Cow genome map
| Conread name: | Pla1-C0000935_B03 |
| Conread position: | 1-307 |
| Cow position: | chr24:42581126-42580813 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 1-369 |
| Cow position: | chr24:31159333-31159704 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 39, 82 |
| Conread position: | 1-412 |
| Cow position: | chr24:28335837-28335430 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 1-424 |
| Cow position: | chr24:40091870-40091436 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 86 |
| Conread position: | 2-157 |
| Cow position: | chr24:5561673-5561827 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 74 |
| Conread position: | 2-298 |
| Cow position: | chr24:19535538-19535244 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 130, 54 |
| Conread position: | 2-400 |
| Cow position: | chr24:24311207-24311621 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 48 |
| Conread position: | 2-409 |
| Cow position: | chr24:17980920-17981315 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 187, 82 |
| Conread position: | 4-289 |
| Cow position: | chr24:23556621-23556334 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 125, 51 |
| Conread position: | 4-424 |
| Cow position: | chr24:34369298-34368857 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 42 |
| Conread position: | 5-409 |
| Cow position: | chr24:36801112-36801506 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 5-414 |
| Cow position: | chr24:25677743-25678159 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 80 |
| Conread position: | 6-421 |
| Cow position: | chr24:14337444-14337870 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 305 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 7-347 |
| Cow position: | chr24:39807869-39808196 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 119, 46 |
| Conread position: | 7-358 |
| Cow position: | chr24:27683731-27683379 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 77 |
| Conread position: | 7-366 |
| Cow position: | chr24:15508823-15508458 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 122, 35 |
| Conread position: | 7-386 |
| Cow position: | chr24:6508052-6507664 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 35 |
| Conread position: | 7-397 |
| Cow position: | chr24:39742536-39742931 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 275 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 119, 36 |
| Conread position: | 7-412 |
| Cow position: | chr24:27633124-27633532 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 77 |
| Conread position: | 8-424 |
| Cow position: | chr24:28279356-28279773 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 295 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 114, 38 |
| Conread position: | 9-306 |
| Cow position: | chr24:39955333-39955025 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 120, 74 |
| Conread position: | 11-324 |
| Cow position: | chr24:23685346-23685023 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 118, 73 |
| Conread position: | 11-404 |
| Cow position: | chr24:42943407-42942995 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 297 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 11-409 |
| Cow position: | chr24:32759055-32758632 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 11-424 |
| Cow position: | chr24:31776470-31776876 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 6, 73 |
| Conread position: | 13-227 |
| Cow position: | chr24:40445849-40446060 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 204, 74 |
| Conread position: | 13-424 |
| Cow position: | chr24:39350491-39350075 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 70 |
| Conread position: | 17-418 |
| Cow position: | chr24:39681576-39681987 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 67 |
| Conread position: | 19-373 |
| Cow position: | chr24:30860360-30860727 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 104, 36 |
| Conread position: | 19-424 |
| Cow position: | chr24:31378477-31378898 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 22-362 |
| Cow position: | chr24:35529649-35529989 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 107, 62 |
| Conread position: | 23-281 |
| Cow position: | chr24:39258891-39259157 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 25-348 |
| Cow position: | chr24:12992784-12993109 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 106, 57 |
| Conread position: | 26-349 |
| Cow position: | chr24:32894143-32894460 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 26-400 |
| Cow position: | chr24:32158540-32158155 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 34-380 |
| Cow position: | chr24:14617394-14617760 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 95, 48 |
| Conread position: | 38-372 |
| Cow position: | chr24:28349327-28349667 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 91, 44 |
| Conread position: | 48-424 |
| Cow position: | chr24:27054152-27054557 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 286 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 75-369 |
| Cow position: | chr24:18787141-18786835 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 84-376 |
| Cow position: | chr24:12263919-12263617 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 151 |
| Conread position: | 85-408 |
| Cow position: | chr24:15617670-15617346 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 92-379 |
| Cow position: | chr24:32086122-32085833 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 130-340 |
| Cow position: | chr24:18393679-18393464 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 134-424 |
| Cow position: | chr24:16055656-16055361 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 61, 6 |
| Conread position: | 141-381 |
| Cow position: | chr24:40809513-40809264 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 147-404 |
| Cow position: | chr24:2143621-2143873 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 145, 70 |
| Conread position: | 148-373 |
| Cow position: | chr24:41963233-41963008 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 8, 88 |
| Conread position: | 154-370 |
| Cow position: | chr24:27900606-27900817 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 134, 23 |
| Conread position: | 159-381 |
| Cow position: | chr24:19611892-19612108 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 208, 24 |
| Conread position: | 175-418 |
| Cow position: | chr24:35827633-35827873 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 110, 8 |
| Conread position: | 182-424 |
| Cow position: | chr24:31258432-31258190 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 185, 47 |
| Conread position: | 189-344 |
| Cow position: | chr24:18567606-18567455 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 189-385 |
| Cow position: | chr24:26455751-26455948 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 103, 31 |
| Conread position: | 189-386 |
| Cow position: | chr24:19754485-19754678 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 179, 31 |
| Conread position: | 189-405 |
| Cow position: | chr24:11201733-11201524 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 182, 37 |
| Conread position: | 189-412 |
| Cow position: | chr24:25164944-25165168 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 27 |
| Conread position: | 193-381 |
| Cow position: | chr24:11456924-11456740 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 130, 37 |
| Conread position: | 196-406 |
| Cow position: | chr24:22888507-22888717 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 95, 22 |
| Conread position: | 234-422 |
| Cow position: | chr24:10546023-10546212 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 133, 157 |
| Conread position: | 234-424 |
| Cow position: | chr24:6427654-6427853 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 52, 162 |
| Conread position: | 253-402 |
| Cow position: | chr24:23176729-23176578 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 260-424 |
| Cow position: | chr24:38291836-38292005 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 20 |
Show alignments to all cow chromosomes.