Cow genome map
| Conread name: | Pla1-C0000935_B03 |
| Conread position: | 1-324 |
| Cow position: | chr17:25145540-25145220 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 36, 86 |
| Conread position: | 1-369 |
| Cow position: | chr17:10308241-10307880 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 89, 5 |
| Conread position: | 1-369 |
| Cow position: | chr17:10790082-10790450 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 133, 79 |
| Conread position: | 1-386 |
| Cow position: | chr17:6996049-6996449 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 28, 84 |
| Conread position: | 1-386 |
| Cow position: | chr17:11171566-11171958 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 275 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 1-410 |
| Cow position: | chr17:19891385-19891820 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 81 |
| Conread position: | 1-412 |
| Cow position: | chr17:9748540-9748940 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 81 |
| Conread position: | 1-424 |
| Cow position: | chr17:10271271-10271698 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 315 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 128, 32 |
| Conread position: | 2-386 |
| Cow position: | chr17:14848751-14848371 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 130, 8 |
| Conread position: | 3-290 |
| Cow position: | chr17:23880056-23879751 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 99, 81 |
| Conread position: | 4-288 |
| Cow position: | chr17:3471194-3471487 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 119, 78 |
| Conread position: | 4-289 |
| Cow position: | chr17:2006477-2006763 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 142, 18 |
| Conread position: | 4-343 |
| Cow position: | chr17:11216110-11215766 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 128, 78 |
| Conread position: | 4-424 |
| Cow position: | chr17:8279935-8279500 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 5-175 |
| Cow position: | chr17:30999550-30999718 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 131, 52 |
| Conread position: | 5-367 |
| Cow position: | chr17:23205809-23206170 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 79 |
| Conread position: | 5-376 |
| Cow position: | chr17:25707729-25708115 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 82 |
| Conread position: | 5-409 |
| Cow position: | chr17:144398-143985 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 41 |
| Conread position: | 6-230 |
| Cow position: | chr17:15132941-15133164 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 103, 37 |
| Conread position: | 8-381 |
| Cow position: | chr17:8832330-8831977 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 8-384 |
| Cow position: | chr17:8926443-8926048 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 124, 74 |
| Conread position: | 10-381 |
| Cow position: | chr17:25181370-25180984 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 275 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 119, 74 |
| Conread position: | 11-270 |
| Cow position: | chr17:21313021-21312759 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 162, 21 |
| Conread position: | 11-274 |
| Cow position: | chr17:36533154-36533425 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 118, 73 |
| Conread position: | 11-289 |
| Cow position: | chr17:24761443-24761159 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 118, 35 |
| Conread position: | 11-336 |
| Cow position: | chr17:13989394-13989051 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 91, 76 |
| Conread position: | 11-369 |
| Cow position: | chr17:36221351-36221684 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 11-386 |
| Cow position: | chr17:20215952-20216338 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 11-409 |
| Cow position: | chr17:33386211-33386616 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 43 |
| Conread position: | 11-424 |
| Cow position: | chr17:28359633-28360043 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 302 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 120, 32 |
| Conread position: | 12-398 |
| Cow position: | chr17:27504907-27505278 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 72 |
| Conread position: | 13-275 |
| Cow position: | chr17:18815012-18815274 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 123, 29 |
| Conread position: | 14-258 |
| Cow position: | chr17:4473020-4472777 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 159, 28 |
| Conread position: | 14-424 |
| Cow position: | chr17:18174021-18173616 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 36 |
| Conread position: | 15-305 |
| Cow position: | chr17:18245859-18246166 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 95, 69 |
| Conread position: | 17-179 |
| Cow position: | chr17:35232232-35232064 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 80, 66 |
| Conread position: | 17-191 |
| Cow position: | chr17:1328184-1328006 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 122, 25 |
| Conread position: | 19-424 |
| Cow position: | chr17:30236016-30236405 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 257, 12 |
| Conread position: | 25-294 |
| Cow position: | chr17:42435836-42435568 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 27-369 |
| Cow position: | chr17:34864366-34864721 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 35-423 |
