 14, 177 |
| Conread position: | 105-466 |
| Cow position: | chr28:33210231-33210593 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 303, 295 |
| Conread position: | 111-455 |
| Cow position: | chr28:7758333-7758677 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 295, 291 |
| Conread position: | 115-466 |
| Cow position: | chr28:9253032-9253383 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 201, 185 |
| Conread position: | 115-466 |
| Cow position: | chr28:9290265-9290614 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 291, 114 |
| Conread position: | 117-467 |
| Cow position: | chr28:7757851-7758201 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 298, 286 |
| Conread position: | 122-377 |
| Cow position: | chr28:7810284-7810539 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 122-452 |
| Cow position: | chr28:9298837-9299163 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 273, 155 |
| Conread position: | 122-466 |
| Cow position: | chr28:7757436-7757780 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 122-466 |
| Cow position: | chr28:7757520-7757864 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 178 |
| Conread position: | 122-466 |
| Cow position: | chr28:7757772-7758116 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 95 |
| Conread position: | 122-467 |
| Cow position: | chr28:7810527-7810872 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 123-439 |
| Cow position: | chr28:34696269-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 84 |
| Conread position: | 123-454 |
| Cow position: | chr28:34696185-34696516 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 125-369 |
| Cow position: | chr28:9290442-9290685 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 126-441 |
| Cow position: | chr28:9299245-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 126-455 |
| Cow position: | chr28:11333945-11333616 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 297, 313 |
| Conread position: | 126-466 |
| Cow position: | chr28:9253211-9253551 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 280, 276 |
| Conread position: | 185-466 |
| Cow position: | chr28:33210227-33210508 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 199, 206 |
Show alignments to all cow chromosomes.