Cow genome map
| Conread name: | Pla1-C0000935_B03 |
| Conread position: | 1-369 |
| Cow position: | chr27:28518512-28518139 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 126, 41 |
| Conread position: | 1-384 |
| Cow position: | chr27:491114-490728 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 128, 41 |
| Conread position: | 1-409 |
| Cow position: | chr27:26440831-26441246 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 24 |
| Conread position: | 1-424 |
| Cow position: | chr27:17645971-17646381 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 290, 83 |
| Conread position: | 1-424 |
| Cow position: | chr27:27049685-27050123 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 303 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 140, 70 |
| Conread position: | 2-424 |
| Cow position: | chr27:6454439-6454001 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 28 |
| Conread position: | 3-372 |
| Cow position: | chr27:22394397-22394019 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 126, 76 |
| Conread position: | 3-381 |
| Cow position: | chr27:29038716-29039111 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 6 |
| Conread position: | 4-386 |
| Cow position: | chr27:21139049-21138656 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 85 |
| Conread position: | 4-424 |
| Cow position: | chr27:13006056-13005631 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 37 |
| Conread position: | 5-359 |
| Cow position: | chr27:4664693-4664332 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 7-381 |
| Cow position: | chr27:8048518-8048901 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 8-409 |
| Cow position: | chr27:26300059-26299648 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 296 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 120, 72 |
| Conread position: | 9-369 |
| Cow position: | chr27:26161715-26161348 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 9-404 |
| Cow position: | chr27:20765744-20766145 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 75 |
| Conread position: | 10-424 |
| Cow position: | chr27:25998923-25998488 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 74 |
| Conread position: | 11-372 |
| Cow position: | chr27:29019529-29019893 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 11-424 |
| Cow position: | chr27:8430222-8430657 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 44 |
| Conread position: | 11-424 |
| Cow position: | chr27:19543692-19544138 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 138, 71 |
| Conread position: | 11-424 |
| Cow position: | chr27:21578385-21578793 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 73 |
| Conread position: | 12-230 |
| Cow position: | chr27:8231010-8230791 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 12-354 |
| Cow position: | chr27:25471360-25471007 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 13-242 |
| Cow position: | chr27:19637849-19637611 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 119, 43 |
| Conread position: | 15-402 |
| Cow position: | chr27:24342117-24341714 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 94, 27 |
| Conread position: | 16-424 |
| Cow position: | chr27:30811644-30811238 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 148, 27 |
| Conread position: | 18-381 |
| Cow position: | chr27:27053507-27053126 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 108, 65 |
| Conread position: | 24-424 |
| Cow position: | chr27:24224702-24225114 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 35-370 |
| Cow position: | chr27:23659147-23659481 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 92, 54 |
| Conread position: | 38-412 |
| Cow position: | chr27:14937238-14937628 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 46 |
| Conread position: | 47-381 |
| Cow position: | chr27:9562184-9562503 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 146, 22 |
| Conread position: | 54-385 |
| Cow position: | chr27:6160156-6159814 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 62-386 |
| Cow position: | chr27:30790613-30790298 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 77-381 |
| Cow position: | chr27:16493725-16493417 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 84-412 |
| Cow position: | chr27:12243988-12244324 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 44, 153 |
| Conread position: | 85-409 |
| Cow position: | chr27:19601523-19601176 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 44, 151 |
| Conread position: | 93-336 |
| Cow position: | chr27:12424788-12425040 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 94-424 |
| Cow position: | chr27:23662467-23662811 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 145 |
| Conread position: | 122-398 |
| Cow position: | chr27:13977465-13977731 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 167, 9 |
| Conread position: | 132-409 |
| Cow position: | chr27:21681241-21681522 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 135-400 |
| Cow position: | chr27:30365404-30365131 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 27, 98 |
| Conread position: | 147-424 |
| Cow position: | chr27:11356478-11356749 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 251, 13 |
| Conread position: | 154-386 |
| Cow position: | chr27:783761-783532 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 161-412 |
| Cow position: | chr27:25982675-25982919 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 182-369 |
| Cow position: | chr27:24509845-24509662 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 109, 36 |
| Conread position: | 188-424 |
| Cow position: | chr27:19083692-19083935 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 108, 30 |
| Conread position: | 190-424 |
| Cow position: | chr27:12247698-12247469 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 177, 28 |
| Conread position: | 197-424 |
| Cow position: | chr27:13970374-13970586 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 174, 25 |
| Conread position: | 234-424 |
| Cow position: | chr27:13958361-13958561 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 58, 161 |
| Conread position: | 251-421 |
| Cow position: | chr27:24333656-24333827 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 251-424 |
| Cow position: | chr27:25880067-25879884 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 143 |
| Conread position: | 252-404 |
| Cow position: | chr27:16525880-16526033 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 122, 139 |
| Conread position: | 258-424 |
| Cow position: | chr27:11746547-11746375 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 39, 137 |
| Conread position: | 268-386 |
| Cow position: | chr27:18219342-18219223 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
Show alignments to all cow chromosomes.