Cow genome map

Conread name: Pla1-C0000935_B03

Conread position: 1-284
Cow position: chr18:51412072-51412359 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 84, 10

Conread position: 1-290
Cow position: chr18:36912003-36911690 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 220
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 36, 284

Conread position: 1-343
Cow position: chr18:34052290-34051937 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 251
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 128, 41

Conread position: 1-343
Cow position: chr18:35012609-35012263 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 255
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 65, 70

Conread position: 1-347
Cow position: chr18:31997178-31997510 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 231
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 275, 81

Conread position: 1-370
Cow position: chr18:4673024-4673385 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 248
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 77, 39

Conread position: 1-374
Cow position: chr18:55697318-55696940 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 30

Conread position: 1-381
Cow position: chr18:45961562-45961178 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 41

Conread position: 1-384
Cow position: chr18:16134611-16134218 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 67

Conread position: 1-386
Cow position: chr18:25003180-25002792 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 84

Conread position: 1-409
Cow position: chr18:16842368-16841930 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 41

Conread position: 3-366
Cow position: chr18:51587840-51587467 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 265
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 126, 37

Conread position: 3-373
Cow position: chr18:21574702-21575071 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 258
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 120, 60

Conread position: 3-386
Cow position: chr18:716092-716467 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 271
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 126, 42

Conread position: 4-397
Cow position: chr18:23424628-23425026 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 79

Conread position: 4-400
Cow position: chr18:10101192-10101599 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 38

Conread position: 4-409
Cow position: chr18:43114220-43113827 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 78

Conread position: 4-424
Cow position: chr18:50700365-50700826 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 81

Conread position: 5-341
Cow position: chr18:50993569-50993226 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 259
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 126, 72

Conread position: 5-381
Cow position: chr18:34325257-34324862 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 282
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 124, 36

Conread position: 6-363
Cow position: chr18:21682268-21681899 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 30

Conread position: 6-371
Cow position: chr18:19273399-19273014 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 270
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 123, 25

Conread position: 6-424
Cow position: chr18:2439019-2438625 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 285
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 282, 36

Conread position: 7-409
Cow position: chr18:26335112-26334684 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 300
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 126, 5

Conread position: 9-398
Cow position: chr18:4578764-4578381 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 276
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 120, 74

Conread position: 9-406
Cow position: chr18:40203094-40202693 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 288
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 180, 75

Conread position: 9-424
Cow position: chr18:20127397-20126966 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 33

Conread position: 11-398
Cow position: chr18:51298188-51298588 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 69

Conread position: 11-423
Cow position: chr18:25970925-25970506 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 76

Conread position: 11-424
Cow position: chr18:51272033-51271608 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 289
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 212, 78

Conread position: 12-358
Cow position: chr18:38794152-38793818 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 246
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 128, 31

Conread position: 13-354
Cow position: chr18:19387289-19387637 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 67

Conread position: 13-424
Cow position: chr18:249094-248678 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 297
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 164, 69

Conread position: 15-291
Cow position: chr18:23652902-23652623 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 114, 28

Conread position: 19-398
Cow position: chr18:42060791-42061184 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 70

Conread position: 19-424
Cow position: chr18:3166773-3166350 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 285
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 25, 66

Conread position: 20-370
Cow position: chr18:35797341-35797700 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 22

Conread position: 21-386
Cow position: chr18:1495022-1495401 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 258
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 108, 63

Conread position: 22-299
Cow position: chr18:21203541-21203264 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 107, 62

Conread position: 26-412
Cow position: chr18:16726368-16726773 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 58

Conread position: 27-381
Cow position: chr18:32773602-32773971 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 97, 43

Conread position: 28-323
Cow position: chr18:329549-329239 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 214
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 95, 55

Conread position: 36-424
Cow position: chr18:6157647-6158050 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 277
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 19, 199

Conread position: 45-409
Cow position: chr18:19363673-19364054 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 274
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 84, 24

Conread position: 47-369
Cow position: chr18:23360372-23360708 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 231
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 62, 40

Conread position: 47-408
Cow position: chr18:22411874-22411491 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 35

Conread position: 84-409
Cow position: chr18:44493694-44493364 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 224
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 53, 31

Conread position: 85-424
Cow position: chr18:15831800-15831461 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 143

Conread position: 106-424
Cow position: chr18:21706364-21706049 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 218
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 58, 120

Conread position: 142-370
Cow position: chr18:24364208-24363979 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 92

Conread position: 142-404
Cow position: chr18:15689142-15689402 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 149, 35

Conread position: 147-377
Cow position: chr18:46321116-46320897 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 174, 11

Conread position: 153-369
Cow position: chr18:32517488-32517273 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 156-381
Cow position: chr18:20423104-20422886 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 206, 25

Conread position: 184-407
Cow position: chr18:38126553-38126331 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 75, 38

Conread position: 188-341
Cow position: chr18:23487928-23488073 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 188-363
Cow position: chr18:213638-213463 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 108, 42

Conread position: 189-381
Cow position: chr18:37331624-37331436 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 130, 30

Conread position: 189-424
Cow position: chr18:16448458-16448680 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 179, 33

Conread position: 189-424
Cow position: chr18:32908951-32909183 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 85, 30

Conread position: 191-400
Cow position: chr18:5755886-5756090 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 110, 14

Conread position: 194-409
Cow position: chr18:1190813-1190600 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 127, 24

Conread position: 222-403
Cow position: chr18:44400379-44400561 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 11

Conread position: 235-398
Cow position: chr18:26372862-26373029 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 57, 160

Conread position: 238-404
Cow position: chr18:30566610-30566444 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 130, 43

Conread position: 242-424
Cow position: chr18:48458623-48458811 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 42, 153

Conread position: 289-424
Cow position: chr18:44408418-44408552 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 78, 102

Show alignments to all cow chromosomes.