Cow genome map
| Conread name: | Pla1-C0000935_B03 |
| Conread position: | 1-293 |
| Cow position: | chr14:19814245-19814533 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 132, 33 |
| Conread position: | 1-301 |
| Cow position: | chr14:36440216-36439924 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 130, 44 |
| Conread position: | 1-332 |
| Cow position: | chr14:24989410-24989100 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 1-345 |
| Cow position: | chr14:34221368-34221014 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 83 |
| Conread position: | 1-348 |
| Cow position: | chr14:39877298-39877639 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 32 |
| Conread position: | 1-369 |
| Cow position: | chr14:20069208-20069576 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 142, 22 |
| Conread position: | 1-409 |
| Cow position: | chr14:7647724-7648132 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 1-422 |
| Cow position: | chr14:26449060-26448632 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 6 |
| Conread position: | 3-398 |
| Cow position: | chr14:20865019-20865407 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 126, 5 |
| Conread position: | 3-412 |
| Cow position: | chr14:25458630-25458231 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 11 |
| Conread position: | 4-371 |
| Cow position: | chr14:2967344-2967703 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 138, 81 |
| Conread position: | 4-409 |
| Cow position: | chr14:37678685-37679115 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 4-409 |
| Cow position: | chr14:44860930-44861344 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 80 |
| Conread position: | 4-412 |
| Cow position: | chr14:26108951-26108523 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 78 |
| Conread position: | 4-424 |
| Cow position: | chr14:6984657-6985085 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 125, 38 |
| Conread position: | 4-424 |
| Cow position: | chr14:35700743-35700296 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 81 |
| Conread position: | 4-424 |
| Cow position: | chr14:38355494-38355057 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 46, 77 |
| Conread position: | 5-369 |
| Cow position: | chr14:31399886-31399525 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 80 |
| Conread position: | 5-423 |
| Cow position: | chr14:7813265-7813698 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 6-340 |
| Cow position: | chr14:18448698-18449050 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 6-355 |
| Cow position: | chr14:39616600-39616953 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 6-369 |
| Cow position: | chr14:21018420-21018043 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 36 |
| Conread position: | 6-390 |
| Cow position: | chr14:9875700-9875321 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 28, 80 |
| Conread position: | 6-409 |
| Cow position: | chr14:10907026-10906618 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 67 |
| Conread position: | 6-409 |
| Cow position: | chr14:47974288-47973872 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 78 |
| Conread position: | 6-424 |
| Cow position: | chr14:15990503-15990097 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 8-186 |
| Cow position: | chr14:21534737-21534911 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 165, 20 |
| Conread position: | 8-424 |
| Cow position: | chr14:47603996-47604427 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 61 |
| Conread position: | 9-377 |
| Cow position: | chr14:31785279-31784890 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 120, 40 |
| Conread position: | 10-186 |
| Cow position: | chr14:45239673-45239838 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 132, 32 |
| Conread position: | 10-323 |
| Cow position: | chr14:19957606-19957931 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 113, 73 |
| Conread position: | 11-199 |
| Cow position: | chr14:22909463-22909650 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 118, 76 |
| Conread position: | 11-244 |
| Cow position: | chr14:45292617-45292868 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 114, 76 |
| Conread position: | 11-404 |
| Cow position: | chr14:6789673-6789279 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 109, 58 |
| Conread position: | 11-412 |
| Cow position: | chr14:8488488-8488081 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 31 |
| Conread position: | 11-412 |
| Cow position: | chr14:23107630-23107208 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 58 |
| Conread position: | 18-381 |
| Cow position: | chr14:12559188-12559562 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 62 |
| Conread position: | 19-345 |
| Cow position: | chr14:10742794-10742467 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 110, 52 |
| Conread position: | 21-311 |
| Cow position: | chr14:24837669-24837949 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 108, 19 |
| Conread position: | 36-333 |
| Cow position: | chr14:8518312-8518616 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 88, 51 |
| Conread position: | 37-398 |
| Cow position: | chr14:21691002-21691375 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 137, 45 |
| Conread position: | 47-386 |
| Cow position: | chr14:44594877-44595212 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 145, 35 |
| Conread position: | 51-381 |
| Cow position: | chr14:46962804-46962467 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 77, 33 |
| Conread position: | 57-424 |
| Cow position: | chr14:26960181-26960546 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 70-412 |
| Cow position: | chr14:14182587-14182222 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 90-371 |
| Cow position: | chr14:37447249-37447536 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 97-423 |
| Cow position: | chr14:22459652-22459981 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 131-424 |
| Cow position: | chr14:20795956-20795645 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 64, 273 |
| Conread position: | 147-405 |
| Cow position: | chr14:13927975-13928232 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 114, 28 |
| Conread position: | 153-386 |
| Cow position: | chr14:28565616-28565385 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 16, 47 |
| Conread position: | 159-377 |
| Cow position: | chr14:7582316-7582528 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 182-403 |
| Cow position: | chr14:27104195-27103977 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 192, 42 |
| Conread position: | 183-409 |
| Cow position: | chr14:6442024-6441795 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 109, 47 |
| Conread position: | 186-424 |
| Cow position: | chr14:2189745-2189503 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 100, 40 |
| Conread position: | 187-377 |
| Cow position: | chr14:18979091-18979280 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 109, 31 |
| Conread position: | 188-340 |
| Cow position: | chr14:33553294-33553143 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 50 |
| Conread position: | 189-384 |
| Cow position: | chr14:20435502-20435305 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 189-386 |
| Cow position: | chr14:20045659-20045462 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 189-422 |
| Cow position: | chr14:45849113-45849347 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 135, 38 |
| Conread position: | 191-341 |
| Cow position: | chr14:20429687-20429538 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 99, 28 |
| Conread position: | 191-369 |
| Cow position: | chr14:23008282-23008111 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 191-379 |
| Cow position: | chr14:22657348-22657168 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 191-404 |
| Cow position: | chr14:3934056-3934259 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 207, 31 |
| Conread position: | 195-398 |
| Cow position: | chr14:21084444-21084241 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 91, 28 |
| Conread position: | 197-424 |
| Cow position: | chr14:10692167-10692393 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 100, 23 |
| Conread position: | 222-398 |
| Cow position: | chr14:28605312-28605133 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 234-380 |
| Cow position: | chr14:21369432-21369286 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 133, 72 |
| Conread position: | 235-424 |
| Cow position: | chr14:19022831-19023029 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 151 |
| Conread position: | 236-386 |
| Cow position: | chr14:45515512-45515663 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 239-424 |
| Cow position: | chr14:47519689-47519884 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 110 |
| Conread position: | 245-404 |
| Cow position: | chr14:8874996-8875155 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 252-424 |
| Cow position: | chr14:20701769-20701944 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 66, 140 |
| Conread position: | 259-386 |
| Cow position: | chr14:26153226-26153357 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 261-424 |
| Cow position: | chr14:36080877-36081042 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 110, 130 |
Show alignments to all cow chromosomes.