Cow genome map

Conread name: Pla1-C0000935_B03

Conread position: 1-189
Cow position: chr16:26500890-26501078 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 129, 68

Conread position: 1-347
Cow position: chr16:16963539-16963895 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 246
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 128, 42

Conread position: 1-347
Cow position: chr16:20476261-20476622 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 250
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 87

Conread position: 1-371
Cow position: chr16:42242389-42242001 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 268
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 125, 64

Conread position: 1-377
Cow position: chr16:56445673-56445295 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 81

Conread position: 1-386
Cow position: chr16:30639068-30639456 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 88

Conread position: 1-409
Cow position: chr16:23066397-23066810 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 82

Conread position: 1-409
Cow position: chr16:36930590-36930163 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 305
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 122, 19

Conread position: 3-375
Cow position: chr16:34210682-34210285 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 81

Conread position: 3-404
Cow position: chr16:28267279-28266883 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 288
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 126, 43

Conread position: 4-261
Cow position: chr16:7639727-7640000 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 39, 81

Conread position: 4-343
Cow position: chr16:571185-570832 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 238
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 39

Conread position: 4-348
Cow position: chr16:37924431-37924085 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 239
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 129, 27

Conread position: 4-354
Cow position: chr16:11153456-11153093 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 254
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 125, 61

Conread position: 4-386
Cow position: chr16:19976697-19977095 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 83

Conread position: 4-409
Cow position: chr16:8704029-8704411 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 278
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 191, 61

Conread position: 4-422
Cow position: chr16:16545803-16546241 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 81

Conread position: 5-424
Cow position: chr16:3628551-3628959 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 300
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 105, 37

Conread position: 6-369
Cow position: chr16:19670597-19670239 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 253
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 130, 30

Conread position: 6-400
Cow position: chr16:15320735-15320338 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 62

Conread position: 6-424
Cow position: chr16:18557532-18557099 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 311
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 36, 71

Conread position: 7-175
Cow position: chr16:4059094-4059259 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 125, 75

Conread position: 7-370
Cow position: chr16:28112181-28111826 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 247
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 116, 31

Conread position: 7-372
Cow position: chr16:52218824-52219187 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 253
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 157, 75

Conread position: 7-374
Cow position: chr16:53086589-53086222 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 241
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 125, 36

Conread position: 8-317
Cow position: chr16:54564813-54564500 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 223
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 47, 62

Conread position: 8-343
Cow position: chr16:48398509-48398166 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 236
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 165, 34

Conread position: 8-409
Cow position: chr16:27013636-27014056 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 76

Conread position: 10-377
Cow position: chr16:12169953-12169584 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 258
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 22, 37

Conread position: 11-290
Cow position: chr16:29510594-29510323 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 91, 71

Conread position: 11-361
Cow position: chr16:4979555-4979908 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 35

Conread position: 11-372
Cow position: chr16:18205710-18206076 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 256
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 166, 71

Conread position: 11-380
Cow position: chr16:44898992-44898630 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 31

Conread position: 11-386
Cow position: chr16:13181479-13181870 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 276
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 122, 70

Conread position: 11-422
Cow position: chr16:23025085-23025507 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 300
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 120, 18

Conread position: 11-424
Cow position: chr16:18426924-18427355 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 31

Conread position: 13-404
Cow position: chr16:4499182-4499573 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 298
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 114, 33

Conread position: 13-409
Cow position: chr16:31419185-31419602 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 301
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 9, 30

Conread position: 13-409
Cow position: chr16:53267470-53267878 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 29

Conread position: 15-379
Cow position: chr16:42257198-42257570 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 31

Conread position: 15-398
Cow position: chr16:13660480-13660092 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 263
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 89, 133

Conread position: 19-294
Cow position: chr16:46223214-46222932 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 115, 61

Conread position: 21-404
Cow position: chr16:48492935-48493330 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 265
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 108, 25

Conread position: 22-424
Cow position: chr16:26134595-26134198 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 277
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 18, 58

Conread position: 23-369
Cow position: chr16:49579829-49580185 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 260
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 20, 63

Conread position: 24-422
Cow position: chr16:52577211-52577631 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 152

Conread position: 24-424
Cow position: chr16:47368535-47368925 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 256
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 91, 70

Conread position: 26-386
Cow position: chr16:54515481-54515850 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 250
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 13, 57

Conread position: 33-381
Cow position: chr16:16056277-16055933 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 241
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 86, 52

Conread position: 36-356
Cow position: chr16:41608372-41608708 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 249
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 82, 47

Conread position: 36-364
Cow position: chr16:12738095-12738424 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 43

Conread position: 37-386
Cow position: chr16:32837781-32837417 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 252
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 95, 49

Conread position: 38-421
Cow position: chr16:19003305-19002924 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 45

Conread position: 39-342
Cow position: chr16:13601305-13600996 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 219
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 101, 18

Conread position: 40-309
Cow position: chr16:52565222-52565501 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 31, 41

Conread position: 50-423
Cow position: chr16:26156357-26155968 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 276
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 79, 34

Conread position: 65-424
Cow position: chr16:11085586-11085206 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 271
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 68, 22

Conread position: 85-398
Cow position: chr16:44723209-44722893 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 220
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 24, 88

Conread position: 93-322
Cow position: chr16:8236500-8236263 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 36, 88

Conread position: 94-386
Cow position: chr16:20260307-20260605 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 35, 89

Conread position: 103-384
Cow position: chr16:9444792-9445089 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 203
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 211

Conread position: 106-409
Cow position: chr16:22872534-22872228 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 219
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 130

Conread position: 136-424
Cow position: chr16:8674060-8674353 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 44

Conread position: 141-406
Cow position: chr16:689581-689854 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 202
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 19, 96

Conread position: 151-424
Cow position: chr16:44581180-44580901 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 20, 74

Conread position: 159-386
Cow position: chr16:52222421-52222200 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 30, 0

Conread position: 161-424
Cow position: chr16:28454383-28454125 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 183
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 206, 62

Conread position: 162-407
Cow position: chr16:21461940-21462177 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 133, 25

Conread position: 188-404
Cow position: chr16:12072575-12072784 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 179, 34

Conread position: 188-408
Cow position: chr16:42312320-42312538 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 100, 34

Conread position: 188-409
Cow position: chr16:11661969-11662188 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 179, 34

Conread position: 188-424
Cow position: chr16:45693081-45693318 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 108, 34

Conread position: 189-370
Cow position: chr16:1440373-1440542 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 189-405
Cow position: chr16:43082299-43082089 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 24, 36

Conread position: 189-421
Cow position: chr16:41711617-41711840 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 131, 37

Conread position: 190-404
Cow position: chr16:37719093-37719308 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 96, 33

Conread position: 191-424
Cow position: chr16:16946601-16946368 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 94, 37

Conread position: 193-398
Cow position: chr16:28827239-28827035 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 95, 21

Conread position: 196-343
Cow position: chr16:37277867-37278011 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 86, 32

Conread position: 196-416
Cow position: chr16:10303805-10303589 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 174, 34

Conread position: 200-382
Cow position: chr16:56104967-56104786 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 88, 26

Conread position: 216-419
Cow position: chr16:47909389-47909183 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 18, 178

Conread position: 234-404
Cow position: chr16:23163601-23163426 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 235-409
Cow position: chr16:2619004-2618832 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 135, 28

Conread position: 253-409
Cow position: chr16:31490313-31490470 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 122, 90

Conread position: 262-424
Cow position: chr16:3566171-3566337 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 105, 24

Show alignments to all cow chromosomes.