Cow genome map
| Conread name: | Pla1-C0000935_B03 |
| Conread position: | 1-347 |
| Cow position: | chr25:20496267-20496627 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 132, 83 |
| Conread position: | 1-409 |
| Cow position: | chr25:23410389-23410811 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 84 |
| Conread position: | 3-386 |
| Cow position: | chr25:18000785-18000402 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 31 |
| Conread position: | 3-409 |
| Cow position: | chr25:20625200-20624785 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 28 |
| Conread position: | 4-369 |
| Cow position: | chr25:11585247-11585629 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 79 |
| Conread position: | 4-412 |
| Cow position: | chr25:33691284-33691703 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 298 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 125, 38 |
| Conread position: | 4-424 |
| Cow position: | chr25:17702233-17701820 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 40, 79 |
| Conread position: | 5-220 |
| Cow position: | chr25:37687429-37687213 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 190, 50 |
| Conread position: | 5-424 |
| Cow position: | chr25:14570104-14570538 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 41 |
| Conread position: | 6-255 |
| Cow position: | chr25:36513250-36513481 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 164, 40 |
| Conread position: | 7-373 |
| Cow position: | chr25:18161035-18161397 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 5, 35 |
| Conread position: | 9-339 |
| Cow position: | chr25:18130810-18131149 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 101, 11 |
| Conread position: | 9-369 |
| Cow position: | chr25:34970214-34970573 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 71 |
| Conread position: | 11-224 |
| Cow position: | chr25:24227599-24227371 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 120, 54 |
| Conread position: | 11-381 |
| Cow position: | chr25:22910107-22909737 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 44 |
| Conread position: | 11-398 |
| Cow position: | chr25:10748765-10748361 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 50 |
| Conread position: | 11-424 |
| Cow position: | chr25:24406003-24405561 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 13-384 |
| Cow position: | chr25:20076233-20076624 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 15-424 |
| Cow position: | chr25:24136694-24136273 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 42 |
| Conread position: | 21-329 |
| Cow position: | chr25:22735871-22736185 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 21-363 |
| Cow position: | chr25:14467335-14466989 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 110, 19 |
| Conread position: | 22-290 |
| Cow position: | chr25:33260488-33260759 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 101, 60 |
| Conread position: | 24-398 |
| Cow position: | chr25:22575768-22575390 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 102, 22 |
| Conread position: | 32-424 |
| Cow position: | chr25:8576451-8576865 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 50 |
| Conread position: | 46-398 |
| Cow position: | chr25:29312570-29312198 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 275 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 61-424 |
| Cow position: | chr25:33245720-33246085 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 96-409 |
| Cow position: | chr25:26457865-26457525 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 37, 159 |
| Conread position: | 104-369 |
| Cow position: | chr25:33411081-33411368 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 215 |
| Conread position: | 148-424 |
| Cow position: | chr25:13560325-13560053 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 17, 120 |
| Conread position: | 150-399 |
| Cow position: | chr25:15368591-15368835 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 146, 17 |
| Conread position: | 152-424 |
| Cow position: | chr25:12932513-12932798 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 155-380 |
| Cow position: | chr25:33112067-33111853 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 219, 28 |
| Conread position: | 159-349 |
| Cow position: | chr25:16560271-16560083 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 133, 24 |
| Conread position: | 160-354 |
| Cow position: | chr25:13727483-13727292 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 162-417 |
| Cow position: | chr25:8080631-8080886 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 120, 15 |
| Conread position: | 182-397 |
| Cow position: | chr25:20811445-20811235 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 109, 39 |
| Conread position: | 185-369 |
| Cow position: | chr25:15358432-15358257 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 188-404 |
| Cow position: | chr25:14075235-14075449 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 188-404 |
| Cow position: | chr25:36501304-36501094 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 188-412 |
| Cow position: | chr25:26240470-26240694 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 107, 30 |
| Conread position: | 189-386 |
| Cow position: | chr25:16691597-16691785 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 178, 31 |
| Conread position: | 189-409 |
| Cow position: | chr25:13562369-13562584 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 29 |
| Conread position: | 189-411 |
| Cow position: | chr25:23248804-23248592 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 189-419 |
| Cow position: | chr25:34379175-34378945 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 107, 39 |
| Conread position: | 189-424 |
| Cow position: | chr25:33205147-33204913 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 100, 30 |
| Conread position: | 197-424 |
| Cow position: | chr25:18239448-18239683 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 95, 33 |
| Conread position: | 222-380 |
| Cow position: | chr25:22542847-22542691 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 145, 113 |
| Conread position: | 222-403 |
| Cow position: | chr25:30021034-30021215 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 145, 8 |
| Conread position: | 283-424 |
| Cow position: | chr25:18228202-18228343 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 84, 16 |
Show alignments to all cow chromosomes.