| Cow position: | chr17:23147232-23147632 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 38-424 |
| Cow position: | chr17:37138578-37138968 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 62, 27 |
| Conread position: | 85-326 |
| Cow position: | chr17:41811668-41811919 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 44, 83 |
| Conread position: | 90-409 |
| Cow position: | chr17:40815883-40815568 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 107 |
| Conread position: | 92-396 |
| Cow position: | chr17:7595015-7595330 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 39, 108 |
| Conread position: | 99-386 |
| Cow position: | chr17:4085635-4085926 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 100-381 |
| Cow position: | chr17:24880610-24880906 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 140 |
| Conread position: | 101-348 |
| Cow position: | chr17:21812282-21812019 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 101-398 |
| Cow position: | chr17:35212233-35212538 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 139 |
| Conread position: | 101-424 |
| Cow position: | chr17:7614515-7614162 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 32, 139 |
| Conread position: | 112-381 |
| Cow position: | chr17:18569038-18568771 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 16, 114 |
| Conread position: | 152-386 |
| Cow position: | chr17:5360504-5360282 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 154-360 |
| Cow position: | chr17:8293842-8293636 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 175-389 |
| Cow position: | chr17:4891401-4891188 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 5, 49 |
| Conread position: | 188-369 |
| Cow position: | chr17:5296882-5296704 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 188-369 |
| Cow position: | chr17:5986097-5985919 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 188-405 |
| Cow position: | chr17:5787860-5787648 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 128, 32 |
| Conread position: | 188-405 |
| Cow position: | chr17:33903946-33903732 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 185, 34 |
| Conread position: | 188-412 |
| Cow position: | chr17:1455964-1455746 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 188, 29 |
| Conread position: | 188-424 |
| Cow position: | chr17:2270972-2271211 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 100, 34 |
| Conread position: | 188-424 |
| Cow position: | chr17:26162451-26162211 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 148, 32 |
| Conread position: | 188-424 |
| Cow position: | chr17:36400073-36400312 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 189-370 |
| Cow position: | chr17:13601000-13600825 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 108, 28 |
| Conread position: | 189-398 |
| Cow position: | chr17:21373654-21373856 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 189-424 |
| Cow position: | chr17:6570163-6569933 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 178, 31 |
| Conread position: | 189-424 |
| Cow position: | chr17:7205394-7205634 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 102, 41 |
| Conread position: | 189-424 |
| Cow position: | chr17:32457592-32457356 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 181, 33 |
| Conread position: | 190-409 |
| Cow position: | chr17:27257254-27257023 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 193-424 |
| Cow position: | chr17:21730308-21730083 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 149, 25 |
| Conread position: | 194-408 |
| Cow position: | chr17:26614751-26614540 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 176, 26 |
| Conread position: | 195-381 |
| Cow position: | chr17:13716056-13715868 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 97, 35 |
| Conread position: | 195-386 |
| Cow position: | chr17:38139488-38139680 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 197-424 |
| Cow position: | chr17:31798467-31798245 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 20 |
| Conread position: | 199-412 |
| Cow position: | chr17:1328581-1328795 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 90, 27 |
| Conread position: | 201-412 |
| Cow position: | chr17:36818023-36818234 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 93, 49 |
| Conread position: | 219-412 |
| Cow position: | chr17:10220851-10221042 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 222-409 |
| Cow position: | chr17:13229381-13229572 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 74, 37 |
| Conread position: | 227-424 |
| Cow position: | chr17:14278069-14278267 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 61, 169 |
| Conread position: | 229-354 |
| Cow position: | chr17:33153973-33154098 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 230-424 |
| Cow position: | chr17:10769502-10769295 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 233-386 |
| Cow position: | chr17:23318303-23318150 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-379 |
| Cow position: | chr17:36173958-36173809 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 241-386 |
| Cow position: | chr17:34870101-34870251 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 266-424 |
| Cow position: | chr17:8215238-8215402 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 273-409 |
| Cow position: | chr17:5041353-5041211 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 122 |
Show alignments to all cow chromosomes.